cluster # 913

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Oryza sativa
cluster # 913 cluster # 913 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_913#0 length = 301 sequences # 1

consensus_913#1 length = 287 sequences # 1

consensusID : consensus_913#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTAAATAACCTGGGGGGAAAATTTTTTCCCCCTTCACCCCTTGTAAGGGCCCAAGGGCAAATTTTTTAAACCCTGCAGAACTTCCCCCTTTAGGGGGGGTTAATTTTAACCTGGGCGAAACCAGGGCCAAAACTGTTCCCTGGGGAAAATTGTTATCCCCTCAAAATTCCCCCCAAAATACAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGAGGGACCCACC]

[+] EMBL CF298799             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTAAATAACCTGGGGGGAAAATTTTTTCCCCCTTCACCCCTTGTAAGGGCCCAAGGGCAAATTTTTTAAACCCTGCAGAACTTCCCCCTTTAGGGGGGGTTAATTTTAACCTGGGCGAAACCAGGGCCAAAACTGTTCCCTGGGGAAAATTGTTATCCCCTCAAAATTCCCCCCAAAATACAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGAGGGACCCACC]




>consensus_913#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTGGCTAAATAACCTGGGGGGAAAATTTTTTCCCCCTTCACCCCTTGTAAGGGCC
CAAGGGCAAATTTTTTAAACCCTGCAGAACTTCCCCCTTTAGGGGGGGTTAATTTTAACC
TGGGCGAAACCAGGGCCAAAACTGTTCCCTGGGGAAAATTGTTATCCCCTCAAAATTCCC
CCCAAAATACAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGAGGGACCCAC
C

consensusID : consensus_913#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCCTTCACCCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCTGCAGAACTTCCCCTTTTAGGGGGGGTTAATTTTAACCTGGGCGAAATCAGGGCAAAAACTGTTCCCTGGGAAAAATTGTTTTCCCCTCAAAATTCCCCACAAAATACAACCCGGAACCATAAAGGGAAAACCCGGGGGGCCCTAAAGAGGGACCTAACCCACATTATTTGGGTGGCCCCCAC]

[+] EMBL CF335126             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCCTTCACCCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCTGCAGAACTTCCCCTTTTAGGGGGGGTTAATTTTAACCTGGGCGAAATCAGGGCAAAAACTGTTCCCTGGGAAAAATTGTTTTCCCCTCAAAATTCCCCACAAAATACAACCCGGAACCATAAAGGGAAAACCCGGGGGGCCCTAAAGAGGGACCTAACCCACATTATTTGGGTGGCCCCCAC]




>consensus_913#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC
CCCTTCACCCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCTGCAGAACTTCCCCTT
TTAGGGGGGGTTAATTTTAACCTGGGCGAAATCAGGGCAAAAACTGTTCCCTGGGAAAAA
TTGTTTTCCCCTCAAAATTCCCCACAAAATACAACCCGGAACCATAAAGGGAAAACCCGG
GGGGCCCTAAAGAGGGACCTAACCCACATTATTTGGGTGGCCCCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_913#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_913#1      ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45
                                    *********************************************

consensus_913#0      TTTTTTTGGCTAAATAACCTGGGGGGAAAATTTTTTCCCCCTTCACCCCTTGTAAGGGCC 120
consensus_913#1      TTTTTTT-----------------------TTTTTTACCCCTTCACCCCATGTAAGGGCC 82
                     *******                       ****** ************ **********

consensus_913#0      CAAGGGCAAATTTTTTAAACCCTGCAGAACTTCCCCCTTTAGGGGGGGTTAATTTTAACC 180
consensus_913#1      CAAGGGCAAATTTTTTAAAACCTGCAGAACTTCCCCTTTTAGGGGGGGTTAATTTTAACC 142
                     ******************* **************** ***********************

consensus_913#0      TGGGCGAAACCAGGGCCAAAACTGTTCCCTGGGGAAAATTGTTATCCCCTCAAAATTCCC 240
consensus_913#1      TGGGCGAAATCAGGGCAAAAACTGTTCCCTGGGAAAAATTGTTTTCCCCTCAAAATTCCC 202
                     ********* ****** **************** ********* ****************

consensus_913#0      CCCAAAATACAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGAGGGACCCAC 300
consensus_913#1      CACAAAATACAACCCGGAACCATAAAGGGAAAACCCGGGGGGCCCTAAAGAGGGACCTAA 262
                     * ************** ***** ************************* ******** * 

consensus_913#0      C------------------------ 301
consensus_913#1      CCCACATTATTTGGGTGGCCCCCAC 287
                     *