These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 675 fasta sequence [TTTTGGAAAGAAACAGAATGATCCGCCATATCTTGATTTCTCACTTAAAAAATTTTTTTGTTACAGGAAATTTCTGT-AATGAACCCAAAAAAAATTACCAATAG-TTTGGTGAGTAATACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAG-CAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAA-ACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTA-CAAAAAGTGCTCGCGTCGACTATGGCA-GACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAG-AAAGCACTATCACAAAATATCT-CTT-AATCCCTCCCTT--GAACCAAGGCATTCTTGGGGATTAGCATAGAAATAGTCCTCTTCCTTGGGCCGGCCAGGGATGACCTTTCTTTCTGTCGG] [-] EMBL BQ906966 [TTTTGGAAAGAAACAGAATGATCCGCCATATCTTGATTTCTCACTTAAAAAAATAATGTGTTACAGGAAATTTCTGT AATGAACCCAAAAAAAATTACCAATAG TTTGGTGAGTAATACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAG CAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAA ACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGcgg ] [+] EMBL CF325683 [ TTTTTTTGTTACAGGAAATTTCTGT AATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAG CAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAA ACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTA CAAAAAGTGCTCGCGTCGACTATGGCA GACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAG AAAGCACTATCACAAAATATCT CTT AATCCCTCCCTT GAACCAAGGCATTCTTGGGGATTAGCATAGAAATAGTCCTCTTCCTTGGGCCGGCCAGGGATGACCTTTCTTTCTGTCGG] [-] EMBL BI812197 [ TTTTTTTTTTACAGGAAATTTCTGTAAATGAACCCAAAAAAAATTACCAATAG TTTGGTGAGTAATACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGGCCCTAAACAAGGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAAATAAATAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCCAGATTGGATG TCGTCTCTTCTTTGAAGTCTGAA CCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAACACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACCACAAAGTGCTCGCGTCGACTATGGCACGACGCTGCAGGAACCAATATTCATCGG TGGGCTGC ACTTTCAGCACAGCCCTATCACAAAATATCTCCTTAAATCCCTCCCTTTGGAACC AGGCATTCCTG ] consensusID : consensus_9169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 602 fasta sequence [CCCGGGCTGTTTGAATTCGGCACGAGGTTTTTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATTATTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAATCCCTCCCTTGAACCAGGCATTCTTGGGGATTAGCATAGA] [+] EMBL CF326013 [CCCGGGCTGTTTGAATTCGGCACGAGGTTTTTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATTATTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAATCCCTCCCTTGAACCAGGCATTCTTGGGGATTAGCATAGA] [+] EMBL CF325401 [ TTTTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAACCAATATTCATCGGTTGGGC ] consensusID : consensus_9169#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [TTTTTTTTTTGGAAAGAAACAGAATGATCCGGCATATCTTGATTTCTCACTTAAAAAAATAATGTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGGTTTTGGGTGAGTAATACAAAAGGCTTCTGAGGGAAACTCCTCAGAGACAAGGTGGGGGGAACACTATGGAGGGACCGTGGAACTTCATAACATTTCCAGGTAGTGGATCCAAGGAGTCGTCCAAAGAGAGTGGTATACAACGTGGGCCCCCCGTTAAACACCACACGTGGGGGAAAACCAACAGAGAAAGGCAGGANAGNAAAGTGGGACACNTGCACAAGTGGGAAAACACCCGTGANCCCAGACCTTAGANCTAATTCCAGAAGAACTTACAT] [-] EMBL BQ906179 [TTTTTTTTTTGGAAAGAAACAGAATGATCCGGCATATCTTGATTTCTCACTTAAAAAAATAATGTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGGTTTTGGGTGAGTAATACAAAAGGCTTCTGAGGGAAACTCCTCAGAGACAAGGTGGGGGGAACACTATGGAGGGACCGTGGAACTTCATAACATTTCCAGGTAGTGGATCCAAGGAGTCGTCCAAAGAGAGTGGTATACAACGTGGGCCCCCCGTTAAACACCACACGTGGGGGAAAACCAACAGAGAAAGGCAGGANAGNAAAGTGGGACACNTGCACAAGTGGGAAAACACCCGTGANCCCAGACCTTAGANCTAATTCCAGAAGAACTTACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9169#0 ------TTTTGGAAAGAAACAGAATGATCCGCCATATCTTGATTTCTCACTTAAAAAATT 54 consensus_9169#1 ---------------------------CCCGGGCTGTTTGAATTCGGCAC---GAGGTTT 30 consensus_9169#2 TTTTTTTTTTGGAAAGAAACAGAATGATCCGGCATATCTTGATTTCTCACTTAAAAAAAT 60 *** * * * *** *** * * consensus_9169#0 TTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAG--TTT-GGTG 111 consensus_9169#1 TTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAG--TTTTGGTG 88 consensus_9169#2 AATGTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGGTTTTGGGTG 120 * ********************************************** *** **** consensus_9169#0 AGTAATACAAAAGGCTTT--GAGGAAACTCCTCAGAGA--AGGTGGGGGGAACACTATGA 167 consensus_9169#1 AGTACTACAAAAGGCTTT--GAGGAAACTCCTCAGAGA--AGGTGGGGGGAACACTATGA 144 consensus_9169#2 AGTAATACAAAAGGCTTCTGAGGGAAACTCCTCAGAGACAAGGTGGGGGGAACACTATGG 180 **** ************ **************** ******************* consensus_9169#0 GGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACA 227 consensus_9169#1 GGACACTGAACTTCTACATTATTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACA 204 consensus_9169#2 AGGGACCG---TGGAACTTCATAACATTTCCAGGTAGTGGATCCAAGGAGTCGTCCAAAG 237 * ** * * ** * * * * ** * * * * * ** consensus_9169#0 ATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATC 287 consensus_9169#1 ATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATC 264 consensus_9169#2 AGAGTGGTATACAACGTGG--GCCCCCCGTTAAACACCACACGTGGGGGAA-AACCAACA 294 * * * * * * * * * *** * ** ** * *** ** consensus_9169#0 AAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATG-CTCGTCTCTTCT 346 consensus_9169#1 AAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATG-CTCGTCTCTTCT 323 consensus_9169#2 GAGAAAGGCAGGANAGNAA--AGTGGGACACNTGCACAAGTGGGAAAACACCCGTGANCC 352 **** ** * ** ***** * ** ** * *** * * * * consensus_9169#0 TTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCC 406 consensus_9169#1 TTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCC 383 consensus_9169#2 CAGACCTTAGANCTAATTCCAGAAGAACTTACAT-------------------------- 386 ** * ** * ** ** *** * consensus_9169#0 AGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGG 466 consensus_9169#1 AGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGG 443 consensus_9169#2 ------------------------------------------------------------ consensus_9169#0 AAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAA 526 consensus_9169#1 AAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAA 503 consensus_9169#2 ------------------------------------------------------------ consensus_9169#0 CCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAAT 586 consensus_9169#1 CCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAAT 563 consensus_9169#2 ------------------------------------------------------------ consensus_9169#0 CCCTCCCTTGAACCAAGGCATTCTTGGGGATTAGCATAGAAATAGTCCTCTTCCTTGGGC 646 consensus_9169#1 CCCTCCCTTGAACCA-GGCATTCTTGGGGATTAGCATAGA-------------------- 602 consensus_9169#2 ------------------------------------------------------------ consensus_9169#0 CGGCCAGGGATGACCTTTCTTTCTGTCGG 675 consensus_9169#1 ----------------------------- consensus_9169#2 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||