These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1148 fasta sequence [AGCTACATATGGCAAGGTTCTCAAAGCTACAAGCTCTGTTTCTAGTATTCCTCTTTCAACTTAACTTGCAATCGCAATGGTCATATGGCCTTCAGAGAGATCAAAGCCGACTATACATCGTTTACCTTGGGGAGAGGCAGCACGAAGATGCTGATCTTGTCACTGCATCACACCATGATATGCTCACCTCAATTCTTGGGAGCAAGGAGGAGACTCTCAGGTCGATTGTCTACAGCTACAGGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGGGCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAAGTTGGGATTTTCTTGGACTTGATTACAAGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCAGCCACCATGGATCGGTCTTTTCCTGTAGTGATCACCTTGGGAAATAATGAAAAGTTTGTGGCACAATCCTTCGTCGTAACAGGAAGTGCGAGTCAGTTCAGTGAAATACAAACGTATGACAATGGCAAC] [+] EMBL CB628045 [AGCTACATATGGCAAGGTTCTCAAAGCTACAAGCTCTGTTTCTAGTATTCCTCTTTCAACTTAACTTGCAATCGCAATGGTCATATGGCCTTCAGAGAGATCAAAGCCGACTATACATCGTTTACCTTGGGGAGAGGCAGCACGAAGATGCTGATCTTGTCACTGCATCACACCATGATATGCTCACCTCAATTCTTGGGAGCAAGGAGGAGACTCTCAGGTCGATTGTCTACAGCTACAGGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGGGCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAAGTTGGGATTTTCTTGGACTTGATTACAAGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGC ] [+] EMBL CB633730 [ CTAGACATGGCAAGGTTCTCAAAGCTACAAGCTCTGTTTCTAGTATTCCTCTTTCAACTTAACTTGCAATCGCAATGGTCATATGGCCTTCAGAGAGATCAAAGCCGACTATACATCGTTTACCTTGGGGAGAGGCAGCACGAAGATGCTGATCTTGTCACTGCATCACACCATGATATGCTCACCTCAATTCTTGGGAGCAAGGAGGAGACTCTCAGGTCGATTGTCTACAGCTACAGGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGGGCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAAGTTGGGATTTTCTTGGACTTGATTACAAGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCT ] [+] EMBL CB631496 [ AGCTACACCCTCTGTTTCTAGTATTCCTCTTTCAACTTAACTTGCAATCGCAATGGTCATATGGCCTTCAGAGAGATCAAAGCCGACTATACATCGTTTACCTTGGGGAGAGGCAGCACGAAGATGCTGATCTTGTCACTGCATCACACCATGATATGCTCACCTCAATTCTTGGGAGCAAGGAGGAGACTCTCAGGTCGATTGTCTACAGCTACAGGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGGGCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAAGTTGGGATTTTCTTGGACTTGATTACAAGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTG ] [+] EMBL CB627085 [ TCTCAGGCCTATTGTCTACAGCTACAGGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGGGCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAAGTTGGGATTTTCTTGGACTTGATTACAAGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAA ] [+] EMBL CB627959 [ ATTACCCGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCAGCCACCATGGATCGGTCTTTTCCTGTAGTGATCACCTTGGGAAATAATGAAAAGTTTGTGGCACAATCCTTCGTCGTAACAGGAAGTGCGAGTCAGTTCAGTGAAATACAAACGTATGACAATGGCAAC] consensusID : consensus_9143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [AATGGGAGGGAATGGGGTAATTAAATTAGTACAATTGAATTGCCTATCTTCTGGCTTAATTTTTTTTTGTGAATGCATGCAAAGCGCTAAGATGTTAGTTTGAATTTTAGTTAATTTGCTTTTGTGTTTGCAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCAGCCACCATGGATCGGTCTTTTCCTGTAGTGATCCCCAAGGGAAATAATGAAAAGTTTGTGGTATGCCTAAAA] [-] EMBL CB630079 [AATGGGAGGGAATGGGGTAATTAAATTAGTACAATTGAATTGCCTATCTTCTGGCTTAATTTTTTTTTGTGAATGCATGCAAAGCGCTAAGATGTTAGTTTGAATTTTAGTTAATTTGCTTTTGTGTTTGCAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCAGCCACCATGGATCGGTCTTTTCCTGTAGTGATCCCCAAGGGAAATAATGAAAAGTTTGTGGTATGCCTAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9143#0 AGCTACATATGGCAAGGTTCTCAAAGCTACAAGCTCTGTTTCTAGTATTCCTCTTTCAAC 60 consensus_9143#1 ------------------------------------------------------------ consensus_9143#0 TTAACTTGCAATCGCAATGGTCATATGGCCTTCAGAGAGATCAAAGCCGACTATACATCG 120 consensus_9143#1 ------------------------------------------------------------ consensus_9143#0 TTTACCTTGGGGAGAGGCAGCACGAAGATGCTGATCTTGTCACTGCATCACACCATGATA 180 consensus_9143#1 ------------------------------------------------------------ consensus_9143#0 TGCTCACCTCAATTCTTGGGAGCAAGGAGGAGACTCTCAGGTCGATTGTCTACAGCTACA 240 consensus_9143#1 ------------------------------------------------------------ consensus_9143#0 GGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGG 300 consensus_9143#1 ------------------------------------------------------------ consensus_9143#0 GCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAA 360 consensus_9143#1 -----------------AATGGGA--GGGAATGGGGTA-ATTAAATTAGTACAAT-TGAA 39 * ** * * ** ** * *** ***** *** consensus_9143#0 GTTGGGATTTTCTTGGACTTGATTACAAGCCGACAA-ATGGGCTGCTCGCGAAAGCTAGA 419 consensus_9143#1 TTGCCTATCTTCT--GGCTTAATTTTTTTTTGTGAATGCATGCAAAGCGCTAAGATGTTA 97 * ** **** * *** *** * ** ** *** ** * consensus_9143#0 TATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGC 479 consensus_9143#1 GTTTGAATTTTAGTTAAT-TTGCTTTTGTGTTTGCAGGAATCACACCCGAGTCGTCAAGC 156 * ** ** * * *** * * ** ************************** consensus_9143#0 TTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGT 539 consensus_9143#1 TTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGT 216 ************************************************************ consensus_9143#0 CCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTAC 599 consensus_9143#1 CCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTAC 276 ************************************************************ consensus_9143#0 GATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCAT 659 consensus_9143#1 GATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCAT 336 ************************************************************ consensus_9143#0 GGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGG 719 consensus_9143#1 GGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGG 396 ************************************************************ consensus_9143#0 CTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCT 779 consensus_9143#1 CTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCT 456 ************************************************************ consensus_9143#0 TGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATG 839 consensus_9143#1 TGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATG 516 ************************************************************ consensus_9143#0 GACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAA 899 consensus_9143#1 GACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAA 576 ************************************************************ consensus_9143#0 CAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAAC 959 consensus_9143#1 CAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAAC 636 ************************************************************ consensus_9143#0 GATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCA 1019 consensus_9143#1 GATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCA 696 ************************************************************ consensus_9143#0 GCCACCATGGATCGGTCTTTTCCTGTAGTGATCACCTTGGGAAATAATGAAAAGTTTGTG 1079 consensus_9143#1 GCCACCATGGATCGGTCTTTTCCTGTAGTGATCCCCAAGGGAAATAATGAAAAGTTTGTG 756 ********************************* ** ********************** consensus_9143#0 GCACAATCCTTCGTCGTAACAGGAAGTGCGAGTCAGTTCAGTGAAATACAAACGTATGAC 1139 consensus_9143#1 GTATG--CCTAAAA---------------------------------------------- 768 * * *** consensus_9143#0 AATGGCAAC 1148 consensus_9143#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||