These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1011 fasta sequence [TGGATTCCTCCTCCACCTCCGGGAGGAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGTGCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTTTGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGAGCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTCCGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCCGTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGTGCCCCTGGACATGGAGATGAAGTGGTTTCGGGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGGGTGCACGGGCTTGATGAATCAATGTGCTGTTGGCTGAGCGGAAAAATTGAGGGCCATGATGACAACCTACCTGTTGTGGAGTGGGGTGAGCATTGCAAAACATTGGTAGCTTGACTGGCGGCGCCATTCTGCAAATATGTGTCCCAATCACCTGATGCAGTGGATTTGAAACCAAACTCTAGGTTTATGATAGGACCTAACTGTGGGTGTGTGTCGAATTGCTATTAGTTTCTGTGCACGTGGCACGGTTATTTTGTGTGTGTACCAGTCGTATCGTGTATGCCAGACTTATCGTTCCTGTCTTGTGCGTCAGCGTCTTGATATTGCATGTCCATATTTCACGATACTGTTCTTTGTTCTGTTTGACTATATTTACTCATACGCGCTAAATAAGATATACGTCTGTTTATTCCGGCTCACCTCACTATACTAAGACTACGTCCTCTTGTGTTACGGTACATTTCTTGTATTTACGTGTGTCTTACGTCAGACGCTTC] [+] EMBL BE040707 [TGGATTCCTCCTCCACCTCCGGGAGGAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGTGCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTTTGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGAGCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTCCGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCCGTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGTGCCCCTGGACATGGAGATGAAGTGGTTTCGGGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGGGTGCACGGGCTTGATGAATCAATGTGCTGTTGGCTGAGCGGAAAAATTGAGGGCCATGATGACAACCTACCTGTTGTGGAGTGGGGTGAGCATTGCAAAACATTGGTAGCTTGACTGGCGGCGCCATTCTGCAAATATGTGTCCCAATCACCTGATGCAGTGGATTTGAAACCAAACTCTAGGTTTATGATAGGACCTAACTGTGGGTGTGTGTCGAATTGCTATTAGTTTCTGTGCACGTGGCACGGTTATTTTGTGTGTGTACCAGTCGTATCGTGTATGCCAGACTTATCGTTCCTGTCTTGTGCGTCAGCGTCTTGATATTGCATGTCCATATTTCACGATACTGTTCTTTGTTCTGTTTGACTATATTTACTCATACGCGCTAAATAAGATATACGTCTGTTTATTCCGGCTCACCTCACTATACTAAGACTACGTCCTCTTGTGTTACGGTACATTTCTTGTATTTACGTGTGTCTTACGTCAGACGCTTC] consensusID : consensus_916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence [CCTTTTCTCCGTTCATCTCGAGCAGAGGAGAGGAATGGATTCCTCCTCCACCTCCGGGAGGAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGTGCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTTTGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGAGCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTCCGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCCGTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGTGCACCTCGACATGGAGATGAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGGTTGCACAGGCATGATGAATCAATCTCTTTTCCTGGTCGGAGAAATTGGGGGCAATGATTACAACCTACCTCTTCTCAGCGGGGTGTCCATTACAAAGATTCGCAGCTTCACTCCGAGTGTCATTGCCAAAATTTCTTCTACAATCACCGAATTGATTGGGCTTGGAGCCAAGACGCTGGTTGTTCCTGGTAACCTCCCCATTGGATGTGTTCCAAATTACCTCATGATA] [+] EMBL CB659053 [CCTTTTCTCCGTTCATCTCGAGCAGAGGAGAGGAATGGATTCCTCCTCCACCTCCGGGAGGAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGTGCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTTTGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGAGCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTCCGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCCGTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGTGCACCTCGACATGGAGATGAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGGTTGCACAGGCATGATGAATCAATCTCTTTTCCTGGTCGGAGAAATTGGGGGCAATGATTACAACCTACCTCTTCTCAGCGGGGTGTCCATTACAAAGATTCGCAGCTTCACTCCGAGTGTCATTGCCAAAATTTCTTCTACAATCACCGAATTGATTGGGCTTGGAGCCAAGACGCTGGTTGTTCCTGGTAACCTCCCCATTGGATGTGTTCCAAATTACCTCATGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_916#0 -----------------------------------TGGATTCCTCCTCCACCTCCGGGAG 25 consensus_916#1 CCTTTTCTCCGTTCATCTCGAGCAGAGGAGAGGAATGGATTCCTCCTCCACCTCCGGGAG 60 ************************* consensus_916#0 GAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGT 85 consensus_916#1 GAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGT 120 ************************************************************ consensus_916#0 GCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTT 145 consensus_916#1 GCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTT 180 ************************************************************ consensus_916#0 TGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGA 205 consensus_916#1 TGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGA 240 ************************************************************ consensus_916#0 GCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTC 265 consensus_916#1 GCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTC 300 ************************************************************ consensus_916#0 CGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCC 325 consensus_916#1 CGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCC 360 ************************************************************ consensus_916#0 GTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGG 385 consensus_916#1 GTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGG 420 ************************************************************ consensus_916#0 CGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGT 445 consensus_916#1 CGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGT 480 ************************************************************ consensus_916#0 GCCCCTGGACATGGAGATGAAGTGGTTTCGGGATCTGCTGAAACTGCTCTGCCCCGGCGA 505 consensus_916#1 GCACCTCGACATGGAGATGAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGA 540 ** *** *********************** ***************************** consensus_916#0 CCTGGCCGGGTGCACGGGCTTGATGAATCAATGTGCTGTTGGCTGAGCGGAAAAATTGAG 565 consensus_916#1 CCTGGCCGGTTGCACAGGCATGATGAATCAATCTCTTTTC--CTGGTCGGAGAAATTGGG 598 ********* ***** *** ************ * * * *** **** ****** * consensus_916#0 GGCCATGATGACAACCTACCTGTTGTGGAGTGGGGTGAGCATTGCAAAACATTGGTAGCT 625 consensus_916#1 GGCAATGATTACAACCTACCTCTTCTC-AGCGGGGTGTCCATTACAAAG-ATTCGCAGCT 656 *** ***** *********** ** * ** ****** **** **** *** * **** consensus_916#0 TGACTGGCGGCGCCATTCTGCAAATATGTGTCCCAATCACCTGATGCAGTGGATTTGAAA 685 consensus_916#1 TCACTCCGAGTGTCATTGCCAAAATTTCTTCTACAATCACCGAATTGATTGGGCTTGGAG 716 * *** * * **** **** * * ******** ** * *** *** * consensus_916#0 CCAAACTCTAGGTTTATGATAG-GACCTAACTGT-GGGTGTGTGTCGAATTGCTATTAGT 743 consensus_916#1 CCAAGACGCTGGTTGTTCCTGGTAACCTCCCCATTGGATGTGTTCCAAATTACCTCATGA 776 **** **** * * * **** * * ** ***** * **** * * consensus_916#0 TTCTGTGCACGTGGCACGGTTATTTTGTGTGTGTACCAGTCGTATCGTGTATGCCAGACT 803 consensus_916#1 TA---------------------------------------------------------- 778 * consensus_916#0 TATCGTTCCTGTCTTGTGCGTCAGCGTCTTGATATTGCATGTCCATATTTCACGATACTG 863 consensus_916#1 ------------------------------------------------------------ consensus_916#0 TTCTTTGTTCTGTTTGACTATATTTACTCATACGCGCTAAATAAGATATACGTCTGTTTA 923 consensus_916#1 ------------------------------------------------------------ consensus_916#0 TTCCGGCTCACCTCACTATACTAAGACTACGTCCTCTTGTGTTACGGTACATTTCTTGTA 983 consensus_916#1 ------------------------------------------------------------ consensus_916#0 TTTACGTGTGTCTTACGTCAGACGCTTC 1011 consensus_916#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||