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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 832 fasta sequence
[CTCTCCTCCGCCTCACGCGCACTCGCCGCCGCAAAACCCCGCTCGCCTGAACCCTTCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTTGTATTACTACAACGGCAACAAGCTACCCTTTGCTGCAGCACAGATTGGTCAGGCCTTCAGAAATGAGATATCTCCTCGCCAAGGACTTCTGAGAGTCCGAG]
[+] EMBL CB644404 [CTCTCCTCCGCCTCACGCGCACTCGCCGCCGCAAAACCCCGCTCGCCTGAACCCTTCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTTGTATTACTACAACGGCAACAAGCT ]
[+] EMBL CB638227 [ GCACTCGCCGCCGCAAAACCCCGCTCGCCTGAACCCTTCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATG ]
[+] EMBL CB654280 [ AACCCTCCTCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCCTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTTGTATTACTACAACGGCAACAAGCTACCCTTTGCTGCAGCACAGATTGGTCAGGCCTTCAGAAATGAGATATCTCCTCGCCAAGGACTTCTGAGAGTCCGAG]
[+] EMBL CB676656 [ CTTCGCCCCTTCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTTGTATTACTACAACGGCAACAAGCTACCCTTTGCTGCAGCACAGATTGGTCAGGCCTTCAGAAATGA ]
consensusID : consensus_9130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 723 fasta sequence
[GCCGCCACAATCCCGCTCGCCTGAACCCTTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTTGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACACTGCCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTT]
[+] EMBL CB627046 [GCCGCCACAATCCCGCTCGCCTGAACCCTTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTTGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACACTGCCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTT]
[+] EMBL CB626833 [ CCCTTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCACCTTGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACACTGCCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9130#0 CTCTCCTCCGCCTCACGCGCACTCGCCGCCGCAAAACCCCGCTCGCCTGAACCCTTCGCC 60
consensus_9130#1 ------GCCGCCACAATCCCGCTCGCCTGAACCCTTCGCCGC-CGCC-GCCGCCGCCGCC 52
***** ** * * ****** * * **** **** * ** ****
consensus_9130#0 GCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCG 120
consensus_9130#1 GCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTTGCCGCAGGCATGGCGGCCGCGCCGGCG 112
******************************** ***************************
consensus_9130#0 TCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTG 180
consensus_9130#1 TCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTG 172
************************************************************
consensus_9130#0 GAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTAC 240
consensus_9130#1 GAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTAC 232
************************************************************
consensus_9130#0 GACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCAT 300
consensus_9130#1 GACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCAT 292
************************************************************
consensus_9130#0 TTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTC 360
consensus_9130#1 TTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTC 352
************************************************************
consensus_9130#0 TTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACT 420
consensus_9130#1 TTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACT 412
************************************************************
consensus_9130#0 GGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAG 480
consensus_9130#1 GGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAG 472
************************************************************
consensus_9130#0 GACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGAT 540
consensus_9130#1 GACAATACACTGCCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGAT 532
********* ** ***********************************************
consensus_9130#0 GATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGAC 600
consensus_9130#1 GATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGAC 592
************************************************************
consensus_9130#0 ACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGA 660
consensus_9130#1 ACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGA 652
************************************************************
consensus_9130#0 CCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAAC 720
consensus_9130#1 CCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAAC 712
************************************************************
consensus_9130#0 TTCAAAGACTTGTATTACTACAACGGCAACAAGCTACCCTTTGCTGCAGCACAGATTGGT 780
consensus_9130#1 TTCAAAGACTT------------------------------------------------- 723
***********
consensus_9130#0 CAGGCCTTCAGAAATGAGATATCTCCTCGCCAAGGACTTCTGAGAGTCCGAG 832
consensus_9130#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||