cluster # 9164

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Oryza sativa
cluster # 9164 cluster # 9164 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9164#0 length = 826 sequences # 5

consensus_9164#1 length = 199 sequences # 1

consensusID : consensus_9164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 826
fasta sequence

                              [CCGCTATTACTACCAGCAGATTGACGACACCGATCGACCGATCGATCGTACTACGTGCAGAGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACCGACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGTGAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGCGCTTCCGCCATTATTGCCCGGCCTCGCCTCCCACGGCCAGCCCCGTGTCGCGTCCTTCTGCAAGAGGCTGGCGAGGAACGTGGTGGCCATGGCGGCGGGGGAGGCGCCGGCGGCGCCGCTCGCCGCCAACGCGGAGATCACCGAGTTCATCAACGCCCTCAAACAAGAGTGGGACAGGATTGAGGACAAGTACGCGGTGACGACGCTGGCGGTCGCTGCGTCGCTCGGGATGTGGAGCGCCGGCGGAGTTGTATCGGCAATTGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTGGTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAGGGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAGAATGTTTACTCAGAGTTGAAAAAAAAAAAAACTCGAGACTAGT]

[+] EMBL CF325108             [CCGCTATTACTACCAGCAGATTGACGACACCGATCGACCGATCGATCGTACTACGTGCAGAGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACCGACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGTGAAGCCGGCGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF324976             [              AGCAGATTGACGACACCGATCGACCGATCGATCGTACTACGTGCAGAGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACCGACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGTGAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGTGCTTCCGCCATTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK066849             [                                           GATCGTACTACGTGCAGAGAGCTTAGCTAGCTGCGGCGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACCGACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGTGAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGCGCTTCCGCCATTATTGCCCGGCCTCGCCTCCCACGGCCAGCCCCGTGTCGCGTCCTTCTGCAAGAGGCTGGCGAGGAACGTGGTGGCCATGGCGGCGGGGGAGGCGCCGGCGGCGCCGCTCGCCGCCAACGCGGAGATCACCGAGTTCATCAACGCCCTCAAACAAGAGTGGGACAGGATTGAGGACAAGTACGCGGTGACGACGCTGGCGGTCGCTGCGTCGCTCGGGATGTGGAGCGCCGGCGGAGTTGTATCGGCAATTGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTGGTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAGGGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAGAATGTTTACTCAGAGTTGAA                       ]
[+] EMBL AK103995             [                                               GTACTACGTGCAGAGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACCGACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGTGAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGCGCTTCCGCCATTATTGCCCGGCCTCGCCTCCCGCGGCCAGCCCCGTGTCGCGTCCTTCTGCAAGAGGCTGGCGAGGAACGTGGTGGCCATGGCGGCGGGGGAGGCGCCGGCGGCGCCGCTCGCCGCCAACGCGGAGATCACCGAGTTCATCAACGCCCTCAAACAAGAGTGGGACAGGATTGAGGACAAGTACGCGGTGACGACGCTGGCGGTCGCTGCGTCGCTCGGGATGTGGAGCGCCGGCGGAGTTGTATCGGCAATTGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTGGTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAGGGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAGAAT                                        ]
[-] EMBL CF197308             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAGCGCCGGCGGAGTTGTATCGGCAATTGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTGGTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAGGGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAGAATGTTTACTCAGAAAAAAAAAAAAAAAAAACTCGAGACTAGT]




>consensus_9164#0
CCGCTATTACTACCAGCAGATTGACGACACCGATCGACCGATCGATCGTACTACGTGCAG
AGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACC
GACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGT
GAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGCGCTTCCGCCATTATTGCCCGG
CCTCGCCTCCCACGGCCAGCCCCGTGTCGCGTCCTTCTGCAAGAGGCTGGCGAGGAACGT
GGTGGCCATGGCGGCGGGGGAGGCGCCGGCGGCGCCGCTCGCCGCCAACGCGGAGATCAC
CGAGTTCATCAACGCCCTCAAACAAGAGTGGGACAGGATTGAGGACAAGTACGCGGTGAC
GACGCTGGCGGTCGCTGCGTCGCTCGGGATGTGGAGCGCCGGCGGAGTTGTATCGGCAAT
TGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTG
GTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAG
GGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGT
TCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTT
AATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTT
CAGAATGTTTACTCAGAGTTGAAAAAAAAAAAAACTCGAGACTAGT

consensusID : consensus_9164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [GAGGACGAGACAAGGGGGAGGATATAATCACCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAAAAAAAAAAA]

[-] EMBL CA761603             [GAGGACGAGACAAGGGGGAGGATATAATCACCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAAAAAAAAAAA]




>consensus_9164#1
GAGGACGAGACAAGGGGGAGGATATAATCACCGGTTAACAGAGATACTACTTATATACAA
CTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCAT
CTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAA
CATTTTTCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9164#0      CCGCTATTACTACCAGCAGATTGACGACACCGATCGACCGATCGATCGTACTACGTGCAG 60
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      AGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACC 120
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      GACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGT 180
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      GAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGCGCTTCCGCCATTATTGCCCGG 240
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      CCTCGCCTCCCACGGCCAGCCCCGTGTCGCGTCCTTCTGCAAGAGGCTGGCGAGGAACGT 300
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      GGTGGCCATGGCGGCGGGGGAGGCGCCGGCGGCGCCGCTCGCCGCCAACGCGGAGATCAC 360
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      CGAGTTCATCAACGCCCTCAAACAAGAGTGGGACAGGATTGAGGACAAGTACGCGGTGAC 420
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      GACGCTGGCGGTCGCTGCGTCGCTCGGGATGTGGAGCGCCGGCGGAGTTGTATCGGCAAT 480
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      TGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTG 540
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      GTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAG 600
consensus_9164#1      ---------------------------------------------------GAGGACGAG 9
                                                                          * *   **

consensus_9164#0      GGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGT 660
consensus_9164#1      ACAAGG--GGGAGGATATAATCACCGGTTAACAGAGATACTACTTATATACAACTTCAGT 67
                        * *     ************* ************************************

consensus_9164#0      TCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTT 720
consensus_9164#1      TCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTT 127
                      ************************************************************

consensus_9164#0      AATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTT 780
consensus_9164#1      AATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTT 187
                      ************************************************************

consensus_9164#0      CAGAATGTTTACTCAGAGTTGAAAAAAAAAAAAACTCGAGACTAGT 826
consensus_9164#1      CAAAAAAAAAAA---------------------------------- 199
                      ** **     *