These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1905 fasta sequence [CGGGGTCGCGGCGGCTAACCGTCTCTCTCGCCGCCGTCTCGCACCTCGCGTCGCCGCCGCCGCCGCGAGTGTCGGAGCGGAGGAGAAGGGGAGGGGGGCCATGGCGAAGGGCGACGACGCGCTGGCGCGGAAGCGCAACAAGGTGCGGCGGAAGCGGATGCGCAGCAGCGAGAACGCCGTGTCGGCCCGCGTCGCCGGCATCATCGCCTCCAAGCGCCGCCGCAAGTCCGGCAAGCGGCGGGCCTGCGAGGGCATGTGCTTCTCCCTCCCCACCCCGGAGGACCCCTTCAACGACCGCCACGGCAAGAAGCGGAAGGGCGACGACGAGCCGACCGGAGACGCCCCCGCCGCCGCCGCCGCAGGCAGGGACGAATCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATTCGAGCGCCAAGAAGCAGCCGGCGAGGGAGGCCGCCGCCGCCGCCGCCGCGAACGCCAAGTCTAGGGAGAAGGACGGGGCGGAGTACGACCGGCCGTCCAAGTTCCTGGTGGTCTGCCTCAACGCCATCCGAGACGCGGCGGCGTCCGAGGACGGCGGCGGCGGCGGCATCCACGACACCGGGTCGTGGGGCGTGGAGCTCTGGAATTGCTGCTCGGCTGCGCCGCCTACGCACGTGCTCGACACCAGCGGCGAGTGCGCCACCCGGGAGAAGACGGCTTGGCTCGTCTCCACAGCCTGCGACATCGTCGCCAGGAAGGAGAAGCTCGCTGTGGTCGTCTCTTGCCCCTTCCTACTCTACCTCGTCCCCTCCCAGGAAAAGGCCGTGCAAGTGCGTTCGATTTGCAAGCCTCTGAAATCACTTGGTATCCATTCCGTCAGTCTGCATCCCGGCGCTTCCATTGAACACCAGATTTCTGGATTAAAGAGTTGCGAACCGGAGTTCCTTATATCCACGCCAGAGAGGCTGCTTGAACTAATAGCTTTAAAGGCGATTGACATATCAGGCGTATCGATGCTGGTGATTGATGGTCTGAAGTGTTTCACGGACCTTAATGTCAGCGACAAGCTTTGTTCTATTAGGGATGCCATATTGAGCAACCCTCAAATAACTATATTCAGTGACCCGTCTGACCGAAGGGTAGCTGCACTGGCAACAAAACTAGTCGGTGGAAAAAAGATCACAAGGCTTTGTACGAATGATTCAGTTACTTCTAGAGGTGCATTCATAACACAAAAGATACACATATGCCCATCAAAGGACCAAAAGGCACCGAAGGTGAAGGAAATTCTTGAACAAATTCTAAATGATCATGCTAGAAAGACTGCAAAGGTCCTACTGGTAACCGCAAGTGATCATGAAGCACAGCATCTGTCATCGTCCTTGAAATTGCAAAATTGTACCGTGACCAATGACTCGCATGGCAACTCTTTTACCATATGCAGCAGTGTTGGGCTGATTAATGTCCTTGTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACTGTGTTGGTTGCAGACTTGCCTCCTTCAGTTGACGAATACATTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTG-TGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCAAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGATCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTCACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCTGTGAGAACCAATTGCTTTTGCATTCATTAAC] [+] EMBL AK066803 [CGGGGTCGCGGCGGCTAACCGTCTCTCTCGCCGCCGTCTCGCACCTCGCGTCGCCGCCGCCGCCGCGAGTGTCGGAGCGGAGGAGAAGGGGAGGGGGGCCATGGCGAAGGGCGACGACGCGCTGGCGCGGAAGCGCAACAAGGTGCGGCGGAAGCGGATGCGCAGCAGCGAGAACGCCGTGTCGGCCCGCGTCGCCGGCATCATCGCCTCCAAGCGCCGCCGCAAGTCCGGCAAGCGGCGGGCCTGCGAGGGCATGTGCTTCTCCCTCCCCACCCCGGAGGACCCCTTCAACGACCGCCACGGCAAGAAGCGGAAGGGCGACGACGAGCCGACCGGAGACGCCCCCGCCGCCGCCGCCGCAGGCAGGGACGAATCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATTCGAGCGCCAAGAAGCAGCCGGCGAGGGAGGCCGCCGCCGCCGCCGCCGCGAACGCCAAGTCTAGGGAGAAGGACGGGGCGGAGTACGACCGGCCGTCCAAGTTCCTGGTGGTCTGCCTCAACGCCATCCGAGACGCGGCGGCGTCCGAGGACGGCGGCGGCGGCGGCATCCACGACACCGGGTCGTGGGGCGTGGAGCTCTGGAATTGCTGCTCGGCTGCGCCGCCTACGCACGTGCTCGACACCAGCGGCGAGTGCGCCACCCGGGAGAAGACGGCTTGGCTCGTCTCCACAGCCTGCGACATCGTCGCCAGGAAGGAGAAGCTCGCTGTGGTCGTCTCTTGCCCCTTCCTACTCTACCTCGTCCCCTCCCAGGAAAAGGCCGTGCAAGTGCGTTCGATTTGCAAGCCTCTGAAATCACTTGGTATCCATTCCGTCAGTCTGCATCCCGGCGCTTCCATTGAACACCAGATTTCTGGATTAAAGAGTTGCGAACCGGAGTTCCTTATATCCACGCCAGAGAGGCTGCTTGAACTAATAGCTTTAAAGGCGATTGACATATCAGGCGTATCGATGCTGGTGATTGATGGTCTGAAGTGTTTCACGGACCTTAATGTCAGCGACAAGCTTTGTTCTATTAGGGATGCCATATTGAGCAACCCTCAAATAACTATATTCAGTGACCCGTCTGACCGAAGGGTAGCTGCACTGGCAACAAAACTAGTCGGTGGAAAAAAGATCACAAGGCTTTGTACGAATGATTCAGTTACTTCTAGAGGTGCATTCATAACACAAAAGATACACATATGCCCATCAAAGGACCAAAAGGCACCGAAGGTGAAGGAAATTCTTGAACAAATTCTAAATGATCATGCTAGAAAGACTGCAAAGGTCCTACTGGTAACCGCAAGTGATCATGAAGCACAGCATCTGTCATCATCCTTGAAATTGCAAAATTGTACCGTGACCAATGACTCGCATGGCAACTCTTTTACCATATGCAGCAGTGTTGGGCTGATTAATGTCCTTGTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACTGTGTTGGTTGCAGACTTGCCTCCTTCAGTTGACGAATACATTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTG TGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCAAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGATCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTCACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCTGTGAGAACCAATTGCTTTTGCATTCATTAAC] [+] EMBL CF324460 [ GGGCGTGGAGCTCTGGAATTGCTGCTCGGCTGCGCCGCCTACGCACGTGCTCGACACCAGCGGCGAGTGCGCCACCCGGGAGAAGACGGCTTGGCTCGTCTCCACAGCCTGCGACATCGTCGCCAGGAAGGAGAAGCTCGGTGTGGTCGTCTCTTGCCCCTTCCTACTCTACCTCGTCCCCTCCCAGGAAAAGGCCGCGCAAGTGCGTTCGATTTGCAAGCCTCTGAAATCACTTGGTATCCATTCCGTCAGTCTGCATCCCGGCGCTTCCATTGAACACCAGATTTCTGGATTAAAGAGTTGCGAACCGGAGTTCCTTATATCCACGCCAGAGAGGCTGCTTGAACTAATAGCTTTAAAGGC ] [+] EMBL CB626691 [ CCCTTCCTACTCTACCTCGTCCCCTCCCAGGAAAAGGCCGTGCAAGTGCGTTCGATTTGCAAGCCTCTGAAATCACTTGGTATCCATTCCGTCAGTCTGCATCCCGGCGCTTCCATTGAACACCAGATTTCTGGATTAAAGAGTTGCGAACCGGAGTTCCTTATATCCACGCCAGAGAGGCTGCTTGAACTAATAGCTTTAAAGGCGATTGACATATCAGGCGTATCGATGCTGGTGATTGATGGTCTGAAGTGTTTCACGGACCTTAATGTCAGCGACAAGCTTTGTTCTATTAGGGATGCCATATTGAGCAACCCTCAAATAACTATATTCAGTGACCCGTCTGACCGAAGGGTAGCTGCACTGGCAACAAAACTAGTCGGTGGAAAAAAGATCACAAGGCTTTGTACGAATGATTCAGTTACTTCTAGAGGTGCATTCATAACACAAAAGATACACATATGCCCATCAAAGGACCAAAAGGCACCGAAGGTGAAGGAAATTCTTGAACAAATTCTAAATGATCATGCTAGAAAGACTGCAAAGGTCCTACTGGTAACCGCAAGTGATCATGAAGCACAGCATCTGTCATCGTCCTTGAAATTGCAAAATTGTACCGTGACCAATGACTCGCATGGCAACTCTTTTACCATATGCAGCAGTGTTGGGCTGATTAATGTCCTTGTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACTGTGTTGGTTGCAGACTTGCCTCCTTCAGTTGACGAATACATTTGAATCCTCGCTGGTGCAAGCTGTCATGTGCTTGNTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGAT ] [-] EMBL CB626692 [ ATATTGAGCAACCCTCAAATAACTATATTCAGTGACCCGTCTGACCGAAGGGTAGCTGCACTGGCAACAAAACTAGTCGGTGGAAAAAAGATCACAAGGCTTTGTACGAATGATTCAGTTACTTCTAGAGGTGCATTCATAACACAAAAGATACACATATGCCCATCAAAGGACCAAAAGGCACCGAAGGTGAAGGAAATTCTTGAACAAATTCTAAATGATCATGCTAGAAAGACTGCAAAGGTCCTACTGGTAACCGCAAGTGATCATGAAGCACAGCATCTGTCATCGTCCTTGAAATTGCAAAATTGTACCGTGACCAATGACTCGCATGGCAACTCTTTTACCATATGCAGCAGTGTTGGGCTGATTAATGTCCTTGTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACTGTGTTGGTTGCAGACTTGCCTCCTTCAGTTGACGAATACATTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTG TGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCAAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGATCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTCACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCT ] consensusID : consensus_9155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 487 fasta sequence [CAGCCAGTGTTGGGCTGATTAAGTGTCCTTGTGAAAGACTGGGAGAACATAACAACGGC-AAATTTTGAGGACTTCGACACCTGTGTTGGTTGCAGACTTGCCTCCT-TCAGTTGACGAATACA-TTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGC-AAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGAGCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTGACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCTGTGAGAACCCAAAAAAAAAA] [+] EMBL BQ908174 [CAGCCAGTGTTGGGCTGATTAAGTGTCCTTGTGAAAGACTGGGAGAACATAACAACGGC AAATTTTGAGGACTTCGACACCTGTGTTGGTTGCAGACTTGCCTCCT TCAGTTGACGAATACA TTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGC AAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGAGCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTGACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCTGTGAGAACCCAAAAAAAAAA] [+] EMBL BI812591 [ gagAAGACTGGGAGACAATAACAACGGCAAAATTTTGAGGACTTCGACA CTGTGTTGGTTGCAGACTTGCCTCCTGTCAGTTGACGAATACAGTTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCGAAAACCCTT TCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGAGCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTGACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCTGTGAGAA AAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9155#0 CGGGGTCGCGGCGGCTAACCGTCTCTCTCGCCGCCGTCTCGCACCTCGCGTCGCCGCCGC 60 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 CGCCGCGAGTGTCGGAGCGGAGGAGAAGGGGAGGGGGGCCATGGCGAAGGGCGACGACGC 120 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 GCTGGCGCGGAAGCGCAACAAGGTGCGGCGGAAGCGGATGCGCAGCAGCGAGAACGCCGT 180 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 GTCGGCCCGCGTCGCCGGCATCATCGCCTCCAAGCGCCGCCGCAAGTCCGGCAAGCGGCG 240 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 GGCCTGCGAGGGCATGTGCTTCTCCCTCCCCACCCCGGAGGACCCCTTCAACGACCGCCA 300 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 CGGCAAGAAGCGGAAGGGCGACGACGAGCCGACCGGAGACGCCCCCGCCGCCGCCGCCGC 360 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 AGGCAGGGACGAATCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATTCGAGCGCCAA 420 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 GAAGCAGCCGGCGAGGGAGGCCGCCGCCGCCGCCGCCGCGAACGCCAAGTCTAGGGAGAA 480 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 GGACGGGGCGGAGTACGACCGGCCGTCCAAGTTCCTGGTGGTCTGCCTCAACGCCATCCG 540 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 AGACGCGGCGGCGTCCGAGGACGGCGGCGGCGGCGGCATCCACGACACCGGGTCGTGGGG 600 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 CGTGGAGCTCTGGAATTGCTGCTCGGCTGCGCCGCCTACGCACGTGCTCGACACCAGCGG 660 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 CGAGTGCGCCACCCGGGAGAAGACGGCTTGGCTCGTCTCCACAGCCTGCGACATCGTCGC 720 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 CAGGAAGGAGAAGCTCGCTGTGGTCGTCTCTTGCCCCTTCCTACTCTACCTCGTCCCCTC 780 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 CCAGGAAAAGGCCGTGCAAGTGCGTTCGATTTGCAAGCCTCTGAAATCACTTGGTATCCA 840 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 TTCCGTCAGTCTGCATCCCGGCGCTTCCATTGAACACCAGATTTCTGGATTAAAGAGTTG 900 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 CGAACCGGAGTTCCTTATATCCACGCCAGAGAGGCTGCTTGAACTAATAGCTTTAAAGGC 960 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 GATTGACATATCAGGCGTATCGATGCTGGTGATTGATGGTCTGAAGTGTTTCACGGACCT 1020 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 TAATGTCAGCGACAAGCTTTGTTCTATTAGGGATGCCATATTGAGCAACCCTCAAATAAC 1080 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 TATATTCAGTGACCCGTCTGACCGAAGGGTAGCTGCACTGGCAACAAAACTAGTCGGTGG 1140 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 AAAAAAGATCACAAGGCTTTGTACGAATGATTCAGTTACTTCTAGAGGTGCATTCATAAC 1200 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 ACAAAAGATACACATATGCCCATCAAAGGACCAAAAGGCACCGAAGGTGAAGGAAATTCT 1260 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 TGAACAAATTCTAAATGATCATGCTAGAAAGACTGCAAAGGTCCTACTGGTAACCGCAAG 1320 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 TGATCATGAAGCACAGCATCTGTCATCGTCCTTGAAATTGCAAAATTGTACCGTGACCAA 1380 consensus_9155#1 ------------------------------------------------------------ consensus_9155#0 TGACTCGCATGGCAACTCTTTTACCATATGCAGC-AGTGTTGGGCTGATTAA-TGTCCTT 1438 consensus_9155#1 ------------------------------CAGCCAGTGTTGGGCTGATTAAGTGTCCTT 30 **** ***************** ******* consensus_9155#0 GTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACAC-TGTGTTGGT 1497 consensus_9155#1 GTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACCTGTGTTGGT 90 ************************************************** ********* consensus_9155#0 TGCAGACTTGCCTCCTTCAGTTGACGAATACATTGAAATCCTCGCTGGTGCAAGCTGTCA 1557 consensus_9155#1 TGCAGACTTGCCTCCTTCAGTTGACGAATACATTGAAATCCTCGCTGGTGCAAGCTGTCA 150 ************************************************************ consensus_9155#0 TGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCAAAACC 1617 consensus_9155#1 TGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCAAAACC 210 ************************************************************ consensus_9155#0 CTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGC 1677 consensus_9155#1 CTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGC 270 ************************************************************ consensus_9155#0 ATCCTCATAGCAGGATCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATT 1737 consensus_9155#1 ATCCTCATAGCAGGAGCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATT 330 *************** ******************************************** consensus_9155#0 CATGGTTCTTCCAGTCACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCT 1797 consensus_9155#1 CATGGTTCTTCCAGTGACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCT 390 *************** ******************************************** consensus_9155#0 CACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATG 1857 consensus_9155#1 CACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATG 450 ************************************************************ consensus_9155#0 CGATCAAGTCCTAGTCTGTGAGAACCAATTGCTTTTGCATTCATTAAC 1905 consensus_9155#1 CGATCAAGTCCTAGTCTGTGAGAACCCAAAAAAAAAA----------- 487 ************************** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||