These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1660 fasta sequence [CCTTATCCCCGAAATTTTTGGATCATCCACTCAGCCGGCGAACGCCTCACCCTGCCGTCAAGATGGCCAGACCAGCTGGGATGCGGTGAAGAAGGAGCGGCTAGTGCAGTCAGCACAGCTAGGGGTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCGCCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGGCAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACCCCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCAGCGCCGGT-GGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTCCTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCCCTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGGGCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCTGCGACACTTCTCATGTTGGTCCCTAGCTCTGCTCTCCTTTATCTCCTCTCTTTCAATTGAAGGGGTGGGTACCAGCAACCTTCTTCTTGCCAGTAAAACAAATAGATTTTTCCTCTTCGATTGTGCGGTCTTAATTTGCAACAGTATTTTTTTATTTTATTTTTTTTTGCATTTGCTCATTGATTTTGTTGTAGATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCCCGGCCGCAAGGTTAATTTTTCTCTAGACGCATCTTGATTGGTATATGTATTCGTGTTAATCCTGAGTAACATGACCACAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAACAACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATATGTTCTTTAGGTTATTTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAATACATGTATGAAATTTTAGGTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTGAAATTTGATATCCACTGACACCCTGCTGAAATCAAACATGGCACTATTATTATAGCAGCAACCGCTGACTGCTCACTCAAACACATCAAATCCTCAAACCTCAGCTGCGATGCTAGCTCATGGAGCTTGAGACCGTGTGTTCTGCATGCAGAGTACTCGAGCATATTGTAATTTTGGTGCAGTACTACAGTGGCATGGAAACAATGTGCCGGCGTCCCTTAGTCATGGCTCTGCCCAGCCAACCCGACGAAGTGGTCATATGCTTAGTGTGTAAAAATTTTATTGTTCGCAGTGTTTGTGTAGTTTAGCTTGTAATTCAATGTGATAATCGTCAGTAAAAACTTTATCTATCGATGTATTATTGCGGTGAAAGTTTGACCTCAATCTTTTCACCCCAATAAAATAGAGTAAATAAATTACTCAAAAAAAAAAAAAAAAAAAAAAAAATTCGAGACTAGTT] [+] EMBL AK071424 [CCTTATCCCCGAAATTTTTGGATCATCCACTCAGCCGGCGAACGCCTCACCCTGCCGTCAAGATGGCCAGACCAGCTGGGATGCGGTGAAGAAGGAGCGGCTAGTGCAGTCAGCACAGCTAGGGGTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCGCCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGGCAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACCCCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCAGCGCCGGT GGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTCCTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCCCTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGGGCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCTGCGACACTTCTCATGTTGGTCCCTAGCTCTGCTCTCCTTTATCTCCTCTCTTTCAATTGAAGGGGTGGGTACCAGCAACCTTCTTCTTGCCAGTAAAACAAATAGATTTTTCCTCTTCGATTGTGCGGTCTTAATTTGCAACAGTATTTTTTTATTTTATTTTTTTTTGCATTTGCTCATTGATTTTGTTGTAGATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCCCGGCCGCAAGGTTAATTTTTCTCTAGACGCATCTTGATTGGTATATGTATTCGTGTTAATCCTGAGTAACATGACCACAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAACAACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATATGTTCTTTAGGTTATTTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAATACATGTATGAAATTTTAGGTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTGAAATTTGATATCCACTGACACCCTGCTGAAATCAAACATGGCACTATTATTATAGCAGCAACCGCTGACTGCTCACTCAAACACATCAAATCCTCAAACCTCAGCTGCGATGCTAGCTCATGGAGCTTGAGACCGTGTGTTCTGCATGCAGAGTACTCGAGCATATTGTAATTTTGGTGCAGTACTACAGTGGCATGGAAACAATGTGCCGGCGTCCCTTAGTCATGGCTCTGCCCAGCCAACCCGACGAAGTGGTCATATGCTTAGTGTGTAAAAATTTTATTGTTCGCAGTGTTTGTGTAGTTTAG ] [+] EMBL OSS14777A [ TGCAGTCAGCACAGCTAGGGGTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCGCCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGGCANNCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGGCTGNCGNAGCGTCGTCCACCNCTCCCGCCATC GCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCAGCGNCGTTNGGCACCAGGAGAGCCGC ] [+] EMBL C91643 [ AAAGACAGCCGAGGACTTCCTGAAGCTGAGCCCCGGCCGCAAGGTTAATTTTTCTCTAGACGCATCTTGATTGGTATATGTATTCGTGTTAATCCTGAGTAACATGACCACAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAACAACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATATGTTCTTTAGGTTA TNTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAAT ] [-] EMBL CF324745 [ TTGCTGTGCCAAAGGAATAAGATGAAGTTTCTGAAATTTGATATCCACTGACACCCTGCTGAAATCAAACATGGCACTATTATTATAGCAGCAACCGCTGACTGCTCACTCAAACACATCAAATCCTCAAACCTCAGCTGCGATGCTAGCTCATGGAGCTTGAGACCGTGTGTTCTGCATGCAGAGTACTCGAGCATATTGTAATTTTGGTGCAGTACTACAGTGGCATGGAAACAATGTGCCGGCGTCCCTTAGTCATGGCTCTGCCCAGCCAACCCGACGAAGTGGTCATATGCTTAGTGTGTAAAAATTTTATTGTTCGCAGTGTTTGTGTAGTTTAGCTTGTAATTCAATGTGATAATCGTCAGTAAAAACTTTATCTATCGATGTATTATTGCGGTGAAAGTTTGACCTCAATCTTTTCACCCCAATAAAATAGAGTAAATAAATTACTCAAAAAAAAAAAAAAAAAAAAAAAAATTCGAGACTAGTT] consensusID : consensus_9158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 961 fasta sequence [GTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCGCCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGGCAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACCCCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCAGCGCCGGTGGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTCCTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCCCTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGGGCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCTGCGACACTTCTCATATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCCCGGCCGCAAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAACAACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATATGTTCTTTAGGTTATTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAATGCATGTATGAAATTTTAGTTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTGAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCCTTCCA] [+] EMBL AK066829 [GTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCGCCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGGCAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACCCCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCAGCGCCGGTGGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTCCTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCCCTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGGGCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCTGCGACACTTCTCATATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCCCGGCCGCAAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAACAACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATATGTTCTTTAGGTTATTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAATGCATGTATGAAATTTTAGTTTTT ] [+] EMBL CF299392 [ CTATTAGTATATGTTCTTTAGGTTATTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAATACATGTATGAAATTTTAGGTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTGAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCCTTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9158#0 CCTTATCCCCGAAATTTTTGGATCATCCACTCAGCCGGCGAACGCCTCACCCTGCCGTCA 60 consensus_9158#1 ------------------------------------------------------------ consensus_9158#0 AGATGGCCAGACCAGCTGGGATGCGGTGAAGAAGGAGCGGCTAGTGCAGTCAGCACAGCT 120 consensus_9158#1 ------------------------------------------------------------ consensus_9158#0 AGGGGTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCG 180 consensus_9158#1 ----GTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCG 56 ******************************************************** consensus_9158#0 CCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGG 240 consensus_9158#1 CCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGG 116 ************************************************************ consensus_9158#0 CAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACC 300 consensus_9158#1 CAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACC 176 ************************************************************ consensus_9158#0 CCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCA 360 consensus_9158#1 CCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCA 236 ************************************************************ consensus_9158#0 GCGCCGGTGGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTC 420 consensus_9158#1 GCGCCGGTGGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTC 296 ************************************************************ consensus_9158#0 CTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCC 480 consensus_9158#1 CTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCC 356 ************************************************************ consensus_9158#0 CTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGG 540 consensus_9158#1 CTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGG 416 ************************************************************ consensus_9158#0 GCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCT 600 consensus_9158#1 GCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCT 476 ************************************************************ consensus_9158#0 GCGACACTTCTCATGTTGGTCCCTAGCTCTGCTCTCCTTTATCTCCTCTCTTTCAATTGA 660 consensus_9158#1 GCGACACTTCTCAT---------------------------------------------- 490 ************** consensus_9158#0 AGGGGTGGGTACCAGCAACCTTCTTCTTGCCAGTAAAACAAATAGATTTTTCCTCTTCGA 720 consensus_9158#1 ------------------------------------------------------------ consensus_9158#0 TTGTGCGGTCTTAATTTGCAACAGTATTTTTTTATTTTATTTTTTTTTGCATTTGCTCAT 780 consensus_9158#1 ------------------------------------------------------------ consensus_9158#0 TGATTTTGTTGTAGATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCC 840 consensus_9158#1 --------------ATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCC 536 ********************************************** consensus_9158#0 CGGCCGCAAGGTTAATTTTTCTCTAGACGCATCTTGATTGGTATATGTATTCGTGTTAAT 900 consensus_9158#1 CGGCCGCAAG-------------------------------------------------- 546 ********** consensus_9158#0 CCTGAGTAACATGACCACAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCAC 960 consensus_9158#1 --------------------AAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCAC 586 **************************************** consensus_9158#0 TATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAAC 1020 consensus_9158#1 TATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAAC 646 ************************************************************ consensus_9158#0 AACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATA 1080 consensus_9158#1 AACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATA 706 ************************************************************ consensus_9158#0 TGTTCTTTAGGTTATTTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGAC 1140 consensus_9158#1 TGTTCTTTAGGTTATTTTTTTTT-GTACTAGTCTTGTATCTGACATTCTGAATTGCTGAC 765 *********************** ************************************ consensus_9158#0 AAATACATGTATGAAATTTTAGGTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTG 1200 consensus_9158#1 AAATGCATGTATGAAATTTTAGTTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTG 825 **** ***************** ************************************* consensus_9158#0 AAATTTGATATCCACTGACACCCTGCTGAAATCAAACATGGCACTATTATTATAGCAGCA 1260 consensus_9158#1 AAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 885 *** * * * * * *** *** * * * * * * * * consensus_9158#0 ACCGCTGACTGCTCACTCAAACACATCAAATCCTCAAACCTCAGCTGCGATGCTAGCTCA 1320 consensus_9158#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCC 945 * * * *** * * *** *** * * * * * consensus_9158#0 TGGAGCTTGAGACCGTGTGTTCTGCATGCAGAGTACTCGAGCATATTGTAATTTTGGTGC 1380 consensus_9158#1 TT---TTTTCCCCCTTCCA----------------------------------------- 961 * ** ** * consensus_9158#0 AGTACTACAGTGGCATGGAAACAATGTGCCGGCGTCCCTTAGTCATGGCTCTGCCCAGCC 1440 consensus_9158#1 ------------------------------------------------------------ consensus_9158#0 AACCCGACGAAGTGGTCATATGCTTAGTGTGTAAAAATTTTATTGTTCGCAGTGTTTGTG 1500 consensus_9158#1 ------------------------------------------------------------ consensus_9158#0 TAGTTTAGCTTGTAATTCAATGTGATAATCGTCAGTAAAAACTTTATCTATCGATGTATT 1560 consensus_9158#1 ------------------------------------------------------------ consensus_9158#0 ATTGCGGTGAAAGTTTGACCTCAATCTTTTCACCCCAATAAAATAGAGTAAATAAATTAC 1620 consensus_9158#1 ------------------------------------------------------------ consensus_9158#0 TCAAAAAAAAAAAAAAAAAAAAAAAAATTCGAGACTAGTT 1660 consensus_9158#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||