These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2271 fasta sequence [TTCTAGTCTTCTTCGTGGGTAGGCTCGTGCTGCCTCTGCCTGCTGGTGCAGCAGATCAGATCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGCGGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAGAAATGGTGGGAGGGAGTTGACCTTCAGAAGCTCATATTGGCTCATAACAACCTTGAGGTGTTGCGTGAAGACCTCAGAAATTTGTCTTCGCTCGTTGTATTAAACATTAGTCACAACAATATTTCTTCCCTCCCCGCAGCTATTGGAGACCTTCCTTTGCTAAAATCGTTGGATGTATCTTCTAATCAAATAAACGCTTTTCCCGAAGAGATTGGTTTTGCGACCGCTTTAGTCAAGGTTGACTGCTCAAATAATTGCCTTACAGATCTCCCAGTTAGTCTTGCCAGATGCCTGGAGTTGTCAGAACTCAATGCGTCAAACAACACTATATCCGTACTGCCAGATGAACTTGCTGGCTGTTCCAAGTTATTCAGATTGAATCTAGAGGGTAACAAGCTCGTGACGCTATCAGACAAGATGTTTATGTCATGGACAATGCTTACAGAGATGAATGCTGCAAAGAATCTACTGACAGCCATCCCGGATGGTATTGGTGCACTGTCAAAGCTAATTCGTCTGGACCTGCATCAGAACAAAATAACCCTGATTCCTCCTTCCATAAAAGATTGCTCTTCTCTAGCAGAGTTTTATATGGGAAATAACTTGTTGACATCCATACCAGAGGATATTGGCATGCTATCGAACTTGGGAATACTTGATCTACACTCTAACCAGCTAAAGGAGTATCCTGTCGGGGCTTGTAGACTCAAGCTCTCTTTCCTTGATCTATCAAACAACTCATTATCTGGTCTGCCTGCTGAACTAGGTACTATGACAACCCTAAGAAAGCTTCTGCTTACTGGTAATCCTATGAGGACACTTCGGAGTTTCTTGGTTTCTGGACCAACAACAGCATTATTAAAGTATCTGCGCAGTCGGCTTTCATCTGATGAAGGAGCATCAGGATCTGGAAGCACTCCAACAAAAGATGATCAAATTGCTGCAGCAAGAAGATTGTCTTTATCTTCTAAGGAACTGGACTTGAGTGGTCTTGGTGTGACCAGTGTACCACCTGCAGCTTGGGAGACAAATGATGTGATGAAACTAGATCTTTCTAAGAATTCAATAGAAGATCTGCCAAACGAGTTGTCATTATGCTCGTCACTTCAATCTTTGATTTTGTCTAACAACAAAATTAAAAGGTGGCCTGGCACCGTATTCTCCTCCCTTGCCAGCCTTTCTTTGTTAAA-GCTAGACAACAATCCTTTGGCAGAGATATTGGCTACTGATCTTGAGGCCCTGTCTAAACTTGAAGTACTAGATTTAAGTGGCAGTGCTTCTTCTCTACCTGAACCCTCTGCGGTTTCG-AAATTACCTCACCTAAAGGAACTCTACCTAAGACG-AATGAAACTCCATGGATTTCCTGATAGTTTATTGGGCTTAAAACTGCTGCGAATTCTTGATCTGAGTCAGAATTATCTTACATCTGTGCCAGA-GGGTATCAAAGATTTAACTTCTTTGATTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAAT-CCCCTC-AGGAGCATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTTTGAAGTATCTCAAAGAAAAGCTACCTGCTGAATAAATTCTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCAGTTCGGCCCTCTCGAACTGCAGTTACCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTTTTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGATCGTTATCATTCTCCTCATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTTTCAGCTTGTGTATAACCAACCTTGTATGCAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTCCCGCACGTGTGAAAAAAAATCTGCCGCCACAAGTGAAACTTTGTTTCTTGCCAAAGAAGCCGTTCCTAAAGAATAAAAAAAAATATTATTGGAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073434 [TTCTAGTCTTCTTCGTGGGTAGGCTCGTGCTGCCTCTGCCTGCTGGTGCAGCAGATCAGATCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGCGGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAGAAATGGTGGGAGGGAGTTGACCTTCAGAAGCTCATATTGGCTCATAACAACCTTGAGGTGTTGCGTGAAGACCTCAGAAATTTGTCTTCGCTCGTTGTATTAAACATTAGTCACAACAATATTTCTTCCCTCCCCGCAGCTATTGGAGACCTTCCTTTGCTAAAATCGTTGGATGTATCTTCTAATCAAATAAACGCTTTTCCCGAAGAGATTGGTTTTGCGACCGCTTTAGTCAAGGTTGACTGCTCAAATAATTGCCTTACAGATCTCCCAGTTAGTCTTGCCAGATGCCTGGAGTTGTCAGAACTCAATGCGTCAAACAACACTATATCCGTACTGCCAGATGAACTTGCTGGCTGTTCCAAGTTATTCAGATTGAATCTAGAGGGTAACAAGCTCGTGACGCTATCAGACAAGATGTTTATGTCATGGACAATGCTTACAGAGATGAATGCTGCAAAGAATCTACTGACAGCCATCCCGGATGGTATTGGTGCACTGTCAAAGCTAATTCGTCTGGACCTGCATCAGAACAAAATAACCCTGATTCCTCCTTCCATAAAAGATTGCTCTTCTCTAGCAGAGTTTTATATGGGAAATAACTTGTTGACATCCATACCAGAGGATATTGGCATGCTATCGAACTTGGGAATACTTGATCTACACTCTAACCAGCTAAAGGAGTATCCTGTCGGGGCTTGTAGACTCAAGCTCTCTTTCCTTGATCTATCAAACAACTCATTATCTGGTCTGCCTGCTGAACTAGGTACTATGACAACCCTAAGAAAGCTTCTGCTTACTGGTAATCCTATGAGGACACTTCGGAGTTTCTTGGTTTCTGGACCAACAACAGCATTATTAAAGTATCTGCGCAGTCGGCTTTCATCTGATGAAGGAGCATCAGGATCTGGAAGCACTCCAACAAAAGATGATCAAATTGCTGCAGCAAGAAGATTGTCTTTATCTTCTAAGGAACTGGACTTGAGTGGTCTTGGTGTGACCAGTGTACCACCTGCAGCTTGGGAGACAAATGATGTGATGAAACTAGATCTTTCTAAGAATTCAATAGAAGATCTGCCAAACGAGTTGTCATTATGCTCGTCACTTCAATCTTTGATTTTGTCTAACAACAAAATTAAAAGGTGGCCTGGCACCGTATTCTCCTCCCTTGCCAGCCTTTCTTTGTTAAA GCTAGACAACAATCCTTTGGCAGAGATATTGGCTACTGATCTTGAGGCCCTGTCTAAACTTGAAGTACTAGATTTAAGTGGCAGTGCTTCTTCTCTACCTGAACCCTCTGCGGTTTCG AAATTACCTCACCTAAAGGAACTCTACCTAAGACG AATGAAACTCCATGGATTTCCTGATAGTTTATTGGGCTTAAAACTGCTGCGAATTCTTGATCTGAGTCAGAATTATCTTACATCTGTGCCAGA GGGTATCAAAGATTTAACTTCTTTGATTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAAT CCCCTC AGGAGCATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTCTGAAGTATCTCAAAGAAAAGCTACCTGCTGAATAAATTCTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCAGTTCGGCCCTCTCGAACTGCAGTTACCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTTTTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGATCGTTATCATTCTCCTCATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTCTCAGCTTGTGTATAACCAACCTTGTATGCAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTCCCGCACGTGTGAAAAAAAATCTGCCGCCACAAGTGAAACTTT ] [+] EMBL CF305137 [ CAACCTTGAGGCGTTGCGTGAAGACCTCAGAAATTCGTCTTCGCTCGGTGTATCAAACATTAGCCACAACAATATTTCTTCCCTCCCCGCAGCT ] [+] EMBL OSS10257A [ AAGGTGGCCTGGCACCGTATTCTCCTCCCTTGCCAGCCTTTCTTTGTTAAATGCTAGACAACAATCCTTTGGCAGAGATATTGGCTNCTGATCTTGAGGCCCTGTCTAANCTTGAAGTACTAGATTTAAGTGGCAGTGCTTCTTCTCTNCCTG ACCCTCTGAGGTTTCGAAAATTACCTCACCTAAAGGAACTCTACCTAAGANGAAATGAAACTCCATGGATTTCCTGATAGTTTATTGGGCTTAAAACTGCTGCGAATTCTTGATCTGAGTCAGAATTATCTTACATCTGNGNCAGAGGGGNATCAAAa ] [-] EMBL CF325142 [ GAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCCTC AGGAGCATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTTTGAAGTATCTCAAAGAAAAGCTACCTGCTGAATAAATTCTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCAGTTCGGCCCTCTCGAACTGCAGTTACCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTTTTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGATCGTTATCATTCTCCTCATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTTTCAGCTTGTGTATAACCAACCTTGTATGCAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTCCCGCACGTGTGAAAAAAAATCTGCCGCCACAAGTGAAACTTTGTTTCTTGCCAAAGAAGCCGTTCCTAAAGAATAAAAAAAAATATTATTGGAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF325166 [ AGCCTAACCTGCAAGTCTTGAAACTTGATGGAAAT CCCCTCTAGGAGCATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTTTGAAGTATCTCAAAGAAAAGCTACCTGCTGAATAAATTTTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCAGTTCGGCCCTCTCGAACTGCAGTTACCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTTTTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGATCGTTATCATTCTCCTCATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTTTCAGCTTGTGTATAACCAACCTTGTATGCAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTCCCGCACGTGTGAAAAAAAATCTGCCGCCACAAGTGAAACTTTGTTTCTTGCCAAAGAAGCCGTTCCTAAAGAATAAAAAAAAATATTATTGGAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [AGATCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGCGGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGGAGGCCCCCAAGGCGGCGCCCACCATCCCCGTATACCCCGGCCCCATGCTGCGTATATGCCTGCCCGGTCCACCACTCCCCTATCCTCAATTCCTCCCAACAATCCTCCCACCA] [+] EMBL CA757842 [AGATCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGCGGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGGAGGCCCCCAAGGCGGCGCCCACCATCCCCGTATACCCCGGCCCCATGCTGCGTATATGCCTGCCCGGTCCACCACTCCCCTATCCTCAATTCCTCCCAACAATCCTCCCACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9166#0 TTCTAGTCTTCTTCGTGGGTAGGCTCGTGCTGCCTCTGCCTGCTGGTGCAGCAGATCAGA 60 consensus_9166#1 ---------------------------------------------------------AGA 3 *** consensus_9166#0 TCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGC 120 consensus_9166#1 TCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGC 63 ************************************************************ consensus_9166#0 GGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGG 180 consensus_9166#1 GGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGG 123 ************************************************************ consensus_9166#0 AGGTACCCAAGGAGGTGTACAACAACTTGG-ACACGGGGGCTC-AGGATGAGAAATGGTG 238 consensus_9166#1 AGGCCCCCAAGGCGGCGCCCACCATCCCCGTATACCCCGGCCCCATGCTGCGTATATGCC 183 *** ******* ** * ** ** * * * ** *** * * * ** * * * consensus_9166#0 GGAGGGAGTTGACCTTCAGAAGCTCATATTGGCTCATAACAACCTTGAGGTGTTGCGTGA 298 consensus_9166#1 TGCCCGGTCCACCACTCCCCTATCCTCAATTCCTCCCAACAATCCTCCCACCA------- 236 * * * ** * * * *** ***** * * consensus_9166#0 AGACCTCAGAAATTTGTCTTCGCTCGTTGTATTAAACATTAGTCACAACAATATTTCTTC 358 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 CCTCCCCGCAGCTATTGGAGACCTTCCTTTGCTAAAATCGTTGGATGTATCTTCTAATCA 418 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 AATAAACGCTTTTCCCGAAGAGATTGGTTTTGCGACCGCTTTAGTCAAGGTTGACTGCTC 478 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 AAATAATTGCCTTACAGATCTCCCAGTTAGTCTTGCCAGATGCCTGGAGTTGTCAGAACT 538 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 CAATGCGTCAAACAACACTATATCCGTACTGCCAGATGAACTTGCTGGCTGTTCCAAGTT 598 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 ATTCAGATTGAATCTAGAGGGTAACAAGCTCGTGACGCTATCAGACAAGATGTTTATGTC 658 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 ATGGACAATGCTTACAGAGATGAATGCTGCAAAGAATCTACTGACAGCCATCCCGGATGG 718 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 TATTGGTGCACTGTCAAAGCTAATTCGTCTGGACCTGCATCAGAACAAAATAACCCTGAT 778 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 TCCTCCTTCCATAAAAGATTGCTCTTCTCTAGCAGAGTTTTATATGGGAAATAACTTGTT 838 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 GACATCCATACCAGAGGATATTGGCATGCTATCGAACTTGGGAATACTTGATCTACACTC 898 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 TAACCAGCTAAAGGAGTATCCTGTCGGGGCTTGTAGACTCAAGCTCTCTTTCCTTGATCT 958 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 ATCAAACAACTCATTATCTGGTCTGCCTGCTGAACTAGGTACTATGACAACCCTAAGAAA 1018 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 GCTTCTGCTTACTGGTAATCCTATGAGGACACTTCGGAGTTTCTTGGTTTCTGGACCAAC 1078 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 AACAGCATTATTAAAGTATCTGCGCAGTCGGCTTTCATCTGATGAAGGAGCATCAGGATC 1138 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 TGGAAGCACTCCAACAAAAGATGATCAAATTGCTGCAGCAAGAAGATTGTCTTTATCTTC 1198 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 TAAGGAACTGGACTTGAGTGGTCTTGGTGTGACCAGTGTACCACCTGCAGCTTGGGAGAC 1258 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 AAATGATGTGATGAAACTAGATCTTTCTAAGAATTCAATAGAAGATCTGCCAAACGAGTT 1318 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 GTCATTATGCTCGTCACTTCAATCTTTGATTTTGTCTAACAACAAAATTAAAAGGTGGCC 1378 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 TGGCACCGTATTCTCCTCCCTTGCCAGCCTTTCTTTGTTAAAGCTAGACAACAATCCTTT 1438 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 GGCAGAGATATTGGCTACTGATCTTGAGGCCCTGTCTAAACTTGAAGTACTAGATTTAAG 1498 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 TGGCAGTGCTTCTTCTCTACCTGAACCCTCTGCGGTTTCGAAATTACCTCACCTAAAGGA 1558 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 ACTCTACCTAAGACGAATGAAACTCCATGGATTTCCTGATAGTTTATTGGGCTTAAAACT 1618 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 GCTGCGAATTCTTGATCTGAGTCAGAATTATCTTACATCTGTGCCAGAGGGTATCAAAGA 1678 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 TTTAACTTCTTTGATTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGA 1738 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 GCTGGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCAGGAG 1798 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 CATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTTTGAAGTATCTCAAAGAAAA 1858 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 GCTACCTGCTGAATAAATTCTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCA 1918 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 GTTCGGCCCTCTCGAACTGCAGTTACCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTT 1978 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 TTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGATCGTTATCATTCTCCT 2038 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 CATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTTTCAGCTTGTGTATAACCAACCTT 2098 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 GTATGCAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTC 2158 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 CCGCACGTGTGAAAAAAAATCTGCCGCCACAAGTGAAACTTTGTTTCTTGCCAAAGAAGC 2218 consensus_9166#1 ------------------------------------------------------------ consensus_9166#0 CGTTCCTAAAGAATAAAAAAAAATATTATTGGAAAAAAAAAAAAAAAAAAAAA 2271 consensus_9166#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||