These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1633 fasta sequence [GTTTGAGCAAGAGAAGAACATAGAGGCAGCAATGACAAATTTCAAGAACACCAGGGCTGTATATGAGGAGCTTGGGAAATATGGGAGTATAGAAAATCAACTTTTATGCCGTCAGCGCATTGAGGAAGTGGAACCTATGATTGGATTTTGCTCTCGCAAACTAGGCGGATCAGCTTTGCAAGCACATGAACTACTAGATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAGGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCTCCATTTTGAAAGCTCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAAACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGACGCTCGGAGCTGCATCCGCAATGACTTGGCTTCTGCTGGCAATGCTGAGAATATAAGAGATGAATTGAATGGTCTTGACAAGGCTGTTAGTGCTGTCTTGGGATTCAGAACCATTGAGCGAAACCAATTACTCGTTAGTATTGCTAAAAGCAAGTTTACCAAGCACCGGGATGAGAAGAATGAGAAAATCACAAAACCAGAAGAACTTGTTCGGTTGTATGATCTGCTTATTCAAAATACAACAGATCTGACTGATTTAATTAGCTCAGGAAGGGATAAAAACAAGGAAGAGAACACTTTTATTCAGGAGTATGAGCTGAAAAGTTTGGCTTTCCGAGCTGAGAGATGTTTCTATTTGGCAAAGTCATACAGTTCAGCCGGTAAAAGGGCTGAAGCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTCTGCACTGCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCCAAGATCTTAAGGCTCTTTCTGACAGCTGTAGATCCAATAGCTTCATAGAACATGCGACAGGTATTATGGAGGAAGAGAATGTTCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAAAGGAGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCAAATACCAAAACACCATGTCGCATTGCACGATTCCCACCTCCATTCCAATCAGTTCCGTGTAATCCTATTGTTCTTGATATGGCCTACAATGCGATCGAGTTCCCAAACATTGAGAACAGAATGAAGAAGGAGAAGAAGGGTCTTCTCAGCAGATTCTGGGGCTGAAAAGAAGGGAGGGCGTAGTTCGACAGGATTATCTTCCTCTTGGATTTTGATACATTAGTTTGGTGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTGTTGGGCATCCCTTTCCCCTTAAGAATGTCATACTTTTTTTTTGTTAGGCAAAAAAATTTGCGTTTTCAAAGTACATCAGTTTTGAATGTCACACTAACTCGGTTACATACTGTATGAAGAGATGATTAGATCGCAGTTCAGTATTTAAATTGTCAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA] [+] EMBL AK064573 [GTTTGAGCAAGAGAAGAACATAGAGGCAGCAATGACAAATTTCAAGAACACCAGGGCTGTATATGAGGAGCTTGGGAAATATGGGAGTATAGAAAATCAACTTTTATGCCGTCAGCGCATTGAGGAAGTGGAACCTATGATTGGATTTTGCTCTCGCAAACTAGGCGGATCAGCTTTGCAAGCACATGAACTACTAGATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAGGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCTCCATTTTGAAAGCTCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAAACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGACGCTCGGAGCTGCATCCGCAATGACTTGGCTTCTGCTGGCAATGCTGAGAATATAAGAGATGAATTGAATGGTCTTGACAAGGCTGTTAGTGCTGTCTTGGGATTCAGAACCATTGAGCGAAACCAATTACTCGTTAGTATTGCTAAAAGCAAGTTTACCAAGCACCGGGATGAGAAGAATGAGAAAATCACAAAACCAGAAGAACTTGTTCGGTTGTATGATCTGCTTATTCAAAATACAACAGATCTGACTGATTTAATTAGCTCAGGAAGGGATAAAAACAAGGAAGAGAACACTTTTATTCAGGAGTATGAGCTGAAAAGTTTGGCTTTCCGAGCTGAGAGATGTTTCTATTTGGCAAAGTCATACAGTTCAGCCGGTAAAAGGGCTGAATCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTCTGCACTGCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCCAAGATCTTAAGGCTCTTTCTGACAGCTGTAGATCCAATAGCTTCATAGAACATGCGACAGGTATTATGGAGGAAGAGAATGTTCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAA AGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCAAATACCAAAACACCATGTCGCATTGCGCGATTCCCACCTCCATTCCAATCAGTTCCGTGTAATCCTATTGTTCTTGATATGGCCTACAATGCGATCGAGTTCCCAAACATTGAGAACAGAATGAAGAAGGAGAAGAAGGGTCTTCTCAGCAGATTCTGGGGCTGAAAAGAAGGGAGGGCGTAGTTCGACAGGATTATCTTCCTCTTGGATTTTGATACATTAGTTTGGTGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTGTTGGGCATCCCTTTCCCCTTAAGAATGTCATACTTTTTTTTTGTTAGGCAAAAAAATTTGCGTTTTCAAAATACATCAGTTTTGAATGTCACACTAACTCGGTTACATACTGTATGAAGAGATGATTAGATCGCAGTTCAGTAT ] [+] EMBL CF322959 [ TTTTATGCCGTCAGCGCATTGAGGAAGTGGAACCTATGATTGGATTTTGCTCTCGCAAACTAGGCGGATCAGCTTTGCAAGCACATGAACTACTAGATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAGGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCTCCATTTTGAAAGCTCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAAACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGACGCTCGGAGCTGCATCCGCAATGACTTGGCTTCTGCTGGCAATGCTGAGAATATAAGAGATGAATTGAATGGTCTTGACAAGGCTGTTAGTGCTGTCTTGGGATTCAGAACCATTGAGCGAAACCAATTACTCGTTAGTATTGCTAAAAGCAAGTTTACCAAGCACCGGGATGAGAAGAATGAGA ] [+] EMBL CB621188 [ GCGCTTCAGATTTGCAAGCACATGAACTACTAGATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTACCATTGAGGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCTCCATTTTGAAAGCTCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAAACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGATGCTCGGAGCTGCATCCGCAATGACTTGGCTTCTGCTGGCAATGCTGAGAATATAAGAGATGAATTGAATGGTCTTGACAAGGCTGTTAGTGCTGTCTTGGGATTCAGAACCATTGAGCGAAACCAATTACTCGTTAGTATTGCTAAAAGCAAGTTTACCAAGCACCGGGATGAGAAGAATGAGAAAATCACAAAACCAGAAGAACTTGTTCGGTTGTATGATCTGCTTATTCAAAATACAACAGATCTGACTGATTTAATTAGCTCAGGAAGGGATAAAAACAAGGAAGAGAACACTTTTATTCAGGAGTATGAGCTGAAAAGTTTGGCTTTCCGAGCTGAGAGATGTTTCTATTTGGCAAAGTCATACAGTTCAGCCGGTAAAAGGGCTGAAGCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTCTGCACTGCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCAAAGATCTTAAGGCTCTTT ] [-] EMBL CA758918 [ CACTTTTNATCA GAGTATGAGCTG AAAGTTTGGCTTTCCGAGCTGAGAGATG TTCTATTTGGCAAAGTCATNCAG TCAGCCCGTAAAAGGGCTGAAGCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTNTGCACTGCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCCAAGATCTTAAGGCTCTTTCTGACAGCTGTAGATCCAATAGCTTCATAGAACATGCGACAGGTATTATGGAGGAAGAGAATGTTCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAAAGGAGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCAAATACCAAAACCCCATGTCGCATTGCACGATTCCCACCTCCATTCCAATCAGTTCCGTGTAATCCTATTGTTCTTGATATGGCCTACAATGCGATCGAGTTCCCAACCATTGAGACCAGAATGAAGAAGGAGAAGAAGGGTCTTCTCAGCAGATTTTGGGGCTGAAAAAAAGGGAGGGCGTAGTTCGACAGGATTATCTTCCTCTTGGATTTTGATACATTAGTTTGGTGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTGTTGGGCATCCCTTTCCCCTTAAGAATGTCATACTTTTTTTTTGTTAGGCAAAAAAATTTGGGTTTTCAAAGTACATCAGTTTTGAATGTCACACTAACTCGGTTACATACTGTATGAAAAGATGATTAGATCGCAGTTCAGTATTTAAATTGTCAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA] [-] EMBL CB621189 [ CAGTTCAGCCGGTAAAAGGGCTGAAGCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTCTGCACTGCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCCAAGATCTTAAGGCTCTTTCTGACAGCTGTAGATCCAATAGCTTCATAGAACATGCGACAGGTATTATGGAGGAAGAGAATGTTCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAAAGGAGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCAAATACCAAAACACCATGTCGCATTGCACGATTCCCACCTCCATTCCAATCAGTTCCGTGTAATCCTATTGTTCTTGATATGGCCTACAATGCGATCGAGTTCCCAAACATTGAGAACAGAATGAAGAAGGAGAAGAAGGGTCTTCTCAGCAGATTCTGGGGCTGAAAAGAAGGGAGGGCGTAGTTCGACAGGATTATCTTCCTCTTGGATTTTGATACATTAGTTTGGTGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTGTTGGGCATCCCTTTCCCCTTAAGAATGTCATACTTTTTTTTTGTTAGGCAAAAAAATTTGCGTTTTCAAAGTACATCAGTTTTGAATGTCACACTAACTGGGTTTCTTA TAGGTGAAGAGA ] consensusID : consensus_9132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [GGAGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCTAAATACCATAACACCACTGTCGCATTGCACAGATTCCCACCTCCATTCCTATCTAGTTCCGGGTAATCCTCATTGTTCTTGATACTGGCCTACAATCGCGATCGAGTTCCCCAACATTTGACGAATCAGACATGCAAGCAATGGATGCAACGAATGGGTCTTCTCACCAGATTCGTGGGGCTNGANAAGAAGGGAGCGGTCGTAGTTCGACCAGGAGTTATCTTCCTCTTGGATTTTGATACANTACGTTTGCGCTGGTTTGAATTGGTCTNNTCTTTTGCCANGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTTGTTGGGCATCCCTTTCCCCTTAACAAGGTCATACTGATTTTTTGTTAGGCAAAAAAATTTGCGTTTTCATAAAAAAAAAA] [+] EMBL BQ907839 [GGAGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCTAAATACCATAACACCACTGTCGCATTGCACAGATTCCCACCTCCATTCCTATCTAGTTCCGGGTAATCCTCATTGTTCTTGATACTGGCCTACAATCGCGATCGAGTTCCCCAACATTTGACGAATCAGACATGCAAGCAATGGATGCAACGAATGGGTCTTCTCACCAGATTCGTGGGGCTNGANAAGAAGGGAGCGGTCGTAGTTCGACCAGGAGTTATCTTCCTCTTGGATTTTGATACANTACGTTTGCGCTGGTTTGAATTGGTCTNNTCTTTTGCCANGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTTGTTGGGCATCCCTTTCCCCTTAACAAGGTCATACTGATTTTTTGTTAGGCAAAAAAATTTGCGTTTTCATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9132#0 GTTTGAGCAAGAGAAGAACATAGAGGCAGCAATGACAAATTTCAAGAACACCAGGGCTGT 60 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 ATATGAGGAGCTTGGGAAATATGGGAGTATAGAAAATCAACTTTTATGCCGTCAGCGCAT 120 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 TGAGGAAGTGGAACCTATGATTGGATTTTGCTCTCGCAAACTAGGCGGATCAGCTTTGCA 180 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 AGCACATGAACTACTAGATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAA 240 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 GATTGAGGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAG 300 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 CTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCTCCATTTTGAAAGC 360 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 TCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAA 420 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 ACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGACGCTCGGAGCTGCATCCGCAA 480 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 TGACTTGGCTTCTGCTGGCAATGCTGAGAATATAAGAGATGAATTGAATGGTCTTGACAA 540 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 GGCTGTTAGTGCTGTCTTGGGATTCAGAACCATTGAGCGAAACCAATTACTCGTTAGTAT 600 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 TGCTAAAAGCAAGTTTACCAAGCACCGGGATGAGAAGAATGAGAAAATCACAAAACCAGA 660 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 AGAACTTGTTCGGTTGTATGATCTGCTTATTCAAAATACAACAGATCTGACTGATTTAAT 720 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 TAGCTCAGGAAGGGATAAAAACAAGGAAGAGAACACTTTTATTCAGGAGTATGAGCTGAA 780 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 AAGTTTGGCTTTCCGAGCTGAGAGATGTTTCTATTTGGCAAAGTCATACAGTTCAGCCGG 840 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 TAAAAGGGCTGAAGCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTCTGCACT 900 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 GCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCCAAGATCTTAAGGCTCTTTCTGA 960 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 CAGCTGTAGATCCAATAGCTTCATAGAACATGCGACAGGTATTATGGAGGAAGAGAATGT 1020 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 TCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAAAGGAGGCTTT 1080 consensus_9132#1 ---------------------------------------------------GGAGGCTTT 9 ********* consensus_9132#0 CCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATC-AAATACCAAAACAC 1139 consensus_9132#1 CCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCTAAATACCATAACAC 69 ********************************************* ******** ***** consensus_9132#0 CA-TGTCGCATTGCAC-GATTCCCACCTCCATTCCAATC-AGTTCCGTGTAATCCT-ATT 1195 consensus_9132#1 CACTGTCGCATTGCACAGATTCCCACCTCCATTCCTATCTAGTTCCGGGTAATCCTCATT 129 ** ************* ****************** *** ******* ******** *** consensus_9132#0 GTTCTTGATA-TGGCCTACAAT-GCGATCGAGTTCCCAAACATT----------GAGAAC 1243 consensus_9132#1 GTTCTTGATACTGGCCTACAATCGCGATCGAGTTCCCCAACATTTGACGAATCAGACATG 189 ********** *********** ************** ****** ** * consensus_9132#0 AGAATGAAGAAGGAGAAGAA-GGGTCTTCTCAGCAGATTC-TGGGGCTG-AAAAGAAGGG 1300 consensus_9132#1 CAAGCAATGGATGCAACGAATGGGTCTTCTCACCAGATTCGTGGGGCTNGANAAGAAGGG 249 * * * * * * *** *********** ******* ******* * ******** consensus_9132#0 AGGG--CGTAGTTCGAC--AGGATTATCTTCCTCTTGGATTTTGATACATTA-GTTTGG- 1354 consensus_9132#1 AGCGGTCGTAGTTCGACCAGGAGTTATCTTCCTCTTGGATTTTGATACANTACGTTTGCG 309 ** * *********** * ************************** ** ***** consensus_9132#0 -TGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTGG 1413 consensus_9132#1 CTGGTTTGAATTGGTCTNNTCTTTTGCCANGAACTGGAACATGGCACTCTCGATTGGTGG 369 **************** ********** ****************************** consensus_9132#0 AATGGTTTT-GTTGGGCATCCCTTTCCCCTTAAGAATGTCATACTTTTTTTTTGTTAGGC 1472 consensus_9132#1 AATGGTTTTTGTTGGGCATCCCTTTCCCCTTAACAAGGTCATACTGATTTTTTGTTAGGC 429 ********* *********************** ** ******** ************* consensus_9132#0 AAAAAAATTTGCGTTTTCAAAGTACATCAGTTTTGAATGTCACACTAACTCGGTTACATA 1532 consensus_9132#1 AAAAAAATTTGCGTTTTCATAAAAAAAAAA------------------------------ 459 ******************* * * * * consensus_9132#0 CTGTATGAAGAGATGATTAGATCGCAGTTCAGTATTTAAATTGTCAAGCCTAAAAAAAAA 1592 consensus_9132#1 ------------------------------------------------------------ consensus_9132#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA 1633 consensus_9132#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||