These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1672 fasta sequence [CTTTGTAAAAAAAAAAAAACAACTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAGCGTCAACCTCCCGAATCCATCGCCGCCGCCGCCGCCGCCGGCGATGTCTCCGCCGGCCGACACCGCCGCGCTCGCCTCCACGTCCGGCGCCCCGCTCGCGCCCCTCGTCGCCGCCCAGCTCAACTTCGTCCTCTCCCAAGCCAACCTCCCCATCAGGGTGGGGCAGATCTGGTCCGGATGCCGCGACGGCCGCTACGCCGATCGCTTCACGCTCGCCATCCCCTTCTGCCTCGACTACGTCTACTGGGACTTCCTGTACAATGCGCTGTCGCCGAAGGTGGCGCCGGATGTGGTGTTCGGCCCGGACGACGAGGGGTTTCAGCCGCTAGTCGATTTCGATGAGACCGGGAGTGGGGAGAAGAGCTGCTTGGCAAATTGGGATTGCCGGGACACCTCGGCCCTCCTCTCTCTCATCAAAGAGCTCCGTGAATTTTATATTGAATACCAAAAGAAGCGGGCAGCCGAGGTTGATGACGCAAGACTGAAATTTGAAATAAGCACAGTTCTGTCTAAGGAGGGGATTGAAGTCTGCACGGTATCGTCCAATGGTAGACCAGATGAGGTGAAATTTGCTGTCCCACTTCTGGATCTGGACCTTGCCAAACTGGTTCCTGGATGTCCTTGGAAACTTCCTCAAAAGATCCATTTGCAGGCTGTTTTTCCAATTAGCAGAAGTTACTCCTCTGTTCCTTCTGCACCACGACTCAAATTAGTCTCAACCCCAGATTTGAAGTCATTTTTCTCAGTTGATGATGTTAAACTCCCTCCATGGTTAGATGGAATGTGCATGGCTGAGTATCTTCCTAACTTGGAAGAAAATCTTAAAATCCAGGTTGTGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTTTTGGAAGGCCATTAGAGGCTGATCCGATTTTTTGCAGAAAAGCTACGATTCTTTCCATCTCAGGGATTTTCACTTTTCTGGTCCACTTTGTCATTCCCCTCCAATTCCCTAAGCATCAACCTGTGCTGACATTAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAGCTCCAGTAAATGACTATCCCTGGAGCCCTAGATGGGATCCAACAGAAATGGTTGAACGCATCTATGACTTTTTGGTTGACGAGTGCCAAAC-TTTCAAGAAGTTTTGCAGCGATTCTATCCCTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAAGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACA-CTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGTTCCTGCCATGTACATACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAGTACTACAAAAAAAA] [+] EMBL AK102724 [CTTTGTAAAAAAAAAAAAACAACTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAGCGTCAACCTCCCGAATCCATCGCCGCCGCCGCCGCCGCCGGCGATGTCTCCGCCGGCCGACACCGCCGCGCTCGCCTCCACGTCCGGCGCCCCGCTCGCGCCCCTCGTCGCCGCCCAGCTCAACTTCGTCCTCTCCCAAGCCAACCTCCCCATCAGGGTGGGGCAGATCTGGTCCGGATGCCGCGACGGCCGCTACGCCGATCGCTTCACGCTCGCCATCCCCTTCTGCCTCGACTACGTCTACTGGGACTTCCTGTACAATGCGCTGTCGCCGAAGGTGGCGCCGGATGTGGTGTTCGGCCCGGACGACGAGGGGTTTCAGCCGCTAGTCGATTTCGATGAGACCGGGAGTGGGGAGAAGAGCTGCTTGGCAAATTGGGATTGCCGGGACACCTCGGCCCTCCTCTCTCTCATCAAAGAGCTCCGTGAATTTTATATTGAATACCAAAAGAAGCGGGCAGCCGAGGTTGATGACGCAAGACTGAAATTTGAAATAAGCACAGTTCTGTCTAAGGAGGGGATTGAAGTCTGCACGGTATCGTCCAATGGTAGACCAGATGAGGTGAAATTTGCTGTCCCACTTCTGGATCTGGACCTTGCCAAACTGGTTCCTGGATGTCCTTGGAAACTTCCTCAAAAGATCCATTTGCAGGCTGTTTTTCCAATTAGCAGAAGTTACTCCTCTGTTCCTTCTGCACCACGACTCAAATTAGTCTCAACCCCAGATTTGAAGTCATTTTTCTCAGTTGATGATGTTAAACTCCCTCCATGGTTAGATGGAATGTGCATGGCTGAGTATCTTCCTAACTTGGAAGAAAATCTTAAAATCCAGGTTGTGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTTTTGGAAGGCCATTAGAGGCTGATCCGATTTTTTGCAGAAAAGCTACGATTCTTTCCATCTCAGGGATTTTCACTTTTCTGGTCCACTTTGTCATTCCCCTCCAATTCCCTAAGCATCAACCTGTACTGACATTAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAGCTCCAGTAAATGACTATCCCTGGAGCCCTAGATGGGATCCAACAGAAATGGTTGAACGCATCTATGACTTTTTGGTTGACGAGTGCCAAAC TTTCAAGAAGTTTTGCAGCGATTCTATCCCTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAAGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACA CTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGCTCCTGCCATGTACATACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAGTACTACA ] [+] EMBL AK059304 [ GAGAGAGAGGGGAAGCGTCAACCTCCCGAATCCATCGCCGCCGCCGCCGCCGCCGGCGATGTCTCCGCCGGCCGACACCGCCGCGCTCGCCTCCACGTCCGGCGCCCCGCTCGCGCCCCTCGTCGCCGCCCAGCTCAACTTCGTCCTCTCCCAAGCCAACCTCCCCATCAGGGTGGGGCAGATCTGGTCCGGATGCCGCGACGGCCGCTACGCCGATCGCTTCACGCTCGCCATCCCCTTCTGCCTCGACTACGTCTACTGGGACTTCCTGTACAATGCGCTGTCGCCGAAGGTGGCGCCGGATGTGGTGTTCGGCCCGGACGACGAGGGGTTTCAGCCGCTAGTCGATTTCGATGAGACCGGGAGTGGGGAGAAGAGCTGCTTGGCAAATTGGGATTGCCGGGACACCTCGGCCCTCCTCTCTCTCATCAAAGAGCTCCGTGAATTTTATATTGAATACCAAAAGAAGCGGGCAGCCGAGGTTGATGACGCAAGACTGAAATTTGAAATAAGCACAGTTCTGTCTAAGGAGGGGATTGAAGTCTGCACGGTATCGTCCAATGGTAGACCAGATGAGGTGAAATTTGCTGTCCCACTTCTGGATCTGGACCTTGCCAAACTGGTTCCTGGATGTCCTTGGAAACTTCCTCAAAAGATCCATTTGCAGGCTGTTTTTCCAATTAGCAGAAGTTACTCCTCTGTTCCTTCTGCACCACGACTCAAATTAGTCTCAACCCCAGATTTGAAGTCATTTTTCTCAGTTGATGATGTTAAACTCCCTCCATGGTTAGATGGAATGTGCATGGCTGAGTATCTTCCTAACTTGGAAGAAAATCTTAAAATCCAGGTTGTGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTTTTGGAAGGCCATTAGAGGCTGATCCGATTTTTTGCAGAAAAGCTACGATTCTTTCCATCTCAGGGATTTTCACTTTTCTGGTCCACTTTGTCATTCCCCTCCAATTCCCTAAGCATCAACCTGTGCTGACATTAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAGCTCCAGTAAATGACTATCCCTGGAGCCCTAGATGGGATCCAACAGAAATGGTTGAACGCATCTATGACTTTTTGGTTGACGAGTGCCAAAC TTTCAAGAAGTTTTGCAGCGATTCTATCCCTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAAGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGGTAGGTGCGCTTCTGTCTGACAAGTAAATTGTGTACA CTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGCTCCTGCCATGTACATACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAG ] [+] EMBL BI811904 [ TTCCCTAAGCATCAACCTGTGCTGACATTAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAGCTCCAGTAAATGACTAT CCTGGAGCCCTAGATGGGATCCAACAGAAATGGTTGAACGCATCTATGATTTTTTGGTTGACGAGTGCC AAC TTTCAAGAAGTTTTGCAGCGATTCTATCCCTC ACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAGGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACA CTAGAGC AAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCC ATTGTTCCTGCCcaaaaa ] [+] EMBL CA757615 [ TGCCAAACGTTTCAAGAAGTTTTGCAGCGATTCTATCCCTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAGGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACA CTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGTTCCTGCCATGTACATACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAGTACTACAAAAAAAA] [+] EMBL BQ908531 [ ccgGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACACCTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGTTCCTGCCATGTACATACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAGTA AAAAAAAA ] consensusID : consensus_9142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [TACTTTACATCGTAGTGTAGTTGTCATGTTAATGGAATGACTAATCATCCTTTGAAAAATAGTGTGCGGAAAATAAGTGAGGATTGAGGAATATAAAGAAAAGGATAGACAGTAGATCTGATGCTATTGTTGAATTGTTTAGGTGATTCAAGCAAGAAAAAATTTCCTGTATTTCAATCTTATTATTTAGTGGAAGTACCTTTATGCATAAAATGTACATCCTTTCCCATTATTTTAAGCATACTAGACTTACTGGAAACTAGCTACTACTGAATCATTTATCAGTTAGATGAGGTATTGCTAAAGGTAGCATGGCATAGCATTAATCGTGCAACTCGTGTCTGTTATACAAAACTTATGTTTCTAATCTATACCGAAGGTTGTGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTTTTGGAAGGCCATTAGAGGCTGATC] [+] EMBL CF323565 [TACTTTACATCGTAGTGTAGTTGTCATGTTAATGGAATGACTAATCATCCTTTGAAAAATAGTGTGCGGAAAATAAGTGAGGATTGAGGAATATAAAGAAAAGGATAGACAGTAGATCTGATGCTATTGTTGAATTGTTTAGGTGATTCAAGCAAGAAAAAATTTCCTGTATTTCAATCTTATTATTTAGTGGAAGTACCTTTATGCATAAAATGTACATCCTTTCCCATTATTTTAAGCATACTAGACTTACTGGAAACTAGCTACTACTGAATCATTTATCAGTTAGATGAGGTATTGCTAAAGGTAGCATGGCATAGCATTAATCGTGCAACTCGTGTCTGTTATACAAAACTTATGTTTCTAATCTATACCGAAGGTTGTGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTTTTGGAAGGCCATTAGAGGCTGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9142#0 CTTTGTAAAAAAAAAAAAACAACTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAA 60 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 GCGTCAACCTCCCGAATCCATCGCCGCCGCCGCCGCCGCCGGCGATGTCTCCGCCGGCCG 120 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 ACACCGCCGCGCTCGCCTCCACGTCCGGCGCCCCGCTCGCGCCCCTCGTCGCCGCCCAGC 180 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 TCAACTTCGTCCTCTCCCAAGCCAACCTCCCCATCAGGGTGGGGCAGATCTGGTCCGGAT 240 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 GCCGCGACGGCCGCTACGCCGATCGCTTCACGCTCGCCATCCCCTTCTGCCTCGACTACG 300 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 TCTACTGGGACTTCCTGTACAATGCGCTGTCGCCGAAGGTGGCGCCGGATGTGGTGTTCG 360 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 GCCCGGACGACGAGGGGTTTCAGCCGCTAGTCGATTTCGATGAGACCGGGAGTGGGGAGA 420 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 AGAGCTGCTTGGCAAATTGGGATTGCCGGGACACCTCGGCCCTCCTCTCTCTCATCAAAG 480 consensus_9142#1 ---------------------------------------------TACTTTACATCGTAG 15 * * **** ** consensus_9142#0 AGCTCCGTGAATTTTATATTGAATACCAAAAGAAGCGGGCAGCCGAGGTTGATGACGCAA 540 consensus_9142#1 TGTAGTTGTCATGTTA-ATGGAATGACTAATCATCCTTTGAAAAATAGTGTGCGGAAAAT 74 * ** *** ** **** * ** * * * ** * * consensus_9142#0 GACTGAAATTTGAAATAAGCACAGTTCTGTCTAAGGAGGGGAT-TGAAGTCTGCACGGTA 599 consensus_9142#1 AAGTGAGGATTGAGGAATATAAAGAAAAGGATAGACAGTAGATCTGATGCTATTGTTGAA 134 * *** **** * * ** * ** ** *** *** * * * consensus_9142#0 TCGTCCAATGGTAGACCAGATGAGGTGAAATTTGCTGTCCCACTTCTGGATCTGGACCTT 659 consensus_9142#1 TTGTTTA--GGTGATTCAAGCAAGAAAAAATTTCCTGT-----------ATTTCAATCTT 181 * ** * *** ** ** ****** **** ** * * *** consensus_9142#0 GCCAAACTGGTTCCTGGATGTCCTTGGAAACTTCCTCAAAAGATCCATTTGCAGGCTGTT 719 consensus_9142#1 -----ATTATTTAGTGGAAGTACCTTTATGCAT----AAAATGTACATCCTTTCCCATTA 232 * * ** **** ** * * * * * **** * *** * * consensus_9142#0 TTTCCAATTAGCAGAAGTTACTCCTCTGTTCCTTCTGCACCACGACTCAAATTAGTCTCA 779 consensus_9142#1 TTTTAAGCATACTAGACTTACTGGAAACTAGCTACTACTGAATCATTTA--TCAGT---- 286 *** * * * ***** * ** ** * * * * * * *** consensus_9142#0 ACCCCAGATTTGAAGTCATTTTTCTCAGTTG-ATGATGTTAAACTCCCTCCATGGTTAG- 837 consensus_9142#1 ----TAGAT---GAGGTATTGCTAAAGGTAGCATGGCATAGCATTAATCGTGCAACTCGT 339 **** ** *** * ** * *** * * * * * consensus_9142#0 ATGGAATGTGCATGGCTGAGTATCTTCCTAACTTGGAAGAAAATCTTAAAATCCAGGTTG 897 consensus_9142#1 GTCTGTTATACAAAACT---TATGTTTCTAATCTATACCGAA-------------GGTTG 383 * * * ** ** *** ** **** * * ** ***** consensus_9142#0 TGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTT 957 consensus_9142#1 TGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTT 443 ************************************************************ consensus_9142#0 TTGGAAGGCCATTAGAGGCTGATCCGATTTTTTGCAGAAAAGCTACGATTCTTTCCATCT 1017 consensus_9142#1 TTGGAAGGCCATTAGAGGCTGATC------------------------------------ 467 ************************ consensus_9142#0 CAGGGATTTTCACTTTTCTGGTCCACTTTGTCATTCCCCTCCAATTCCCTAAGCATCAAC 1077 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 CTGTGCTGACATTAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAG 1137 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 CTCCAGTAAATGACTATCCCTGGAGCCCTAGATGGGATCCAACAGAAATGGTTGAACGCA 1197 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 TCTATGACTTTTTGGTTGACGAGTGCCAAACTTTCAAGAAGTTTTGCAGCGATTCTATCC 1257 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 CTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTC 1317 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 GCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAAGAAGCC 1377 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 TAGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATT 1437 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 GTGTACACTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCC 1497 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 TAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGTTCCTGCCATGTACA 1557 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 TACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGA 1617 consensus_9142#1 ------------------------------------------------------------ consensus_9142#0 CCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAGTACTACAAAAAAAA 1672 consensus_9142#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||