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Oryza sativa
cluster # 9150 cluster # 9150       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9150#0 length = 1659 sequences # 6  

consensusID : consensus_9150#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1659
fasta sequence
                              [TGTGATCCCAAACTTCCACTATCACAGCATTTGGAGGGATCCTAGCAAATTTAGTGATATTTATGATGAGGAACACTTCGTCCAACGATTGAAAAATGATGTCCGAGTAGTTGACAAGGTGCCTGAGTTTATTATGGAGAGGTTTGGTCACAATTTGAGTAATGTGTTTAATTTCAAGATAAAGGCTTGGTCTTCTATCCGATACTACAAAGAAGCTGTTCTTCCTAAGTTGATCGAAGAAAGGCTTATAAGGATATCACCTTTTGCAAACCGACTGTCCTTTGATGCTCCATCAGCTGTTCAACGGTTGAGATGTCTGGCTAATTTTGAAGCCTTAAAGTTTTCTAAGCCGATCACAACTTTATCTGACATTTTAGTATCTCGAATGAGAGAAAAAAGTGCCGAAAACAATGGGAAATATGTAGCGGTGCATCTCCGTTTTGAAGAGGATATGGTTGCATTCTCTTGTTGTGTCTTCGACGGGGGTGAAAAGGAGAAGAAGGAACTGGATGCAGCCAGGGAGAGGGGTTGGAGAGGAAAGTTTACTAGGCCAGGACGTGTAATAAGGCCTGGAGCAATAAGGATGAATGGGAAATGTCCACTTACACCTTTGGAGGTTGGGTTAATGCTTCGCGGGATGGGTTTCAGCAATAACACCGCGATCTATTTGGCTTCTGGGAGGATATATAAATCAGAGAAGAACATGGCACCTCTCCTTGAAATGTTTCCTCTCTTGCAGACAAAAGAAACATTGGCATCAGATGAAGAACTTGCTCCATTCAAGAATTTCTCTTCAAGGATGGCAGCTATCGATTACACAGTATGTGTTCATAGTGAAGTTTTCGTGACTACCCAAGGTGGAAATTTTCCTCATTTCCTTCTTGGTCATAGGAGATACATTTATGGTGGTCATTCGAAGACAATTAAGCCTGATAAAAGAAGATTAGCCATACTCTTCGATAGTCCACGTATCGGATGGAAGTCACTGAAACGTCAGTTGGTGAATATGAGAACACACAGCGATGCCAAGGGTATTGAAATGAAAAGAGCAAATG-AATC-TATATACACCTTTCCATGCCCCGACTGCATGTGCCGCTCAAACAAATCAGAACACTCTAAATCCATCCAGGCTAGATAGCATCTACTAGTCTTGACTTGATTGACTGACCTTGATTCTTTTTGGTACCATAGCATGTGCTCATTCTTTGCTTGCCGTCTGGTGGTGTGATGTCTGTCCGGTCTCCAAGCACCCTACTGCAGCATTGCTCATCTATTACACTCCCCAGGTGGATTTTGCGGATATATTAGATTCATATTAGCTAAGCTAATCCTGGGGCTAACAATACACCGATCTGAGTCTCAATAGATGTGTCTAACCGTTTCTAGGTCTAATACCCTGACAATGTAGTGCCAGTCCGCTTGATGTAATAGTAGTTCCCTTGTACATTTCTCAGCTAGGAAGAAATTTGTCATACAAATTTTGAGAAGAGGAACAATGCTTATTCTGATATAATTTATTGATCCTTTCATCTGAAAGCTAGCTCTTTGTCTAACTATTCTTTTGATTATTGTATCAAGGGAGGGAGGTTTTCCTTCTTCTTTCATTTGTACAATTTGCCAATTTCAGTTTGAGTCAGAAACAGGCAAACAGCTAAAAGT]

[+] EMBL AK060210             [TGTGATCCCAAACTTCCACTATCACAGCATTTGGAGGGATCCTAGCAAATTTAGTGATATTTATGATGAGGAACACTTCGTCCAACGATTGAAAAATGATGTCCGAGTAGTTGACAAGGTGCCTGAGTTTATTATGGAGAGGTTTGGTCACAATTTGAGTAATGTGTTTAATTTCAAGATAAAGGCTTGGTCTTCTATCCGATACTACAAAGAAGCTGTTCTTCCTAAGTTGATCGAAGAAAGGCTTATAAGGATATCACCTTTTGCAAACCGACTGTCCTTTGATGCTCCATCAGCTGTTCAACGGTTGAGATGTCTGGCTAATTTTGAAGCCTTAAAGTTTTCTAAGCCGATCACAACTTTATCTGACATTTTAGTATCTCGAATGAGAGAAAAAAGTGCCGAAAACAATGGGAAATATGTAGCGGTGCATCTCCGTTTTGAAGAGGATATGGTTGCATTCTCTTGTTGTGTCTTCGACGGGGGTGAAAAGGAGAAGAAGGAACTGGATGCAGCCAGGGAGAGGGGTTGGAGAGGAAAGTTTACTAGGCCAGGACGTGTAATAAGGCCTGGAGCAATAAGGATGAATGGGAAATGTCCACTTACACCTTTGGAGGTTGGGTTAATGCTTCGCGGGATGGGTTTCAGCAATAACACCGCGATCTATTTGGCTTCTGGGAGGATATATAAATCAGAGAAGAACATGGCACCTCTCCTTGAAATGTTTCCTCTCTTGCAGACAAAAGAAACATTGGCATCAGATGAAGAACTTGCTCCATTCAAGAATTTCTCTTCAAGGATGGCAGCTATCGATTACACAGTATGTGTTCATAGTGAAGTTTTCGTGACTACCCAAGGTGGAAATTTTCCTCATTTCCTTCTTGGTCATAGGAGATACATTTATGGTGGTCATTCGAAGACAATTAAGCCTGATAAAAGAAGATTAGCCATACTCTTCGATAGTCCACGTATCGGATGGAAGTCACTGAAACGTCAGTTGGTGAATATGAGAACACACAGCGATGCCAAGGGTATTGAAATGAAAAGAGCAAATG AATC TATATACACCTTTCCATGCCCCGACTGCATGTGCCGCTCAAACAAATCAGAACACTCTAAATCCATCCAGGCTAGATAGCATCTACTAGTCTTGACTTGATTGACTGACCTTGATTCTTTTTGGTACCATAGCATGTGCTCATTCTTTGCTTGCCGTCTGGTGGTGTGATGTCTGTCCGGTCTCCAAGCACCCTACTGCAGCATTGCTCATCTATTACACTCCCCAGGTGGATTTTGCGGATATATTAGATTCATATTAGCTAAGCTAATCCTGGGGCTAACAATACACCGATCTGAGTCTCAATAGATGTGTCTAACCGTTTCTAGGTCTAATACCCTGACAATGTAGTGCCAGTCCGCTTGATGTAATAGTAGTTCCCTTGTACATTTCTCAGCTAGGAAGAAATTTGTCATACAAATTTTGAGAAGAGGAACAATGCTTATTCTGATATAATTTATTGATCCTTTCATCTGAAAGCTAGCTCTTTGTCTAACTATTCTTTTGATTATTGTATCAAGGGAGGGAGGTTTTCCTTCTTCTTTCATTTGTACAATTTGCCAATTTCAGTTTGAGTCAGAAACAGGCAAACAGCTAAAAGT]
[+] EMBL CF323900             [                                                                                   AACGATTGAAAAATGATGTCCGAGTAGTTGACAAGGTGCCTGAGTTTATTATGGAGAGGTTTGGTCACAATTTGAGTAATGTGTTTAATTTCAAGATAAAGGCTTGGTCTTCTATCCGATACTACAAAGAAGCTGTTCTTCCTAAGTTGATCGAAGAAAGGCTTATAAGGATATCACCTTTTGCAAACCGACTGTCCTTTGATGCTCCATCAGCTGTTCAACGGTTGAGATGTCTGGCTAATTTTGAAGCCTTAAAGTTTTCTAAGCCGATCACAACTTTATCTGACATTTTAGTATCTCGAATGAGAGAAAAAAGTGCCGAAAACAATGGGAAATATGTAGCGGTGCATCTCCGTTTTGAAGAGGATATGGTTGCATTCTCTTGTTGTGTCTTCGACGGGGGTGAAAAGGAGAAGAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB671243             [                                                                                                                      GTGCCTGAGTTTATTATGGAGAGGTTTGGTCACAATTTGAGTAATGTGTTTAATTTCAAGATAAAGGCTTGGTCTTCTATCCGATACTACAAAGAAGCTGTTCTTCCTAAGTTGATCGAAGAAAGGCTTATAAGGATATCACCTTTTGCAAACCGACTGTCCTTTGATGCTCCATCAGCTGTTCAACGGTTGAGATGTCTGGCTAATTTTGAAGCCTTAAAGTTTTCTAAGCCGATCACAACTTTATCTGACATTTTAGTATCTCGAATGAGAGAAAAAAGTGCCGAAAACAATGGGAAATATGTAGCGGTGCATCTCCGTTTTGAAGAGGATATGGTTGCATTCTCTTGTTGTGTCTTCGACGGGGGTGAAAAGGAGAAGAAGGAACTGGATGCAGCCAGGGAGAGGGGTTGGAGAGGAAAGTTTACTAGGCCAGGACGTGTAATAAGGCCTGGAGCAATAAGGATGAATGGGAAATGTCCACTTACACCTTTGGAGGTTGGGTTAATGCTTCGCGGGATGGGTTTCAGCAATAACACCGCGATCTATTTGGCTTCTGGGAGGATATATAAATCAGAGAAGAACATGGCACCTCTCCTTGAAATGTTTCCTCTCTTGCAGACAAAAGAAACATTGGCATCAGATGAAGAACTTGCTCCATTCAAGAATTTCTCTTCAAGGATGGCAGCTATCGATTACACAGTATGTGTTCATAGTGAAGTTTTCGTGACTACCCAAGGTGGAAATTTTCCTCATTTCCTTCTTGGTCATAGGAGATACATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB671244             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAACATTGGCATCAGATGAAGAACTTGCTCCATTCAAGAATTTCTCTTCAAGGATGGCAGCTATCGATTACACAGTATGTGTTCATAGTGAAGTTTTCGTGACTACCCAAGGTGGAAATTTTCCTCATTTCCTTCTTGGTCATAGGAGATACATTTATGGTGGTCATTCGAAGACAATTAAGCCTGATAAAAGAAGATTAGCCATACTCTTCGATAGTCCACGTATCGGATGGAAGTCACTGAAACGTCAGTTGGTGAATATGAGAACACACAGCGATGCCAAGGGTATTGAAATGAAAAGAGCAAATG AATC TATATACACCTTTCCATGCCCCGACTGCATGTGCCGCTCAAACAAATCAGAACACTCTAAATCCATCCAGGCTAGATAGCATCTACTAGTCTTGACTTGATTGACTGACCTTGATTCTTTTTGGTACCATAGCATGTGCTCATTCTTTGCTTGCCGTCTGGTGGTGTGATGTCTGTCCGGTCTCCAAGCACCCTACTGCAGCATTGCTCATCTATTACACTCCCCAGGTGGATTTTGCGGATATATTAGATTCATATTAGCTAAGCTAATCCTGGGGCTAACAATACACCGATCTGAGTCTCAATAGATGTGTCTAACCGTTTCTAGGTCTAATACCCTGACAATGTAGTGCCAGTCCGCTTGATGTAATAGTAGTTCCCTTGTACATTTCTCAGCTAGGAAGAAATTTGTCATACAAAGTTTGAGAAGAGGAACAATGCTTATTCTGATAT                                                                                                                                                    ]
[+] EMBL CF324581             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAGAACTTGCTCCATTCAAGAATTTCTCTTCAAGGATGGCAGCTATCGATTACACAGTATGTGTTCATAGTGAAGTTTTCGTGACTACCCAAGGTGGAAATTTTCCTCATTTCCTTCTTGGTCATAGGAGATACATTTATGGTGGTCATTCGAAGACAATTAAGCCTGATAAAAGAAGATTAGCCATACTCTTCGATAGTCCACGTATCGGATGGAAGTCACTGAAACGTCAGTTGGTGAATATGAGAACACACAGCGATGCCAAGGGTATTGAAATGAAAAGAGCAAATG AATC TATATACACCTTTCCATGCCCCGACTGCATGTGCCGCTCAAACAAATCAGAACACTCTAAATCCATCCAGGCTAGATAGCATCTACTAGTCTTGACTTGATTGACTGACCTTGATTCTTTTTGGTACCATAGCATGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU166944             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cnAAATGAAATCTTATATACACCTTTCCATGCCCCGACTGCATGTGCCGCTCAAACAAATCAGANCACTCTAAATCCATCCAGGCTAGATAGCATCTACTAGTCTTGACTTGATTGACTGACCTTGATTCTTTTTGGTACCATAGCATGTGCTCATTCTTTGCTTGCCGTCTGGTGGTGTGATGTCTGTCCGGTCTCCAAGCACCCTACTGCAGCATTGCTCATCTATTACACTCCCCAGGTGGATTTTGCGGATATATTAGATTCATATTAGCTAAGCTAATCCTGGGGCTAACAATACACCGATCTGAGTCTCAATAGATGTGTCTAACCGTTTCTAGGTCTAATACCCTGACAATGTAGTGCCAGTCCGCTTGATGTAATAGTAGTTCCCTTGTACATTTCTCAGCTAGGAAGAAATTTGTCATACAAATTTTGAGAAaaa                                                                                                                                                                         ]


>consensus_9150#0 TGTGATCCCAAACTTCCACTATCACAGCATTTGGAGGGATCCTAGCAAATTTAGTGATAT TTATGATGAGGAACACTTCGTCCAACGATTGAAAAATGATGTCCGAGTAGTTGACAAGGT GCCTGAGTTTATTATGGAGAGGTTTGGTCACAATTTGAGTAATGTGTTTAATTTCAAGAT AAAGGCTTGGTCTTCTATCCGATACTACAAAGAAGCTGTTCTTCCTAAGTTGATCGAAGA AAGGCTTATAAGGATATCACCTTTTGCAAACCGACTGTCCTTTGATGCTCCATCAGCTGT TCAACGGTTGAGATGTCTGGCTAATTTTGAAGCCTTAAAGTTTTCTAAGCCGATCACAAC TTTATCTGACATTTTAGTATCTCGAATGAGAGAAAAAAGTGCCGAAAACAATGGGAAATA TGTAGCGGTGCATCTCCGTTTTGAAGAGGATATGGTTGCATTCTCTTGTTGTGTCTTCGA CGGGGGTGAAAAGGAGAAGAAGGAACTGGATGCAGCCAGGGAGAGGGGTTGGAGAGGAAA GTTTACTAGGCCAGGACGTGTAATAAGGCCTGGAGCAATAAGGATGAATGGGAAATGTCC ACTTACACCTTTGGAGGTTGGGTTAATGCTTCGCGGGATGGGTTTCAGCAATAACACCGC GATCTATTTGGCTTCTGGGAGGATATATAAATCAGAGAAGAACATGGCACCTCTCCTTGA AATGTTTCCTCTCTTGCAGACAAAAGAAACATTGGCATCAGATGAAGAACTTGCTCCATT CAAGAATTTCTCTTCAAGGATGGCAGCTATCGATTACACAGTATGTGTTCATAGTGAAGT TTTCGTGACTACCCAAGGTGGAAATTTTCCTCATTTCCTTCTTGGTCATAGGAGATACAT TTATGGTGGTCATTCGAAGACAATTAAGCCTGATAAAAGAAGATTAGCCATACTCTTCGA TAGTCCACGTATCGGATGGAAGTCACTGAAACGTCAGTTGGTGAATATGAGAACACACAG CGATGCCAAGGGTATTGAAATGAAAAGAGCAAATGAATCTATATACACCTTTCCATGCCC CGACTGCATGTGCCGCTCAAACAAATCAGAACACTCTAAATCCATCCAGGCTAGATAGCA TCTACTAGTCTTGACTTGATTGACTGACCTTGATTCTTTTTGGTACCATAGCATGTGCTC ATTCTTTGCTTGCCGTCTGGTGGTGTGATGTCTGTCCGGTCTCCAAGCACCCTACTGCAG CATTGCTCATCTATTACACTCCCCAGGTGGATTTTGCGGATATATTAGATTCATATTAGC TAAGCTAATCCTGGGGCTAACAATACACCGATCTGAGTCTCAATAGATGTGTCTAACCGT TTCTAGGTCTAATACCCTGACAATGTAGTGCCAGTCCGCTTGATGTAATAGTAGTTCCCT TGTACATTTCTCAGCTAGGAAGAAATTTGTCATACAAATTTTGAGAAGAGGAACAATGCT TATTCTGATATAATTTATTGATCCTTTCATCTGAAAGCTAGCTCTTTGTCTAACTATTCT TTTGATTATTGTATCAAGGGAGGGAGGTTTTCCTTCTTCTTTCATTTGTACAATTTGCCA ATTTCAGTTTGAGTCAGAAACAGGCAAACAGCTAAAAGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)