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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2271 fasta sequence
[TTCTAGTCTTCTTCGTGGGTAGGCTCGTGCTGCCTCTGCCTGCTGGTGCAGCAGATCAGATCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGCGGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAGAAATGGTGGGAGGGAGTTGACCTTCAGAAGCTCATATTGGCTCATAACAACCTTGAGGTGTTGCGTGAAGACCTCAGAAATTTGTCTTCGCTCGTTGTATTAAACATTAGTCACAACAATATTTCTTCCCTCCCCGCAGCTATTGGAGACCTTCCTTTGCTAAAATCGTTGGATGTATCTTCTAATCAAATAAACGCTTTTCCCGAAGAGATTGGTTTTGCGACCGCTTTAGTCAAGGTTGACTGCTCAAATAATTGCCTTACAGATCTCCCAGTTAGTCTTGCCAGATGCCTGGAGTTGTCAGAACTCAATGCGTCAAACAACACTATATCCGTACTGCCAGATGAACTTGCTGGCTGTTCCAAGTTATTCAGATTGAATCTAGAGGGTAACAAGCTCGTGACGCTATCAGACAAGATGTTTATGTCATGGACAATGCTTACAGAGATGAATGCTGCAAAGAATCTACTGACAGCCATCCCGGATGGTATTGGTGCACTGTCAAAGCTAATTCGTCTGGACCTGCATCAGAACAAAATAACCCTGATTCCTCCTTCCATAAAAGATTGCTCTTCTCTAGCAGAGTTTTATATGGGAAATAACTTGTTGACATCCATACCAGAGGATATTGGCATGCTATCGAACTTGGGAATACTTGATCTACACTCTAACCAGCTAAAGGAGTATCCTGTCGGGGCTTGTAGACTCAAGCTCTCTTTCCTTGATCTATCAAACAACTCATTATCTGGTCTGCCTGCTGAACTAGGTACTATGACAACCCTAAGAAAGCTTCTGCTTACTGGTAATCCTATGAGGACACTTCGGAGTTTCTTGGTTTCTGGACCAACAACAGCATTATTAAAGTATCTGCGCAGTCGGCTTTCATCTGATGAAGGAGCATCAGGATCTGGAAGCACTCCAACAAAAGATGATCAAATTGCTGCAGCAAGAAGATTGTCTTTATCTTCTAAGGAACTGGACTTGAGTGGTCTTGGTGTGACCAGTGTACCACCTGCAGCTTGGGAGACAAATGATGTGATGAAACTAGATCTTTCTAAGAATTCAATAGAAGATCTGCCAAACGAGTTGTCATTATGCTCGTCACTTCAATCTTTGATTTTGTCTAACAACAAAATTAAAAGGTGGCCTGGCACCGTATTCTCCTCCCTTGCCAGCCTTTCTTTGTTAAA-GCTAGACAACAATCCTTTGGCAGAGATATTGGCTACTGATCTTGAGGCCCTGTCTAAACTTGAAGTACTAGATTTAAGTGGCAGTGCTTCTTCTCTACCTGAACCCTCTGCGGTTTCG-AAATTACCTCACCTAAAGGAACTCTACCTAAGACG-AATGAAACTCCATGGATTTCCTGATAGTTTATTGGGCTTAAAACTGCTGCGAATTCTTGATCTGAGTCAGAATTATCTTACATCTGTGCCAGA-GGGTATCAAAGATTTAACTTCTTTGATTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAAT-CCCCTC-AGGAGCATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTTTGAAGTATCTCAAAGAAAAGCTACCTGCTGAATAAATTCTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCAGTTCGGCCCTCTCGAACTGCAGTTACCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTTTTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGATCGTTATCATTCTCCTCATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTTTCAGCTTGTGTATAACCAACCTTGTATGCAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTCCCGCACGTGTGAAAAAAAATCTGCCGCCACAAGTGAAACTTTGTTTCTTGCCAAAGAAGCCGTTCCTAAAGAATAAAAAAAAATATTATTGGAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK073434 [TTCTAGTCTTCTTCGTGGGTAGGCTCGTGCTGCCTCTGCCTGCTGGTGCAGCAGATCAGATCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGCGGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAGAAATGGTGGGAGGGAGTTGACCTTCAGAAGCTCATATTGGCTCATAACAACCTTGAGGTGTTGCGTGAAGACCTCAGAAATTTGTCTTCGCTCGTTGTATTAAACATTAGTCACAACAATATTTCTTCCCTCCCCGCAGCTATTGGAGACCTTCCTTTGCTAAAATCGTTGGATGTATCTTCTAATCAAATAAACGCTTTTCCCGAAGAGATTGGTTTTGCGACCGCTTTAGTCAAGGTTGACTGCTCAAATAATTGCCTTACAGATCTCCCAGTTAGTCTTGCCAGATGCCTGGAGTTGTCAGAACTCAATGCGTCAAACAACACTATATCCGTACTGCCAGATGAACTTGCTGGCTGTTCCAAGTTATTCAGATTGAATCTAGAGGGTAACAAGCTCGTGACGCTATCAGACAAGATGTTTATGTCATGGACAATGCTTACAGAGATGAATGCTGCAAAGAATCTACTGACAGCCATCCCGGATGGTATTGGTGCACTGTCAAAGCTAATTCGTCTGGACCTGCATCAGAACAAAATAACCCTGATTCCTCCTTCCATAAAAGATTGCTCTTCTCTAGCAGAGTTTTATATGGGAAATAACTTGTTGACATCCATACCAGAGGATATTGGCATGCTATCGAACTTGGGAATACTTGATCTACACTCTAACCAGCTAAAGGAGTATCCTGTCGGGGCTTGTAGACTCAAGCTCTCTTTCCTTGATCTATCAAACAACTCATTATCTGGTCTGCCTGCTGAACTAGGTACTATGACAACCCTAAGAAAGCTTCTGCTTACTGGTAATCCTATGAGGACACTTCGGAGTTTCTTGGTTTCTGGACCAACAACAGCATTATTAAAGTATCTGCGCAGTCGGCTTTCATCTGATGAAGGAGCATCAGGATCTGGAAGCACTCCAACAAAAGATGATCAAATTGCTGCAGCAAGAAGATTGTCTTTATCTTCTAAGGAACTGGACTTGAGTGGTCTTGGTGTGACCAGTGTACCACCTGCAGCTTGGGAGACAAATGATGTGATGAAACTAGATCTTTCTAAGAATTCAATAGAAGATCTGCCAAACGAGTTGTCATTATGCTCGTCACTTCAATCTTTGATTTTGTCTAACAACAAAATTAAAAGGTGGCCTGGCACCGTATTCTCCTCCCTTGCCAGCCTTTCTTTGTTAAA GCTAGACAACAATCCTTTGGCAGAGATATTGGCTACTGATCTTGAGGCCCTGTCTAAACTTGAAGTACTAGATTTAAGTGGCAGTGCTTCTTCTCTACCTGAACCCTCTGCGGTTTCG AAATTACCTCACCTAAAGGAACTCTACCTAAGACG AATGAAACTCCATGGATTTCCTGATAGTTTATTGGGCTTAAAACTGCTGCGAATTCTTGATCTGAGTCAGAATTATCTTACATCTGTGCCAGA GGGTATCAAAGATTTAACTTCTTTGATTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAAT CCCCTC AGGAGCATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTCTGAAGTATCTCAAAGAAAAGCTACCTGCTGAATAAATTCTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCAGTTCGGCCCTCTCGAACTGCAGTTACCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTTTTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGATCGTTATCATTCTCCTCATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTCTCAGCTTGTGTATAACCAACCTTGTATGCAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTCCCGCACGTGTGAAAAAAAATCTGCCGCCACAAGTGAAACTTT ]
[+] EMBL CF305137 [ CAACCTTGAGGCGTTGCGTGAAGACCTCAGAAATTCGTCTTCGCTCGGTGTATCAAACATTAGCCACAACAATATTTCTTCCCTCCCCGCAGCT ]
[+] EMBL OSS10257A [ AAGGTGGCCTGGCACCGTATTCTCCTCCCTTGCCAGCCTTTCTTTGTTAAATGCTAGACAACAATCCTTTGGCAGAGATATTGGCTNCTGATCTTGAGGCCCTGTCTAANCTTGAAGTACTAGATTTAAGTGGCAGTGCTTCTTCTCTNCCTG ACCCTCTGAGGTTTCGAAAATTACCTCACCTAAAGGAACTCTACCTAAGANGAAATGAAACTCCATGGATTTCCTGATAGTTTATTGGGCTTAAAACTGCTGCGAATTCTTGATCTGAGTCAGAATTATCTTACATCTGNGNCAGAGGGGNATCAAAa ]
[-] EMBL CF325142 [ GAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCCTC AGGAGCATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTTTGAAGTATCTCAAAGAAAAGCTACCTGCTGAATAAATTCTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCAGTTCGGCCCTCTCGAACTGCAGTTACCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTTTTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGATCGTTATCATTCTCCTCATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTTTCAGCTTGTGTATAACCAACCTTGTATGCAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTCCCGCACGTGTGAAAAAAAATCTGCCGCCACAAGTGAAACTTTGTTTCTTGCCAAAGAAGCCGTTCCTAAAGAATAAAAAAAAATATTATTGGAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF325166 [ AGCCTAACCTGCAAGTCTTGAAACTTGATGGAAAT CCCCTCTAGGAGCATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTTTGAAGTATCTCAAAGAAAAGCTACCTGCTGAATAAATTTTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCAGTTCGGCCCTCTCGAACTGCAGTTACCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTTTTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGATCGTTATCATTCTCCTCATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTTTCAGCTTGTGTATAACCAACCTTGTATGCAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTCCCGCACGTGTGAAAAAAAATCTGCCGCCACAAGTGAAACTTTGTTTCTTGCCAAAGAAGCCGTTCCTAAAGAATAAAAAAAAATATTATTGGAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[AGATCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGCGGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGGAGGCCCCCAAGGCGGCGCCCACCATCCCCGTATACCCCGGCCCCATGCTGCGTATATGCCTGCCCGGTCCACCACTCCCCTATCCTCAATTCCTCCCAACAATCCTCCCACCA]
[+] EMBL CA757842 [AGATCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGCGGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGGAGGCCCCCAAGGCGGCGCCCACCATCCCCGTATACCCCGGCCCCATGCTGCGTATATGCCTGCCCGGTCCACCACTCCCCTATCCTCAATTCCTCCCAACAATCCTCCCACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9166#0 TTCTAGTCTTCTTCGTGGGTAGGCTCGTGCTGCCTCTGCCTGCTGGTGCAGCAGATCAGA 60
consensus_9166#1 ---------------------------------------------------------AGA 3
***
consensus_9166#0 TCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGC 120
consensus_9166#1 TCAGGTCTCCGGCGATGGCGATCTGAGGCCGGAGGCTGCTTGCTTCTGCTTGCATGGAGC 63
************************************************************
consensus_9166#0 GGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGG 180
consensus_9166#1 GGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGGG 123
************************************************************
consensus_9166#0 AGGTACCCAAGGAGGTGTACAACAACTTGG-ACACGGGGGCTC-AGGATGAGAAATGGTG 238
consensus_9166#1 AGGCCCCCAAGGCGGCGCCCACCATCCCCGTATACCCCGGCCCCATGCTGCGTATATGCC 183
*** ******* ** * ** ** * * * ** *** * * * ** * * *
consensus_9166#0 GGAGGGAGTTGACCTTCAGAAGCTCATATTGGCTCATAACAACCTTGAGGTGTTGCGTGA 298
consensus_9166#1 TGCCCGGTCCACCACTCCCCTATCCTCAATTCCTCCCAACAATCCTCCCACCA------- 236
* * * ** * * * *** ***** * *
consensus_9166#0 AGACCTCAGAAATTTGTCTTCGCTCGTTGTATTAAACATTAGTCACAACAATATTTCTTC 358
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 CCTCCCCGCAGCTATTGGAGACCTTCCTTTGCTAAAATCGTTGGATGTATCTTCTAATCA 418
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 AATAAACGCTTTTCCCGAAGAGATTGGTTTTGCGACCGCTTTAGTCAAGGTTGACTGCTC 478
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 AAATAATTGCCTTACAGATCTCCCAGTTAGTCTTGCCAGATGCCTGGAGTTGTCAGAACT 538
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 CAATGCGTCAAACAACACTATATCCGTACTGCCAGATGAACTTGCTGGCTGTTCCAAGTT 598
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 ATTCAGATTGAATCTAGAGGGTAACAAGCTCGTGACGCTATCAGACAAGATGTTTATGTC 658
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 ATGGACAATGCTTACAGAGATGAATGCTGCAAAGAATCTACTGACAGCCATCCCGGATGG 718
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 TATTGGTGCACTGTCAAAGCTAATTCGTCTGGACCTGCATCAGAACAAAATAACCCTGAT 778
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 TCCTCCTTCCATAAAAGATTGCTCTTCTCTAGCAGAGTTTTATATGGGAAATAACTTGTT 838
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 GACATCCATACCAGAGGATATTGGCATGCTATCGAACTTGGGAATACTTGATCTACACTC 898
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 TAACCAGCTAAAGGAGTATCCTGTCGGGGCTTGTAGACTCAAGCTCTCTTTCCTTGATCT 958
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 ATCAAACAACTCATTATCTGGTCTGCCTGCTGAACTAGGTACTATGACAACCCTAAGAAA 1018
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 GCTTCTGCTTACTGGTAATCCTATGAGGACACTTCGGAGTTTCTTGGTTTCTGGACCAAC 1078
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 AACAGCATTATTAAAGTATCTGCGCAGTCGGCTTTCATCTGATGAAGGAGCATCAGGATC 1138
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 TGGAAGCACTCCAACAAAAGATGATCAAATTGCTGCAGCAAGAAGATTGTCTTTATCTTC 1198
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 TAAGGAACTGGACTTGAGTGGTCTTGGTGTGACCAGTGTACCACCTGCAGCTTGGGAGAC 1258
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 AAATGATGTGATGAAACTAGATCTTTCTAAGAATTCAATAGAAGATCTGCCAAACGAGTT 1318
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 GTCATTATGCTCGTCACTTCAATCTTTGATTTTGTCTAACAACAAAATTAAAAGGTGGCC 1378
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 TGGCACCGTATTCTCCTCCCTTGCCAGCCTTTCTTTGTTAAAGCTAGACAACAATCCTTT 1438
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 GGCAGAGATATTGGCTACTGATCTTGAGGCCCTGTCTAAACTTGAAGTACTAGATTTAAG 1498
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 TGGCAGTGCTTCTTCTCTACCTGAACCCTCTGCGGTTTCGAAATTACCTCACCTAAAGGA 1558
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 ACTCTACCTAAGACGAATGAAACTCCATGGATTTCCTGATAGTTTATTGGGCTTAAAACT 1618
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 GCTGCGAATTCTTGATCTGAGTCAGAATTATCTTACATCTGTGCCAGAGGGTATCAAAGA 1678
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 TTTAACTTCTTTGATTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGA 1738
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 GCTGGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCAGGAG 1798
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 CATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTTTGAAGTATCTCAAAGAAAA 1858
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 GCTACCTGCTGAATAAATTCTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCA 1918
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 GTTCGGCCCTCTCGAACTGCAGTTACCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTT 1978
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 TTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGATCGTTATCATTCTCCT 2038
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 CATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTTTCAGCTTGTGTATAACCAACCTT 2098
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 GTATGCAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTC 2158
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 CCGCACGTGTGAAAAAAAATCTGCCGCCACAAGTGAAACTTTGTTTCTTGCCAAAGAAGC 2218
consensus_9166#1 ------------------------------------------------------------
consensus_9166#0 CGTTCCTAAAGAATAAAAAAAAATATTATTGGAAAAAAAAAAAAAAAAAAAAA 2271
consensus_9166#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||