These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1284 fasta sequence [NTNTTTTTGNTTTTTTNNNNTTAACTTTTACTGAATAACCATGAAATAGAAGGTAATTTACAAAGCTATTAGTTGTCATGAACTGGCAATAATTTCACAGATGCACAGCCAAAAGACACTCAAAATGGCATTCACTAAAGATCTTGGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGACAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGCAGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTTCTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTAAATCTGAACTCAGAGGCACTTTGCAATCCAGATATGGGGTGGGATGCGTCGAGCATATTCAGCTGCCAGTAAACATTGTGCTCTCCAAGCAGCTATCAGCTACTGTTAGTACATCAACATGACATCATTGGCAGTGCTTTCCAGGAATGCTGTCTTCGGTGATTCCTTAACCGGACAAGAGTGAAGATATATCGGACAACACATCAATTCTGTTATCTAAGATGGCTTAGTCCTAGACATCTTTCCAACACTCCTCAAACATTGCTGCATTTTACTCAGTTCCTTTCGTGCCATGAAAGCATGAGCACAGGAAACCTGTTGTATCAGAAGGCAGCTAGTATACATTATCCATTTATCCTCCTACCAGTTCCAAACATTTTGGTGAAACGAC-AAGATATCCCTCAAGATTTTTCTTCTTGCCCATGCACAGCTTAAGGAAACTATATCTGGAGCATAATTACATGGTTTCCAGACACTGCACCATTTA-CTCTTCATTGTTGGTGCAAATGAGCATCTTGCATAAACTGAGATCTCTGCCAT--TGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGCATTTTCGCTCACAAGTGGATTCATCAC] [-] EMBL CA758170 [NTNTTTTTGNTTTTTTNNNNTTAACTTTTACTGAATAACCATGAAATAGAAGGTAATTTACAAAGCTATTAGTTGTCATGAACTGGCAATAATTTCACAGATGCACAGCCAAAAGACACTCAAAATGGCATTCACTAAAGATCTTGGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGACAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGCAGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTTCTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTAAATCTGAACTCAGAGGCACTTTGCAATCCAGATATGGGGTGGGATGCGTCGAGCATATTCAGCTGCCAGTAAACATTGTGCTCTCCAAGCAGCTATCAGCTACTGTTAGTACATCAACATGACATCATTGGCAGTGCTTTCCAGGAATGCTGTCTTCGGTGATTCCTTAACCGGACAAGAGTGAAGATATATCGGACAACACATCAATTCTGTTATCTAAGATGGCTTAGTCCTAGACATCTTTCCAACACTCCTCAAACATTGCTGCATTTTACTCAGTTCCTTTCGTGCCATGAAAGCATGAGCACAGGAAACCTGTTGTATC ] [-] EMBL CA764731 [ TCAAAATGGCATTCACTAAAGATCTTGGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGACAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGCAGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTTCTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTAAATCTNAACTCAGAGGCACTTTGCAATCCAGATATGG ] [+] EMBL CB627711 [ GGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGACAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGCAGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTTCTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTAAATCTGAACTCAGAGGCACTTTGCAATCCAGATATGGGGTGGGATGCGTCGAGCATATTCAGCTGCCAGTAAACATTGTGCTCTCCAAGCAGCTATCAGCTACTGTTAGTACATCAACATGACATCATTGGCAGTGCTTTCCAGGAATGCTGTCTTCGGTGATTCCTTAACCGGACAAGAGTGAAGATATATCGGACAACACATCAATTCTGTTATCTAAGATGGCTTAGTCCTAGACATCTTTCCAACACTCCTCAAACATTGCTGCATTTTACTCAGTTCCTTTCGTGCCATGAAAGCATGAGCACAGGAAACCTGTTGTATCAGAAGGCAGCTAGTATACATTATCCATTTATCCTCCTACCAGTTCCAAACATTTTGGTGAAACGAC AAGATATCCCTCAAGATTTTTCTTCTTGCCCATGCACAGCTTAAGGAAACTATATCTGGAGCATAATTACATGGTTTCCAGACACTGCACCATTTA CTCTTCATTGTTGGTGCAAATGAGCATCTTGCATAAACTGAGATCTCTGCCAT TGCGCT ] [-] EMBL CF322917 [ CATTTTGGTGAAACGACAAAGATATCCCTCAAGATTTTTCTTCTTGCCCATGCACAGCTTAAGGAAACTATATCTGGAGCATAATTACATGGTTTCCAGACACTGCACCATTTANCTCTTCATTGTTGGTGCAAATGAGCATCTTGCATAAACTGAGATCTCT CAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGCATTTTCGCTCACAAGTGGATTCATCAC] consensusID : consensus_9129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 741 fasta sequence [GAAGGAAAATTTCTTTGCTACTTCCAGCACTTTAGGTGATGCAAAGCATGATAAGTGGGCTTGCAAACCCTCACAAAGCACAGGTGATCTTACAGTCCTTGACAGCTCAAAACCACCTCGCCAAATATAATTCCAACTCTGGAATAGTTGAAGCTATATGTTTACAGCTAGGTGAAAAGCTTTGACTGGAAAACGTTATTTTTTTTTCCTTCATATCCTTTGACATGGCAGAGATGCTGTCCACAGATCTTCCTCGCATGGAAGGTACAGTCTGGTGATCTCTCAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGCGATTTTCGCTCACAAGTGGATTCATCACCGTGGAAGGCTTTGCCTTATTTACTGGCTCAAAACGTTTAGGTTTTTTAAATGATGCTGACTTAGCA] [-] EMBL CB662387 [GAAGGAAAATTTCTTTGCTACTTCCAGCACTTTAGGTGATGCAAAGCATGATAAGTGGGCTTGCAAACCCTCACAAAGCACAGGTGATCTTACAGTCCTTGACAGCTCAAAACCACCTCGCCAAATATAATTCCAACTCTGGAATAGTTGAAGCTATATGTTTACAGCTAGGTGAAAAGCTTTGACTGGAAAACGTTATTTTTTTTTCCTTCATATCCTTTGACATGGCAGAGATGCTGTCCACAGATCTTCCTCGCATGGAAGGTACAGTCTGGTGATCTCTCAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGCGATTTTCGCTCACAAGTGGATTCATCACCGTGGAAGGCTTTGCCTTATTTACTGGCTCAAAACGTTTAGGTTTTTTAAATGATGCTGACTTAGCA] [-] EMBL CB662388 [ CACTTTAGGTGATGCAAAGCATGATAAGTGGGCTTGCAAACCCTCACAAAGCACAGGTGATCTTACAGTCCTTGACAGCTCAAAACCACCTCGCCAAATATAA TCCAACTCTGGAATAGTTGAAGCTATATGTTTACAGCTAGGTGAAAAGCTTTGACTGGAAAACGTTATTTTTTTTTCCTTCATATCCTTTGACATGGCAGAGATGCTGTCCACAGATCTTCCTCGCATGGAAGGTACAGTCTGGTGATCTCTCAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGC ATTTTCGCTCACAAGTGGATTCATCACCGTGGAAGGCTTTGCCTTATTTACTGGCTCAAAACATTTAGGTTTTTTAAATGATGCTGACTTAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9129#0 NTNTTTTTGNTTTTTTNNNNTTAACTTTTACTGAATAACCATGAAATAGAAGGTAATTTA 60 consensus_9129#1 ------------------------------------------------------------ consensus_9129#0 CAAAGCTATTAGTTGTCATGAACTGGCAATAATTTCACAGATGCACAGCCAAAAGACACT 120 consensus_9129#1 ------------------------------------------------------------ consensus_9129#0 CAAAATGGCATTCACTAAAGATCTTGGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGA 180 consensus_9129#1 ------------------------------------------------------------ consensus_9129#0 CAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGC 240 consensus_9129#1 ------------------------------------------------------------ consensus_9129#0 AGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTT 300 consensus_9129#1 ------------------------------------------------------------ consensus_9129#0 CTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTA 360 consensus_9129#1 ------------------------------------------------------------ consensus_9129#0 AATCTGAACTCAGAGGCACTTTGCAATCCAGATATGGGGTGGGATGCGTCGAGCATATTC 420 consensus_9129#1 ------------------------------------------------------------ consensus_9129#0 AGCTGCCAGTAAACATTGTGCTCTCCAAGCAGCTATCAGCTACTGTTAGTACATCAACAT 480 consensus_9129#1 ------------------------------------------------------------ consensus_9129#0 GACATCATTGGCAGTGCTTTCCAGGAATGCTGTCTTCGGTGATTCCTTAACCGGACAAGA 540 consensus_9129#1 ------------------------------------------------------------ consensus_9129#0 GTGAAGATATATCGGACAACACATCAATTCTGTTATCTAAGATGGCTTAGTCCTAGACAT 600 consensus_9129#1 ------------------------------------------------------------ consensus_9129#0 CTTTCCAACACTCCTCAAACATTGCTGCATTTTACTCAGTTCCTTTCGTGCCATGAAAGC 660 consensus_9129#1 ------------GAAGGAAAATTTCTTTGCTACTTCCAGCACTTTAGGTGATGC-AAAGC 47 ** *** ** * *** * ** *** ***** consensus_9129#0 ATGAGCACAGGAAACCTGTTGTATCAGAAGGCAGCTAGTATACATTATCCATTTATCCTC 720 consensus_9129#1 ATGATAAGTGGGCTTGCAAACCCTCACAAAGCA-------CAGGTGATCTTACAGTCCT- 99 **** * ** *** ** *** * * *** **** consensus_9129#0 CTACCAGTTCCAAACATTTTGGTGAAACGACAAGATATCCCTCAAGATTTTTCTTCTTGC 780 consensus_9129#1 -TGACAGCTCAAAACCACCTCGCCAAATATAATTCCAACTCT-GGAATAGTTGAAGCTAT 157 * *** ** **** * * *** * * * ** ** ** * consensus_9129#0 CCATGCACAGCTTAAGGAAA--CTATATCTGGAGCATAATTACATGGTTTCCAGACACTG 838 consensus_9129#1 ATGTTTACAGCTAGGTGAAAAGCTTTGACTGGAAAACG-TTATTTTTTTTTCCTTCATAT 216 * ****** **** ** * ***** * *** * *** * ** consensus_9129#0 CACCATTTACTCTTCATTGTTGGTGCAAATGAGCAT--CTTGCATAAA---------CTG 887 consensus_9129#1 C--CTTTGACATGGCAGAGATGCTGTCCACAGATCTTCCTCGCATGGAAGGTACAGTCTG 274 * * ** ** ** * ** ** * * ** **** * *** consensus_9129#0 A-GATCTCT-GCCATTGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAA 945 consensus_9129#1 GTGATCTCTCAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAA 334 ******* ********************************************* consensus_9129#0 GCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTT 1005 consensus_9129#1 GCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTT 394 ************************************************************ consensus_9129#0 TTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTT 1065 consensus_9129#1 TTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTT 454 ************************************************************ consensus_9129#0 CTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAAT 1125 consensus_9129#1 CTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAAT 514 ************************************************************ consensus_9129#0 ATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGA 1185 consensus_9129#1 ATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGA 574 ************************************************************ consensus_9129#0 ATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATAT 1245 consensus_9129#1 ATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATAT 634 ************************************************************ consensus_9129#0 ATCGTTTCTTGC-ATTTTCGCTCACAAGTGGATTCATCAC-------------------- 1284 consensus_9129#1 ATCGTTTCTTGCGATTTTCGCTCACAAGTGGATTCATCACCGTGGAAGGCTTTGCCTTAT 694 ************ *************************** consensus_9129#0 ----------------------------------------------- consensus_9129#1 TTACTGGCTCAAAACGTTTAGGTTTTTTAAATGATGCTGACTTAGCA 741 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||