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Oryza sativa
cluster # 9173 cluster # 9173       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9173#0 length = 1769 sequences # 4  
consensus_9173#1 length = 731 sequences # 1  
consensus_9173#2 length = 703 sequences # 1  

consensusID : consensus_9173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1769
fasta sequence
                              [AAAACCCTAAACCCTAGCAATCCCCACCCTCTTCCTCGCCGCACGGTTCCAGGGGTCGCCGCTGCCGTCGCCGCCGCCGCCGCCGACGACGACGACATGGCGAACCTCCTGAGGCGCGCGTCGCTGCGGCGCGCCGTCGCCGCCGTCGCGGCAGCAGCCGCGCCCTGCCCCGAGAGCTATAAGCAAGGGATCTGTGGCTCTACTTTCCACTGCCGGTATTTCTCGTCTAAAGCCAAAAAGAAGACAAAGTCCAGTGGAACTGACTCTGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCTCTACACCAGGCTATTGATCAAATAACATCTGCATTTGGGAAGGGCGCAATAATGTGGCTTGGTCGTTCTGAAGGTCGTAGAGAAGTACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGATTTGGCATTGGGAACTGGTGGACTTCCAAAGGGTCGTGTTATAGAGGTGTATGGTCCAGAAGCTTCAGGCAAGACAACTCTTGCACTTCACGTTATTGCAGAAGCACAAAAGCATGGCGGTTATTGTGCCTTCGTAGATGCAGAGCATGCCTTAGATCCAGCTCTGGCTGAATCAATTGGGGTCAACACCAGTAATTTACTTCTCTCTCAGCCAGACTGTGGCGAGCAGGCACTCAGTCTTGTGGACACACTGATTCGAAGCGGCTCTGTTGATGTTGTTGTTGTTGATAGTGTAGCAGCTCTTGTCCCTAAGAGTGAGCTTGACGGGGAGATGGGTGATGCACATGTTGCTCTCCAGGCTAGATTGATGAGCCAAGCTCTTCGCAAGCTGAGCCACTCTCTCTCACTTTCCCAGACAATTTTGTTATTCATTAACCAGATCAGGTCTAAAGTGACCACATTTGGAGGATTTGGAGGTCCAATGGAGGTTACTTCTGGTGGAAATGCCCTTAAATTCTATGCTTCCGTTAGAATGAACATCAAGCGTATTGGTTTGGTAAAGAAAGGCGAAGAGACTATAGGTAGTCAAGTGCTTGTGAAGATTGTGAAAAACAAGCATGCCCCACCGTTCAAGACAGCACAGTTTGAGCTGGAATTTGGTAAAGGGATATGCCGCAGTTCAGAGCTTATTGAACTTGGATTAAAGCACAAGCTTGTCAAAAAGTTGGGTGGTGCATTTTATTCTTTCAACGAAGAGTCATATCGTGGTAAAGATGCCCTTAAATCTTACCTCAACGAAAATGAAAGTATCGCAAAAGAACTGGAGACGAATTTAAGGAAATTGATGGAAACTCAAGCACCTAAAAAGCAGGAGGATGAAGGTGATTTCCTGAGTGATCTGCCTGAAGAGAGTCTCGCCACTGAAACATCCTCCGAGGAGGAACTGGCAGCTGTAATAGAAGCTTAATCAGTGATGCTTAATCAGTGATGATAGATCAACAAGAAGGAATATGCGCTGAGCAGTTATTCCACTGAACCATACATATTTTGGTTCTTGGAGATGTCATTTTGGCTGCACCGGGCATATAGAATGTGTGGAATTCGTATTTGAACATCCTTCAGTTGTCAAATGCCTGGAGCGAAGTGAGGTAGAGCCGGGGAAGGACCGGGGGGCTTACGTATGGACTTGTATGGTGGCTATTTAGACATTGAAAGGGTTATTAGTAGAATGTAACCATGTATATATGTCGCATATCTGGGATTCCTCGTCGGTTCTGGCTTGAGATACACTTACTAAATGCTTCTGATATTTGATTATTCCGGTTCCATTCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK103365             [AAAACCCTAAACCCTAGCAATCCCCACCCTCTTCCTCGCCGCACGGTTCCAGGGGTCGCCGCTGCCGTCGCCGCCGCCGCCGCCGACGACGACGACATGGCGAACCTCCTGAGGCGCGCGTCGCTGCGGCGCGCCGTCGCCGCCGTCGCGGCAGCAGCCGCGCCCTGCCCCGAGAGCTATAAGCAAGGGATCTGTGGCTCTACTTTCCACTGCCGGTATTTCTCGTCTAAAGCCAAAAAGAAGACAAAGTCCAGTGGAACTGACTCTGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCTCTACACCAGGCTATTGATCAAATAACATCTGCATTTGGGAAGGGCGCAATAATGTGGCTTGGTCGTTCTGAAGGTCGTAGAGAAGTACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGATTTGGCATTGGGAACTGGTGGACTTCCAAAGGGTCGTGTTATAGAGGTGTATGGTCCAGAAGCTTCAGGCAAGACAACTCTTGCACTTCACGTTATTGCAGAAGCACAAAAGCATGGCGGTTATTGTGCCTTCGTAGATGCAGAGCATGCCTTAGATCCAGCTCTGGCTGAATCAATTGGGGTCAACACCAGTAATTTACTTCTCTCTCAGCCAGACTGTGGCGAGCAGGCACTCAGTCTTGTGGACACACTGATTCGAAGCGGCTCTGTTGATGTTGTTGTTGTTGATAGTGTAGCAGCTCTTGTCCCTAAGAGTGAGCTTGACGGGGAGATGGGTGATGCACATGTTGCTCTCCAGGCTAGATTGATGAGCCAAGCTCTTCGCAAGCTGAGCCACTCTCTCTCACTTTCCCAGACAATTTTGTTATTCATTAACCAGATCAGGTCTAAAGTGACCACATTTGGAGGATTTGGAGGTCCAATGGAGGTTACTTCTGGTGGAAATGCCCTTAAATTCTATGCTTCCGTTAGAATGAACATCAAGCGTATTGGTTTGGTAAAGAAAGGCGAAGAGACTATAGGTAGTCAAGTGCTTGTGAAGATTGTGAAAAACAAGCATGCCCCACCGTTCAAGACAGCACAGTTTGAGCTGGAATTTGGTAAAGGGATATGCCGCAGTTCAGAGCTTATTGAACTTGGATTAAAGCACAAGCTTGTCAAAAAGTTGGGTGGTGCATTTTATTCTTTCAACGAAGAGTCATATCGTGGTAAAGATGCCCTTAAATCTTACCTCAACGAAAATGAAAGTATCGCAAAAGAACTGGAGACGAATTTAAGGAAATTGATGGGAACTCAAGCACCTAAAAAGCAGGAGGATGAAGGTGATTTCCTGAGTGATCTGCCTGAAGAGAGTCTCGCCACTGAAACATCCTCCGAGGAGGAACTGGCAGCTGTAATAGAAGCTTAATCAGTGATGCTTAATCAGTGATGATAGATCAACAAGAAGGAATATGCGCTGAGCAGTTATTCCACTGAACCATACATATTTTGGTTCTTGGAGATGTCATTTTGGCTGCACCGGGCATATAGAATGTGTGGAATTCGTATTTGAACATCCTTCAGTTGTCAAATGCCTGGAGCGAAGTGAGGTAGAGCCGGGGAAGGACCGGGGGGCTTACGTATGGACTTGTATGGTGGCTATTTAGACATTGAAAGGGTTATTAGTAGAATGTAACCATGTATATATGTCGCATATCTGGGATTCCTCGTCGGTTCTGGCTTGAGATACACTTACTAAATGCTTCTGATATTTGATTATTCCG                            ]
[-] EMBL CB632313             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTAGTCAAGTGCTTGTGAAGATTGTGAAAAACAAGCATGCCCCACCATTCAAGACAGCACAGTTTGAGCTGGAATTTGGTAAAGGGATATGCCGCAGTTCAGAGCTTATTGAACTTGGATTAAAGCACAAGCTTGTCAAAAAGTTGGGTGGTGCATTTTATTCTTTCAACGAAGAGTCATATCGTGGTAAAGATGCCCTTAAATCTTACCTCAACGAAAATGAAAGTATCGCGAAAGAACTGGAGACGAATTTAAGGAAATTGATGGAAACTCAAGCACCTAAAAAGCAGGAGGATGAAGGTGATTTCCTGAGTGATCTGCCTGAAGAGAGTCTCGCCACTGAAACATCCTCCGAGGAGGAACTGGCAGCTGTAATAGAAGCTTAATCAGTGATGCTTAATCAGTGATGATAGATCAACAAGAAGGAATATGCGCTGAGCAGTTATTCCACTGAACCATACATATTTTGGTTCTTGGAGATGTCATTTTGGCTGCACCGGGCATATAGAATGTGTGGAATTCGTATTTGAACATCCTTCAGTTGTCAAATGCCTGGAGCGAAGTGAGGTAGAGCCGGGGAAGGACCGGGGGGCTTACGTATGGACTTGTATGGTGGCTATTTAGACATTGAAAGGGTTATTAGTAGAATGTAACCATGTATATATGTCGCATATCTGGGATTCCTCGTCGGTTCTGGCTTGAGATACACTTACTAAATGCTTGTGATATTTGATTATTCCGG                           ]
[+] EMBL C98396               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CACAGTTTGAGCTGGAATTTGGTAAAGGGATATNCCGCAGTTCAGAGCTTATTGAACTTGGATTAAAGCACAAGCTTGTCAAAAATTTGGGTGGTNCATTTTATTCTTTCAACGAAGAGTCATATCGTGGTAAAGATNCCCTTAAATCTTACCTCAACGAAAATGAAAGTATCGCAAAAGAACTGGAGACGAATTTAAGGAAATTGATGGAAACTCAAGCACCTAAAAAGCAGGAGGATGAAGGTGATTTCCTGAGTGATCTNCCTGAAGAGAGTCTCGCCACTGAAACATCCTCCGAGGAGGAACTGGCAGCTGTAATAGAAGCTTAATCAGTGATGCTTAATCAGTGATGATAGATCAACAAGAAGGAATATGCGCTGAGCAGTTATTCCACTGAACCATACATATTTTGGTTCTTGGAGATGTCATTTTGGCTGCACCGGGCATATAGAATGTGTGGAATNCGTATTTGAACNTCCTTCAGTTGTCAAATGCCTGGAGCGAAGTGAGGTAGAGCCGGGGAAGGACCGGGGGGCTTACGTATGGACTTGTATGGTGGCTATTTAGACATTGAAAGGGTTATTAGTAGAATGTAACCATGTATATATGTCGCATATCTGGGATTCCTCGTCGGTTCTGGCTTGAGATACACTTACTAAATGCTTCTGATATTTGATTATTCCGGTTCCATTCAAAAAAAAAA         ]
[-] EMBL CF325724             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTATCGCAAAAGAACTGGAGACGAATTTAAGGAAATTGATGGAAACTCAAGCACCTAAAAAGCAGGAGGATGAAGGTGATTTCCTGAGTGATCTGCCTGAAGAGAGTCTCGCCACTGAAACATCCTCCGAGGAGGAACTGGCAGCTGTAATAGAAGCTTAATCAGTGATGCTTAATCAGTGATGATAGATCAACAAGAAGGAATATGCGCTGAGCAGTTATTCCACTGAACCATACATATTTTGGTTCTTGGAGATGTCATTTTGGCTGCACCGGGCATATAGAATGTGTGGAATTCGTATTTGAACATCCTTCAGTTGTCAAATGCCTGGAGCGAAGTGAGGTAGAGCCGGGGAAGGACCGGGGGGCTTACGTATGGACTTGTATGGTGGCTATTTAGACATTGAAAGGGTTATTAGTAGAATGTAACCATGTATATATGTCGCATATCTGGGATTCCTCGTCGGTTCTGGCTTGAGATACACTTACTAAATGCTTCTGATATTTGATTATTCCGGTTCAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9173#0 AAAACCCTAAACCCTAGCAATCCCCACCCTCTTCCTCGCCGCACGGTTCCAGGGGTCGCC GCTGCCGTCGCCGCCGCCGCCGCCGACGACGACGACATGGCGAACCTCCTGAGGCGCGCG TCGCTGCGGCGCGCCGTCGCCGCCGTCGCGGCAGCAGCCGCGCCCTGCCCCGAGAGCTAT AAGCAAGGGATCTGTGGCTCTACTTTCCACTGCCGGTATTTCTCGTCTAAAGCCAAAAAG AAGACAAAGTCCAGTGGAACTGACTCTGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCT CTACACCAGGCTATTGATCAAATAACATCTGCATTTGGGAAGGGCGCAATAATGTGGCTT GGTCGTTCTGAAGGTCGTAGAGAAGTACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGAT TTGGCATTGGGAACTGGTGGACTTCCAAAGGGTCGTGTTATAGAGGTGTATGGTCCAGAA GCTTCAGGCAAGACAACTCTTGCACTTCACGTTATTGCAGAAGCACAAAAGCATGGCGGT TATTGTGCCTTCGTAGATGCAGAGCATGCCTTAGATCCAGCTCTGGCTGAATCAATTGGG GTCAACACCAGTAATTTACTTCTCTCTCAGCCAGACTGTGGCGAGCAGGCACTCAGTCTT GTGGACACACTGATTCGAAGCGGCTCTGTTGATGTTGTTGTTGTTGATAGTGTAGCAGCT CTTGTCCCTAAGAGTGAGCTTGACGGGGAGATGGGTGATGCACATGTTGCTCTCCAGGCT AGATTGATGAGCCAAGCTCTTCGCAAGCTGAGCCACTCTCTCTCACTTTCCCAGACAATT TTGTTATTCATTAACCAGATCAGGTCTAAAGTGACCACATTTGGAGGATTTGGAGGTCCA ATGGAGGTTACTTCTGGTGGAAATGCCCTTAAATTCTATGCTTCCGTTAGAATGAACATC AAGCGTATTGGTTTGGTAAAGAAAGGCGAAGAGACTATAGGTAGTCAAGTGCTTGTGAAG ATTGTGAAAAACAAGCATGCCCCACCGTTCAAGACAGCACAGTTTGAGCTGGAATTTGGT AAAGGGATATGCCGCAGTTCAGAGCTTATTGAACTTGGATTAAAGCACAAGCTTGTCAAA AAGTTGGGTGGTGCATTTTATTCTTTCAACGAAGAGTCATATCGTGGTAAAGATGCCCTT AAATCTTACCTCAACGAAAATGAAAGTATCGCAAAAGAACTGGAGACGAATTTAAGGAAA TTGATGGAAACTCAAGCACCTAAAAAGCAGGAGGATGAAGGTGATTTCCTGAGTGATCTG CCTGAAGAGAGTCTCGCCACTGAAACATCCTCCGAGGAGGAACTGGCAGCTGTAATAGAA GCTTAATCAGTGATGCTTAATCAGTGATGATAGATCAACAAGAAGGAATATGCGCTGAGC AGTTATTCCACTGAACCATACATATTTTGGTTCTTGGAGATGTCATTTTGGCTGCACCGG GCATATAGAATGTGTGGAATTCGTATTTGAACATCCTTCAGTTGTCAAATGCCTGGAGCG AAGTGAGGTAGAGCCGGGGAAGGACCGGGGGGCTTACGTATGGACTTGTATGGTGGCTAT TTAGACATTGAAAGGGTTATTAGTAGAATGTAACCATGTATATATGTCGCATATCTGGGA TTCCTCGTCGGTTCTGGCTTGAGATACACTTACTAAATGCTTCTGATATTTGATTATTCC GGTTCCATTCAAAAAAAAAAAAAAAAAAA



consensusID : consensus_9173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 731
fasta sequence
                              [CCCTCTTCCTCGCCGCACGGTTCCAGGGGTCGCCGCTGCCGTCGCCGCCGCCGCCGCTGACGACGACGACATGGCGAACCTCCTGAGGCGCGCGTCGCTGCGGCGCGCCGTCGCCGCCGTCGCGGCAGCAGCCGCGCCCTGCCCCGAGAGCTATAAGCAAGGGATCTGTGGCTCTACTTTCCACTGCCGGTATTTCTCGTCTAAAGCCAAAAAGAAGACAAAGTCCAGTGGAACTGACTCTGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCTCTACACCAGGCTATTGATCAAATAACATCTGCATTTGGGAAGGGCGCAATAATGTGGCTTGGTCGTTCTGAAGGTCGTAGAGAAGTACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGATTTGGCATTGGGAACTGGTGGACTTCCAAAGGTAAGGATTCCTATGTAGTTACAAAATATCTTGTAAGTAGAATCTCACTTGTATCAATGTTTAATTTGTATGGCATGCTATTCTTTGCAAATCTAAGTTCTGCTGAGTGTTAACTACCCTAAAAATTAGTCTTCTCTCATCATATGAAGTGTGCAAATGTTCTTTCATGGACAAAACATACTTTGTTTTGTATGAATGTCATGCTATTGTTCTCTGTAGGGTCGTGTTATAGAGGTGTATGGTCCAGAAGCTTCAGGCAAGACAACTCTTGCACTTCACGTTATTGCAGAAGCACAAAAGCATGGCG]

[+] EMBL CB632312             [CCCTCTTCCTCGCCGCACGGTTCCAGGGGTCGCCGCTGCCGTCGCCGCCGCCGCCGCTGACGACGACGACATGGCGAACCTCCTGAGGCGCGCGTCGCTGCGGCGCGCCGTCGCCGCCGTCGCGGCAGCAGCCGCGCCCTGCCCCGAGAGCTATAAGCAAGGGATCTGTGGCTCTACTTTCCACTGCCGGTATTTCTCGTCTAAAGCCAAAAAGAAGACAAAGTCCAGTGGAACTGACTCTGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCTCTACACCAGGCTATTGATCAAATAACATCTGCATTTGGGAAGGGCGCAATAATGTGGCTTGGTCGTTCTGAAGGTCGTAGAGAAGTACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGATTTGGCATTGGGAACTGGTGGACTTCCAAAGGTAAGGATTCCTATGTAGTTACAAAATATCTTGTAAGTAGAATCTCACTTGTATCAATGTTTAATTTGTATGGCATGCTATTCTTTGCAAATCTAAGTTCTGCTGAGTGTTAACTACCCTAAAAATTAGTCTTCTCTCATCATATGAAGTGTGCAAATGTTCTTTCATGGACAAAACATACTTTGTTTTGTATGAATGTCATGCTATTGTTCTCTGTAGGGTCGTGTTATAGAGGTGTATGGTCCAGAAGCTTCAGGCAAGACAACTCTTGCACTTCACGTTATTGCAGAAGCACAAAAGCATGGCG]


>consensus_9173#1 CCCTCTTCCTCGCCGCACGGTTCCAGGGGTCGCCGCTGCCGTCGCCGCCGCCGCCGCTGA CGACGACGACATGGCGAACCTCCTGAGGCGCGCGTCGCTGCGGCGCGCCGTCGCCGCCGT CGCGGCAGCAGCCGCGCCCTGCCCCGAGAGCTATAAGCAAGGGATCTGTGGCTCTACTTT CCACTGCCGGTATTTCTCGTCTAAAGCCAAAAAGAAGACAAAGTCCAGTGGAACTGACTC TGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCTCTACACCAGGCTATTGATCAAATAAC ATCTGCATTTGGGAAGGGCGCAATAATGTGGCTTGGTCGTTCTGAAGGTCGTAGAGAAGT ACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGATTTGGCATTGGGAACTGGTGGACTTCC AAAGGTAAGGATTCCTATGTAGTTACAAAATATCTTGTAAGTAGAATCTCACTTGTATCA ATGTTTAATTTGTATGGCATGCTATTCTTTGCAAATCTAAGTTCTGCTGAGTGTTAACTA CCCTAAAAATTAGTCTTCTCTCATCATATGAAGTGTGCAAATGTTCTTTCATGGACAAAA CATACTTTGTTTTGTATGAATGTCATGCTATTGTTCTCTGTAGGGTCGTGTTATAGAGGT GTATGGTCCAGAAGCTTCAGGCAAGACAACTCTTGCACTTCACGTTATTGCAGAAGCACA AAAGCATGGCG



consensusID : consensus_9173#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence
                              [ACTGNNGNNCATNCTCGTCTAAAGCCAAAAAGAAGACAAAGTCCAGTGGAACTGACTCTGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCTCTACACCAGGCTATTGATCAAATAACATCTGCATTTGGGAAGGGCGCAATAATGTGGCTTGGTCGTTCTGAAGGTCGTAGAGAAGTACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGATTTGGCATTGGGAACTGGTGGACTTCCAAAGGGTCGTGTTATAGAGGTGTATGGTCCAGAAGCTTCAGGCAAGACAACTCTTGCACTTCACGTTATTGCAGAAGCACAAAAGCATGGCGGTTATTGTGCCTTCGTAGATGCAGAGCATGCCTTAGATCCAGCTCTGGCTGAATCAATTGGGGTCAACACCAGTAATTTACTTCTCTCTCAGCCAGAATGTGGCGAGCAGGGCACTCAGTCTTGTGGACACACTGATTCGAAGCGGCTCTGTTTGATGTTGTTGTTGTTGATAGTGTAGCAGCTCTTGTCCCTAAGAGTGAGCTTGANGGGGAGATGGGTGATGCACATGTTGCTCTCCAGGCTAGATTGATGAGCCAAGCTCTTCGCAAGCTGAGCCACTCTCTCTCACTTTCCCAGACAATTTTGTTATTCATTAACCAGATCAGGTCTAAAGTGNCACATTTGGAGGATTTGGAGGTCCAATGGAGGTAC]

[+] EMBL C98395               [ACTGNNGNNCATNCTCGTCTAAAGCCAAAAAGAAGACAAAGTCCAGTGGAACTGACTCTGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCTCTACACCAGGCTATTGATCAAATAACATCTGCATTTGGGAAGGGCGCAATAATGTGGCTTGGTCGTTCTGAAGGTCGTAGAGAAGTACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGATTTGGCATTGGGAACTGGTGGACTTCCAAAGGGTCGTGTTATAGAGGTGTATGGTCCAGAAGCTTCAGGCAAGACAACTCTTGCACTTCACGTTATTGCAGAAGCACAAAAGCATGGCGGTTATTGTGCCTTCGTAGATGCAGAGCATGCCTTAGATCCAGCTCTGGCTGAATCAATTGGGGTCAACACCAGTAATTTACTTCTCTCTCAGCCAGAATGTGGCGAGCAGGGCACTCAGTCTTGTGGACACACTGATTCGAAGCGGCTCTGTTTGATGTTGTTGTTGTTGATAGTGTAGCAGCTCTTGTCCCTAAGAGTGAGCTTGANGGGGAGATGGGTGATGCACATGTTGCTCTCCAGGCTAGATTGATGAGCCAAGCTCTTCGCAAGCTGAGCCACTCTCTCTCACTTTCCCAGACAATTTTGTTATTCATTAACCAGATCAGGTCTAAAGTGNCACATTTGGAGGATTTGGAGGTCCAATGGAGGTAC]


>consensus_9173#2 ACTGNNGNNCATNCTCGTCTAAAGCCAAAAAGAAGACAAAGTCCAGTGGAACTGACTCTG GTGAAGAGAATCTGTCAAAGAAAGACTTGGCTCTACACCAGGCTATTGATCAAATAACAT CTGCATTTGGGAAGGGCGCAATAATGTGGCTTGGTCGTTCTGAAGGTCGTAGAGAAGTAC CTGTTGTGTCAACTGGGTCTTTCTCTTTGGATTTGGCATTGGGAACTGGTGGACTTCCAA AGGGTCGTGTTATAGAGGTGTATGGTCCAGAAGCTTCAGGCAAGACAACTCTTGCACTTC ACGTTATTGCAGAAGCACAAAAGCATGGCGGTTATTGTGCCTTCGTAGATGCAGAGCATG CCTTAGATCCAGCTCTGGCTGAATCAATTGGGGTCAACACCAGTAATTTACTTCTCTCTC AGCCAGAATGTGGCGAGCAGGGCACTCAGTCTTGTGGACACACTGATTCGAAGCGGCTCT GTTTGATGTTGTTGTTGTTGATAGTGTAGCAGCTCTTGTCCCTAAGAGTGAGCTTGANGG GGAGATGGGTGATGCACATGTTGCTCTCCAGGCTAGATTGATGAGCCAAGCTCTTCGCAA GCTGAGCCACTCTCTCTCACTTTCCCAGACAATTTTGTTATTCATTAACCAGATCAGGTC TAAAGTGNCACATTTGGAGGATTTGGAGGTCCAATGGAGGTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9173#0      AAAACCCTAAACCCTAGCAATCCCCACCCTCTTCCTCGCCGCACGGTTCCAGGGGTCGCC 60
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      --------------------------CCCTCTTCCTCGCCGCACGGTTCCAGGGGTCGCC 34
                                                                                  

consensus_9173#0      GCTGCCGTCGCCGCCGCCGCCGCCGACGACGACGACATGGCGAACCTCCTGAGGCGCGCG 120
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      GCTGCCGTCGCCGCCGCCGCCGCTGACGACGACGACATGGCGAACCTCCTGAGGCGCGCG 94
                                                                                  

consensus_9173#0      TCGCTGCGGCGCGCCGTCGCCGCCGTCGCGGCAGCAGCCGCGCCCTGCCCCGAGAGCTAT 180
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      TCGCTGCGGCGCGCCGTCGCCGCCGTCGCGGCAGCAGCCGCGCCCTGCCCCGAGAGCTAT 154
                                                                                  

consensus_9173#0      AAGCAAGGGATCTGTGGCTCTACTTTCCACTGCCGGTATTTCTCGTCTAAAGCCAAAAAG 240
consensus_9173#2      ----------------------------ACTGNNGNNCATNCTCGTCTAAAGCCAAAAAG 32
consensus_9173#1      AAGCAAGGGATCTGTGGCTCTACTTTCCACTGCCGGTATTTCTCGTCTAAAGCCAAAAAG 214
                                                  ****  *    * *******************

consensus_9173#0      AAGACAAAGTCCAGTGGAACTGACTCTGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCT 300
consensus_9173#2      AAGACAAAGTCCAGTGGAACTGACTCTGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCT 92
consensus_9173#1      AAGACAAAGTCCAGTGGAACTGACTCTGGTGAAGAGAATCTGTCAAAGAAAGACTTGGCT 274
                      ************************************************************

consensus_9173#0      CTACACCAGGCTATTGATCAAATAACATCTGCATTTGGGAAGGGCGCAATAATGTGGCTT 360
consensus_9173#2      CTACACCAGGCTATTGATCAAATAACATCTGCATTTGGGAAGGGCGCAATAATGTGGCTT 152
consensus_9173#1      CTACACCAGGCTATTGATCAAATAACATCTGCATTTGGGAAGGGCGCAATAATGTGGCTT 334
                      ************************************************************

consensus_9173#0      GGTCGTTCTGAAGGTCGTAGAGAAGTACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGAT 420
consensus_9173#2      GGTCGTTCTGAAGGTCGTAGAGAAGTACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGAT 212
consensus_9173#1      GGTCGTTCTGAAGGTCGTAGAGAAGTACCTGTTGTGTCAACTGGGTCTTTCTCTTTGGAT 394
                      ************************************************************

consensus_9173#0      TTGGCATTGGGAACTGGTGGACTTCCAAAGGGTCGTGTTATAGAGGTGTATGGTCCAGAA 480
consensus_9173#2      TTGGCATTGGGAACTGGTGGACTTCCAAAGGGTCGTGTTATAGAGGTGTATGGTCCAGAA 272
consensus_9173#1      TTGGCATTGGGAACTGGTGGACTTCCAAAGGTAAGGATTCC-----TATGTAGTTACAAA 449
                      *******************************   *  **       * * * **    **

consensus_9173#0      GCTTCAGGCAAGACAACTCTTGCACTTCACGTTATTGCAGAAGCACAAAAGCATGGCGGT 540
consensus_9173#2      GCTTCAGGCAAGACAACTCTTGCACTTCACGTTATTGCAGAAGCACAAAAGCATGGCGGT 332
consensus_9173#1      ATATCTTGTAAGTAGAATCTCAC---TTGTATCAATGTTTAATTTGTATGGCAT----GC 502
                         **  * ***   * ***  *   *    * * **   **     *  ****    * 

consensus_9173#0      TATTGTGCCTTCGTAGATGCAGAGCATGCCTTAGATCCAGCTCTGGCTGAATCAATTGGG 600
consensus_9173#2      TATTGTGCCTTCGTAGATGCAGAGCATGCCTTAGATCCAGCTCTGGCTGAATCAATTGGG 392
consensus_9173#1      TATT----CTTTGCAAATCTA-----------------AGTTCTG-CTGAGT--GTTAA- 537
                      ****    *** * * **  *                 ** **** **** *   **   

consensus_9173#0      GTCAACACCAGTAATTTACTTCTCTCTCAGCCAGACTGTGGCGAGCAGG-CACTCAGTCT 659
consensus_9173#2      GTCAACACCAGTAATTTACTTCTCTCTCAGCCAGAATGTGGCGAGCAGGGCACTCAGTCT 452
consensus_9173#1      --CTACCCTAAAAATT-AGTCTTCTCTCATC--ATATGAAGTGTGCAAA-TGTTCTTTCA 591
                        * ** * *  **** * *  ******* *     **  * * ***      **  ** 

consensus_9173#0      TGTGGACACACTGATTCGAAGCGGCTCTGTT-GATGTTGTTGTTGTTGATAGTGTAGCAG 718
consensus_9173#2      TGTGGACACACTGATTCGAAGCGGCTCTGTTTGATGTTGTTGTTGTTGATAGTGTAGCAG 512
consensus_9173#1      TGGACAAAACATACTTTGTTTTGTATGAATGTCATGCTATTGTTCTCTGTAGGGTCGT-G 650
                      **   * *   *  ** *    *  *   *   *** * ***** *   *** ** *  *

consensus_9173#0      CTCTTGTCCCTAAGAGTGAGCTTGACGGGGAGATGGGTGATGCACATGTTGCTCTCCAGG 778
consensus_9173#2      CTCTTGTCCCTAAGAGTGAGCTTGANGGGGAGATGGGTGATGCACATGTTGCTCTCCAGG 572
consensus_9173#1      TTATAG-----AGGTGTATGGTCCA-GAAGCTTCAGGCAAGACAACTCTTGCACTTCACG 704
                       * * *     * * **  * *  * *  *     **  *  **  * **** ** ** *

consensus_9173#0      CTAGATTGATGAGCCAAGCTCTTCGCAAGCTGAGCCACTCTCTCTCACTTTCCCAGACAA 838
consensus_9173#2      CTAGATTGATGAGCCAAGCTCTTCGCAAGCTGAGCCACTCTCTCTCACTTTCCCAGACAA 632
consensus_9173#1      TTATTGCAGAAGCACAAAAGCATGGCG--------------------------------- 731
                       **           ***   * * **                                  

consensus_9173#0      TTTTGTTATTCATTAACCAGATCAGGTCTAAAGTGACCACATTTGGAGGATTTGGAGGTC 898
consensus_9173#2      TTTTGTTATTCATTAACCAGATCAGGTCTAAAGTGNC-ACATTTGGAGGATTTGGAGGTC 691
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      CAATGGAGGTTACTTCTGGTGGAAATGCCCTTAAATTCTATGCTTCCGTTAGAATGAACA 958
consensus_9173#2      CAATGGAGGT-AC----------------------------------------------- 703
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      TCAAGCGTATTGGTTTGGTAAAGAAAGGCGAAGAGACTATAGGTAGTCAAGTGCTTGTGA 1018
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      AGATTGTGAAAAACAAGCATGCCCCACCGTTCAAGACAGCACAGTTTGAGCTGGAATTTG 1078
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      GTAAAGGGATATGCCGCAGTTCAGAGCTTATTGAACTTGGATTAAAGCACAAGCTTGTCA 1138
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      AAAAGTTGGGTGGTGCATTTTATTCTTTCAACGAAGAGTCATATCGTGGTAAAGATGCCC 1198
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      TTAAATCTTACCTCAACGAAAATGAAAGTATCGCAAAAGAACTGGAGACGAATTTAAGGA 1258
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      AATTGATGGAAACTCAAGCACCTAAAAAGCAGGAGGATGAAGGTGATTTCCTGAGTGATC 1318
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      TGCCTGAAGAGAGTCTCGCCACTGAAACATCCTCCGAGGAGGAACTGGCAGCTGTAATAG 1378
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      AAGCTTAATCAGTGATGCTTAATCAGTGATGATAGATCAACAAGAAGGAATATGCGCTGA 1438
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      GCAGTTATTCCACTGAACCATACATATTTTGGTTCTTGGAGATGTCATTTTGGCTGCACC 1498
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      GGGCATATAGAATGTGTGGAATTCGTATTTGAACATCCTTCAGTTGTCAAATGCCTGGAG 1558
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      CGAAGTGAGGTAGAGCCGGGGAAGGACCGGGGGGCTTACGTATGGACTTGTATGGTGGCT 1618
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      ATTTAGACATTGAAAGGGTTATTAGTAGAATGTAACCATGTATATATGTCGCATATCTGG 1678
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      GATTCCTCGTCGGTTCTGGCTTGAGATACACTTACTAAATGCTTCTGATATTTGATTATT 1738
consensus_9173#2      ------------------------------------------------------------
consensus_9173#1      ------------------------------------------------------------
                                                                                  

consensus_9173#0      CCGGTTCCATTCAAAAAAAAAAAAAAAAAAA 1769
consensus_9173#2      -------------------------------
consensus_9173#1      -------------------------------
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)