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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1284 fasta sequence
[NTNTTTTTGNTTTTTTNNNNTTAACTTTTACTGAATAACCATGAAATAGAAGGTAATTTACAAAGCTATTAGTTGTCATGAACTGGCAATAATTTCACAGATGCACAGCCAAAAGACACTCAAAATGGCATTCACTAAAGATCTTGGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGACAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGCAGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTTCTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTAAATCTGAACTCAGAGGCACTTTGCAATCCAGATATGGGGTGGGATGCGTCGAGCATATTCAGCTGCCAGTAAACATTGTGCTCTCCAAGCAGCTATCAGCTACTGTTAGTACATCAACATGACATCATTGGCAGTGCTTTCCAGGAATGCTGTCTTCGGTGATTCCTTAACCGGACAAGAGTGAAGATATATCGGACAACACATCAATTCTGTTATCTAAGATGGCTTAGTCCTAGACATCTTTCCAACACTCCTCAAACATTGCTGCATTTTACTCAGTTCCTTTCGTGCCATGAAAGCATGAGCACAGGAAACCTGTTGTATCAGAAGGCAGCTAGTATACATTATCCATTTATCCTCCTACCAGTTCCAAACATTTTGGTGAAACGAC-AAGATATCCCTCAAGATTTTTCTTCTTGCCCATGCACAGCTTAAGGAAACTATATCTGGAGCATAATTACATGGTTTCCAGACACTGCACCATTTA-CTCTTCATTGTTGGTGCAAATGAGCATCTTGCATAAACTGAGATCTCTGCCAT--TGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGCATTTTCGCTCACAAGTGGATTCATCAC]
[-] EMBL CA758170 [NTNTTTTTGNTTTTTTNNNNTTAACTTTTACTGAATAACCATGAAATAGAAGGTAATTTACAAAGCTATTAGTTGTCATGAACTGGCAATAATTTCACAGATGCACAGCCAAAAGACACTCAAAATGGCATTCACTAAAGATCTTGGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGACAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGCAGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTTCTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTAAATCTGAACTCAGAGGCACTTTGCAATCCAGATATGGGGTGGGATGCGTCGAGCATATTCAGCTGCCAGTAAACATTGTGCTCTCCAAGCAGCTATCAGCTACTGTTAGTACATCAACATGACATCATTGGCAGTGCTTTCCAGGAATGCTGTCTTCGGTGATTCCTTAACCGGACAAGAGTGAAGATATATCGGACAACACATCAATTCTGTTATCTAAGATGGCTTAGTCCTAGACATCTTTCCAACACTCCTCAAACATTGCTGCATTTTACTCAGTTCCTTTCGTGCCATGAAAGCATGAGCACAGGAAACCTGTTGTATC ]
[-] EMBL CA764731 [ TCAAAATGGCATTCACTAAAGATCTTGGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGACAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGCAGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTTCTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTAAATCTNAACTCAGAGGCACTTTGCAATCCAGATATGG ]
[+] EMBL CB627711 [ GGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGACAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGCAGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTTCTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTAAATCTGAACTCAGAGGCACTTTGCAATCCAGATATGGGGTGGGATGCGTCGAGCATATTCAGCTGCCAGTAAACATTGTGCTCTCCAAGCAGCTATCAGCTACTGTTAGTACATCAACATGACATCATTGGCAGTGCTTTCCAGGAATGCTGTCTTCGGTGATTCCTTAACCGGACAAGAGTGAAGATATATCGGACAACACATCAATTCTGTTATCTAAGATGGCTTAGTCCTAGACATCTTTCCAACACTCCTCAAACATTGCTGCATTTTACTCAGTTCCTTTCGTGCCATGAAAGCATGAGCACAGGAAACCTGTTGTATCAGAAGGCAGCTAGTATACATTATCCATTTATCCTCCTACCAGTTCCAAACATTTTGGTGAAACGAC AAGATATCCCTCAAGATTTTTCTTCTTGCCCATGCACAGCTTAAGGAAACTATATCTGGAGCATAATTACATGGTTTCCAGACACTGCACCATTTA CTCTTCATTGTTGGTGCAAATGAGCATCTTGCATAAACTGAGATCTCTGCCAT TGCGCT ]
[-] EMBL CF322917 [ CATTTTGGTGAAACGACAAAGATATCCCTCAAGATTTTTCTTCTTGCCCATGCACAGCTTAAGGAAACTATATCTGGAGCATAATTACATGGTTTCCAGACACTGCACCATTTANCTCTTCATTGTTGGTGCAAATGAGCATCTTGCATAAACTGAGATCTCT CAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGCATTTTCGCTCACAAGTGGATTCATCAC]
consensusID : consensus_9129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 741 fasta sequence
[GAAGGAAAATTTCTTTGCTACTTCCAGCACTTTAGGTGATGCAAAGCATGATAAGTGGGCTTGCAAACCCTCACAAAGCACAGGTGATCTTACAGTCCTTGACAGCTCAAAACCACCTCGCCAAATATAATTCCAACTCTGGAATAGTTGAAGCTATATGTTTACAGCTAGGTGAAAAGCTTTGACTGGAAAACGTTATTTTTTTTTCCTTCATATCCTTTGACATGGCAGAGATGCTGTCCACAGATCTTCCTCGCATGGAAGGTACAGTCTGGTGATCTCTCAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGCGATTTTCGCTCACAAGTGGATTCATCACCGTGGAAGGCTTTGCCTTATTTACTGGCTCAAAACGTTTAGGTTTTTTAAATGATGCTGACTTAGCA]
[-] EMBL CB662387 [GAAGGAAAATTTCTTTGCTACTTCCAGCACTTTAGGTGATGCAAAGCATGATAAGTGGGCTTGCAAACCCTCACAAAGCACAGGTGATCTTACAGTCCTTGACAGCTCAAAACCACCTCGCCAAATATAATTCCAACTCTGGAATAGTTGAAGCTATATGTTTACAGCTAGGTGAAAAGCTTTGACTGGAAAACGTTATTTTTTTTTCCTTCATATCCTTTGACATGGCAGAGATGCTGTCCACAGATCTTCCTCGCATGGAAGGTACAGTCTGGTGATCTCTCAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGCGATTTTCGCTCACAAGTGGATTCATCACCGTGGAAGGCTTTGCCTTATTTACTGGCTCAAAACGTTTAGGTTTTTTAAATGATGCTGACTTAGCA]
[-] EMBL CB662388 [ CACTTTAGGTGATGCAAAGCATGATAAGTGGGCTTGCAAACCCTCACAAAGCACAGGTGATCTTACAGTCCTTGACAGCTCAAAACCACCTCGCCAAATATAA TCCAACTCTGGAATAGTTGAAGCTATATGTTTACAGCTAGGTGAAAAGCTTTGACTGGAAAACGTTATTTTTTTTTCCTTCATATCCTTTGACATGGCAGAGATGCTGTCCACAGATCTTCCTCGCATGGAAGGTACAGTCTGGTGATCTCTCAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGC ATTTTCGCTCACAAGTGGATTCATCACCGTGGAAGGCTTTGCCTTATTTACTGGCTCAAAACATTTAGGTTTTTTAAATGATGCTGACTTAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9129#0 NTNTTTTTGNTTTTTTNNNNTTAACTTTTACTGAATAACCATGAAATAGAAGGTAATTTA 60
consensus_9129#1 ------------------------------------------------------------
consensus_9129#0 CAAAGCTATTAGTTGTCATGAACTGGCAATAATTTCACAGATGCACAGCCAAAAGACACT 120
consensus_9129#1 ------------------------------------------------------------
consensus_9129#0 CAAAATGGCATTCACTAAAGATCTTGGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGA 180
consensus_9129#1 ------------------------------------------------------------
consensus_9129#0 CAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGC 240
consensus_9129#1 ------------------------------------------------------------
consensus_9129#0 AGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTT 300
consensus_9129#1 ------------------------------------------------------------
consensus_9129#0 CTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTA 360
consensus_9129#1 ------------------------------------------------------------
consensus_9129#0 AATCTGAACTCAGAGGCACTTTGCAATCCAGATATGGGGTGGGATGCGTCGAGCATATTC 420
consensus_9129#1 ------------------------------------------------------------
consensus_9129#0 AGCTGCCAGTAAACATTGTGCTCTCCAAGCAGCTATCAGCTACTGTTAGTACATCAACAT 480
consensus_9129#1 ------------------------------------------------------------
consensus_9129#0 GACATCATTGGCAGTGCTTTCCAGGAATGCTGTCTTCGGTGATTCCTTAACCGGACAAGA 540
consensus_9129#1 ------------------------------------------------------------
consensus_9129#0 GTGAAGATATATCGGACAACACATCAATTCTGTTATCTAAGATGGCTTAGTCCTAGACAT 600
consensus_9129#1 ------------------------------------------------------------
consensus_9129#0 CTTTCCAACACTCCTCAAACATTGCTGCATTTTACTCAGTTCCTTTCGTGCCATGAAAGC 660
consensus_9129#1 ------------GAAGGAAAATTTCTTTGCTACTTCCAGCACTTTAGGTGATGC-AAAGC 47
** *** ** * *** * ** *** *****
consensus_9129#0 ATGAGCACAGGAAACCTGTTGTATCAGAAGGCAGCTAGTATACATTATCCATTTATCCTC 720
consensus_9129#1 ATGATAAGTGGGCTTGCAAACCCTCACAAAGCA-------CAGGTGATCTTACAGTCCT- 99
**** * ** *** ** *** * * *** ****
consensus_9129#0 CTACCAGTTCCAAACATTTTGGTGAAACGACAAGATATCCCTCAAGATTTTTCTTCTTGC 780
consensus_9129#1 -TGACAGCTCAAAACCACCTCGCCAAATATAATTCCAACTCT-GGAATAGTTGAAGCTAT 157
* *** ** **** * * *** * * * ** ** ** *
consensus_9129#0 CCATGCACAGCTTAAGGAAA--CTATATCTGGAGCATAATTACATGGTTTCCAGACACTG 838
consensus_9129#1 ATGTTTACAGCTAGGTGAAAAGCTTTGACTGGAAAACG-TTATTTTTTTTTCCTTCATAT 216
* ****** **** ** * ***** * *** * *** * **
consensus_9129#0 CACCATTTACTCTTCATTGTTGGTGCAAATGAGCAT--CTTGCATAAA---------CTG 887
consensus_9129#1 C--CTTTGACATGGCAGAGATGCTGTCCACAGATCTTCCTCGCATGGAAGGTACAGTCTG 274
* * ** ** ** * ** ** * * ** **** * ***
consensus_9129#0 A-GATCTCT-GCCATTGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAA 945
consensus_9129#1 GTGATCTCTCAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAA 334
******* *********************************************
consensus_9129#0 GCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTT 1005
consensus_9129#1 GCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTT 394
************************************************************
consensus_9129#0 TTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTT 1065
consensus_9129#1 TTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTT 454
************************************************************
consensus_9129#0 CTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAAT 1125
consensus_9129#1 CTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAAT 514
************************************************************
consensus_9129#0 ATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGA 1185
consensus_9129#1 ATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGA 574
************************************************************
consensus_9129#0 ATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATAT 1245
consensus_9129#1 ATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATAT 634
************************************************************
consensus_9129#0 ATCGTTTCTTGC-ATTTTCGCTCACAAGTGGATTCATCAC-------------------- 1284
consensus_9129#1 ATCGTTTCTTGCGATTTTCGCTCACAAGTGGATTCATCACCGTGGAAGGCTTTGCCTTAT 694
************ ***************************
consensus_9129#0 -----------------------------------------------
consensus_9129#1 TTACTGGCTCAAAACGTTTAGGTTTTTTAAATGATGCTGACTTAGCA 741
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||