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Oryza sativa
cluster # 9169 cluster # 9169       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9169#0 length = 675 sequences # 3  
consensus_9169#1 length = 602 sequences # 2  
consensus_9169#2 length = 386 sequences # 1  

consensusID : consensus_9169#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 675
fasta sequence
                              [TTTTGGAAAGAAACAGAATGATCCGCCATATCTTGATTTCTCACTTAAAAAATTTTTTTGTTACAGGAAATTTCTGT-AATGAACCCAAAAAAAATTACCAATAG-TTTGGTGAGTAATACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAG-CAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAA-ACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTA-CAAAAAGTGCTCGCGTCGACTATGGCA-GACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAG-AAAGCACTATCACAAAATATCT-CTT-AATCCCTCCCTT--GAACCAAGGCATTCTTGGGGATTAGCATAGAAATAGTCCTCTTCCTTGGGCCGGCCAGGGATGACCTTTCTTTCTGTCGG]

[-] EMBL BQ906966             [TTTTGGAAAGAAACAGAATGATCCGCCATATCTTGATTTCTCACTTAAAAAAATAATGTGTTACAGGAAATTTCTGT AATGAACCCAAAAAAAATTACCAATAG TTTGGTGAGTAATACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAG CAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAA ACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGcgg                                                                                                                                                                                                                              ]
[+] EMBL CF325683             [                                                    TTTTTTTGTTACAGGAAATTTCTGT AATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAG CAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAA ACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTA CAAAAAGTGCTCGCGTCGACTATGGCA GACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAG AAAGCACTATCACAAAATATCT CTT AATCCCTCCCTT  GAACCAAGGCATTCTTGGGGATTAGCATAGAAATAGTCCTCTTCCTTGGGCCGGCCAGGGATGACCTTTCTTTCTGTCGG]
[-] EMBL BI812197             [                                                    TTTTTTTTTTACAGGAAATTTCTGTAAATGAACCCAAAAAAAATTACCAATAG TTTGGTGAGTAATACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGGCCCTAAACAAGGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAAATAAATAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCCAGATTGGATG TCGTCTCTTCTTTGAAGTCTGAA CCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAACACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACCACAAAGTGCTCGCGTCGACTATGGCACGACGCTGCAGGAACCAATATTCATCGG TGGGCTGC ACTTTCAGCACAGCCCTATCACAAAATATCTCCTTAAATCCCTCCCTTTGGAACC AGGCATTCCTG                                                               ]


>consensus_9169#0 TTTTGGAAAGAAACAGAATGATCCGCCATATCTTGATTTCTCACTTAAAAAATTTTTTTG TTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGTTTGGTGAGTAATACA AAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTT CTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAG AAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAA GTATAACTGATGGGAGAAATGAGCAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACC CGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTT GAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCA GCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAACCAATATTCATCGG TTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAATCCCTCCCTTGAACC AAGGCATTCTTGGGGATTAGCATAGAAATAGTCCTCTTCCTTGGGCCGGCCAGGGATGAC CTTTCTTTCTGTCGG



consensusID : consensus_9169#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 602
fasta sequence
                              [CCCGGGCTGTTTGAATTCGGCACGAGGTTTTTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATTATTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAATCCCTCCCTTGAACCAGGCATTCTTGGGGATTAGCATAGA]

[+] EMBL CF326013             [CCCGGGCTGTTTGAATTCGGCACGAGGTTTTTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATTATTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAATCCCTCCCTTGAACCAGGCATTCTTGGGGATTAGCATAGA]
[+] EMBL CF325401             [                            TTTTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAACCAATATTCATCGGTTGGGC                                                                               ]


>consensus_9169#1 CCCGGGCTGTTTGAATTCGGCACGAGGTTTTTTTTGTTACAGGAAATTTCTGTAATGAAC CCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCA GAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATTATTATGATCAGAGTCA AGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATG GAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAG CAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCA GCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTTGAGATGTCAACTAGCCTGTACCT GAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTC GACTATGGCAGACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGC ACTATCACAAAATATCTCTTAATCCCTCCCTTGAACCAGGCATTCTTGGGGATTAGCATA GA



consensusID : consensus_9169#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence
                              [TTTTTTTTTTGGAAAGAAACAGAATGATCCGGCATATCTTGATTTCTCACTTAAAAAAATAATGTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGGTTTTGGGTGAGTAATACAAAAGGCTTCTGAGGGAAACTCCTCAGAGACAAGGTGGGGGGAACACTATGGAGGGACCGTGGAACTTCATAACATTTCCAGGTAGTGGATCCAAGGAGTCGTCCAAAGAGAGTGGTATACAACGTGGGCCCCCCGTTAAACACCACACGTGGGGGAAAACCAACAGAGAAAGGCAGGANAGNAAAGTGGGACACNTGCACAAGTGGGAAAACACCCGTGANCCCAGACCTTAGANCTAATTCCAGAAGAACTTACAT]

[-] EMBL BQ906179             [TTTTTTTTTTGGAAAGAAACAGAATGATCCGGCATATCTTGATTTCTCACTTAAAAAAATAATGTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGGTTTTGGGTGAGTAATACAAAAGGCTTCTGAGGGAAACTCCTCAGAGACAAGGTGGGGGGAACACTATGGAGGGACCGTGGAACTTCATAACATTTCCAGGTAGTGGATCCAAGGAGTCGTCCAAAGAGAGTGGTATACAACGTGGGCCCCCCGTTAAACACCACACGTGGGGGAAAACCAACAGAGAAAGGCAGGANAGNAAAGTGGGACACNTGCACAAGTGGGAAAACACCCGTGANCCCAGACCTTAGANCTAATTCCAGAAGAACTTACAT]


>consensus_9169#2 TTTTTTTTTTGGAAAGAAACAGAATGATCCGGCATATCTTGATTTCTCACTTAAAAAAAT AATGTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGGTTTTGGGTG AGTAATACAAAAGGCTTCTGAGGGAAACTCCTCAGAGACAAGGTGGGGGGAACACTATGG AGGGACCGTGGAACTTCATAACATTTCCAGGTAGTGGATCCAAGGAGTCGTCCAAAGAGA GTGGTATACAACGTGGGCCCCCCGTTAAACACCACACGTGGGGGAAAACCAACAGAGAAA GGCAGGANAGNAAAGTGGGACACNTGCACAAGTGGGAAAACACCCGTGANCCCAGACCTT AGANCTAATTCCAGAAGAACTTACAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9169#0      ------TTTTGGAAAGAAACAGAATGATCCGCCATATCTTGATTTCTCACTTAAAAAATT 54
consensus_9169#1      ---------------------------CCCGGGCTGTTTGAATTCGGCAC---GAGGTTT 30
consensus_9169#2      TTTTTTTTTTGGAAAGAAACAGAATGATCCGGCATATCTTGATTTCTCACTTAAAAAAAT 60
                                                  ***   * * *  ***   ***    *    *

consensus_9169#0      TTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAG--TTT-GGTG 111
consensus_9169#1      TTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAG--TTTTGGTG 88
consensus_9169#2      AATGTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGGTTTTGGGTG 120
                        * **********************************************  *** ****

consensus_9169#0      AGTAATACAAAAGGCTTT--GAGGAAACTCCTCAGAGA--AGGTGGGGGGAACACTATGA 167
consensus_9169#1      AGTACTACAAAAGGCTTT--GAGGAAACTCCTCAGAGA--AGGTGGGGGGAACACTATGA 144
consensus_9169#2      AGTAATACAAAAGGCTTCTGAGGGAAACTCCTCAGAGACAAGGTGGGGGGAACACTATGG 180
                      **** ************     ****************  ******************* 

consensus_9169#0      GGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACA 227
consensus_9169#1      GGACACTGAACTTCTACATTATTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACA 204
consensus_9169#2      AGGGACCG---TGGAACTTCATAACATTTCCAGGTAGTGGATCCAAGGAGTCGTCCAAAG 237
                       *  ** *   *   ** * *  *   *   **  *   *    *    * *    **  

consensus_9169#0      ATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATC 287
consensus_9169#1      ATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATC 264
consensus_9169#2      AGAGTGGTATACAACGTGG--GCCCCCCGTTAAACACCACACGTGGGGGAA-AACCAACA 294
                      *  *    * *  * *  *  *       * ***    * ** **    *  *** **  

consensus_9169#0      AAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATG-CTCGTCTCTTCT 346
consensus_9169#1      AAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATG-CTCGTCTCTTCT 323
consensus_9169#2      GAGAAAGGCAGGANAGNAA--AGTGGGACACNTGCACAAGTGGGAAAACACCCGTGANCC 352
                       ****   **  *    **    ***** *  **  **  * ***   * *   *   * 

consensus_9169#0      TTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCC 406
consensus_9169#1      TTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCC 383
consensus_9169#2      CAGACCTTAGANCTAATTCCAGAAGAACTTACAT-------------------------- 386
                        **  *  ** *   **      ** ***   *                          

consensus_9169#0      AGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGG 466
consensus_9169#1      AGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGG 443
consensus_9169#2      ------------------------------------------------------------
                                                                                  

consensus_9169#0      AAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAA 526
consensus_9169#1      AAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAA 503
consensus_9169#2      ------------------------------------------------------------
                                                                                  

consensus_9169#0      CCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAAT 586
consensus_9169#1      CCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAAT 563
consensus_9169#2      ------------------------------------------------------------
                                                                                  

consensus_9169#0      CCCTCCCTTGAACCAAGGCATTCTTGGGGATTAGCATAGAAATAGTCCTCTTCCTTGGGC 646
consensus_9169#1      CCCTCCCTTGAACCA-GGCATTCTTGGGGATTAGCATAGA-------------------- 602
consensus_9169#2      ------------------------------------------------------------
                                                                                  

consensus_9169#0      CGGCCAGGGATGACCTTTCTTTCTGTCGG 675
consensus_9169#1      -----------------------------
consensus_9169#2      -----------------------------
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)