These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1118 fasta sequence [AAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCTCTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGTCGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACTGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACAACATTCAATTATGTCAGGTGGCAGAACGAGATGCCGCGATTGCTAGGCTGCAGCAAAGTCGTATTCTGCTTGCTACAAGATTGGCTGAACATAGGTGGAAGAAGCATGAAGTTATTGAGGAGGCCTTAGCTTTTGTTGATGATGCGCTTGACAAGAGTCGATTTGTCTCACCAGAAGATGTCCGTGGGACGCATACACACAGCCAATCAGTAGAGAACCAGTGCCCCAAGATACATGATTCAAACTTCTTGGTGCGTTTTTTATCCTGTACATTAGCTATAGCTAAGAATTCTTTAAGATTTGAGAGGATTGGTGGTGCACTCGGTAATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTGGTAAACAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTGTAAAGAACACTAAAGAAAAGCATCTGGTCGTATTGTTAGCTAGAGGATGAGGAAATCATCATTGTTTGATGTATAGA-TAAGTTTTGTTCTGTTCACATTTCTTGAAAGTTTTGTTAGGACACTAATCATTTCACTCCCTTGGATGGGCTGGTCTACAGCATATCTTTGATAGGAAGTTGTACCACATGAGTTGTAAATGGTTTTAGATTGGCAATAGATGAACTGGCAGGGCTTGTAAGCTTGTTTCTTTTTCTGCAGCTGAACGACAACCACCATTTATGGACAACAG] [+] EMBL AK108056 [AAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCTCTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGTCGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACTGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACAACATTCAATTATGTCAGGTGGCAGAACGAGATGCCGCGATTGCTAGGCTGCAGCAAAGTCGTATTCTGCTTGCTACAAGATTGGCTGAACATAGGTGGAAGAAGCATGAAGTTATTGAGGAGGCCTTAGCTTTTGTTGATGATGCGCTTGACAAGAGTCGATTTGTCTCACCAGAAGATGTCCGTGGGACGCATACACACAGCCAATCAGTAGAGAACCAGTGCCCCAAGATACATGATTCAAACTTCTTGGTGCGTTTTTTATCCTGTACATTAGCTATAGCTAAGAATTCTTTAAGATTTGAGAGGATTGGTGGTGCACTCGGTAATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTGGTAAACAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTGTAAAGAACACTAAAGAAAAGCATCTGGTCGTATTGTTAGCTAGAGGATGAGGAAATCATCATTGTTTGATGTATAGA TAAGTTTTG ] [+] EMBL AU166761 [ TGCCCAGGTGTGCGCGGCTCTCTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGTCGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACTGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACAACATTCAATTATGTCAGGTGGCAGAACGAGATGCCGCGATTGCTAGGCTGCAGCAAAGTCGTATTCTGCTTGCTACAA ] [+] EMBL CF325858 [ gGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTTTTTTTTGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACAACATTCAATTATGTCAGGTGGCAGAACGAGATGCCGCGATTGCTAGGCTGCAGCAAAGTCGTATTCTGCTTGCTACAAGATTGGCTGAACATAGGTGGAAGAAGCATGAAGCTATTGAGGAGGCCTTAGCTTTTGTTGATGATGCGCTTGACAAGAGTCGATTTGTCTCACCAGAAGATGTCCGTGGGACGCATACACACAGCCAATCA ] [+] EMBL CA766614 [ GCATACACACAGCCAATCAGTAGAGAACC GTGCCCCAAGATACATGATTCAAACTTCTTGGTGCGTTTTTTATCCTGTACATTAGCTATAGCTAAGAATTCTTTAAGATTTGAGAGGATTGGTGGCGCACTCGGTAATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTGGTAAACAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTGTAAAGAACACTAAAGAAAAGCATCTGGTCGTATTGTTAGCTAGAGGATGAGGAAATCATCATTGTTTGATGTATAGATTAAGTTTTGTTCTGTTCACATTTCTTGAAAGTTTTGTTAGGACACTAATCATTTCACTCCCTTGGATGGGCTGGTCTACAGCATATCTTTGATAGGAAGTTGTACCACATGAGTTGTAAATGGTTTTAGATTGGCAATAGATGAACTGGCAGGGCTTGTAAGCTTGTTTCTTTTTCTGCAGCTGAACGACAACCACCATTTATGGACAACAG] [+] EMBL AU166762 [ GCTAAGAATTCTTTAAGATTTGAGAGGATTGGTGGTGCACTCGGTAATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTGGTAAACAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTGTAAAGAACACTAAAGAAAAGCATCTGGTCGTATTGTTAGCTAGAGGATGAGGAAATCATCATTGTTTGATGTATAGA TAAGTTTTGTTCTGTTCACATTTCTTGAAAGTTTTGTTAGGACACTAATCATTTCACTCCCTTGGATTGGCTGGTCTACAGCATATCTTTGATAGGAAGTTGTACCACATGAGTTGTAAATGGTTTTAGATTGGCAATAGATGAACTGGCAGGGCTTGTAAGCTTGTTTCTTTTTCTGCAGCTGAACGACAAaaaaa ] consensusID : consensus_9174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [ACTTCCCATTTTATATACCCACCCTCTCTCACGACAACATCATCACTTCATTATCACATGACAGACCAACATATAATGATGATTAAGAAAAAAAATAAAATTGTTAACAGAATACGGAAGGAAAAAAAATAAAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCTCTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGTCGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACCGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACGTCAGTATCCTCCTCTCCTCCTTAATTCTTGATTTTTTGTTTACTTTATACAAGAACCATCTCCACTTGATGATACTACAAATGTAGGGAAGAGCTTCTGTTACTTCGTGGCCTCGGATTGCCATGATAATTAATTGATGAATTTCTGAGCTAACCAATCCGCGCTGATTCCACCATCCAAATCGATGAATCGAGATTACTTTGGTACAATTGGTA] [-] EMBL AK109247 [ACTTCCCATTTTATATACCCACCCTCTCTCACGACAACATCATCACTTCATTATCACATGACAGACCAACATATAATGATGATTAAGAAAAAAAATAAAATTGTTAACAGAATACGGAAGGAAAAAAAATAAAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCTCTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGTCGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACCGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACGTCAGTATCCTCCTCTCCTCCTTAATTCTTGATTTTTTGTTTACTTTATACAAGAACCATCTCCACTTGATGATACTACAAATGTAGGGAAGAGCTTCTGTTACTTCGTGGCCTCGGATTGCCATGATAATTAATTGATGAATTTCTGAGCTAACCAATCCGCGCTGATTCCACCATCCAAATCGATGAATCGAGATTACTTTGGTACAATTGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9174#0 ------------------------------------------------------------ consensus_9174#1 ACTTCCCATTTTATATACCCACCCTCTCTCACGACAACATCATCACTTCATTATCACATG 60 consensus_9174#0 ------------------------------------------------------------ consensus_9174#1 ACAGACCAACATATAATGATGATTAAGAAAAAAAATAAAATTGTTAACAGAATACGGAAG 120 consensus_9174#0 -----------AAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCT 49 consensus_9174#1 GAAAAAAAATAAAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCT 180 ************************************************* consensus_9174#0 CTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGT 109 consensus_9174#1 CTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGT 240 ************************************************************ consensus_9174#0 CGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCA 169 consensus_9174#1 CGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCA 300 ************************************************************ consensus_9174#0 TCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCG 229 consensus_9174#1 TCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCG 360 ************************************************************ consensus_9174#0 TGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACTGCGGCCTGGAGCAGGAGG 289 consensus_9174#1 TGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACCGCGGCCTGGAGCAGGAGG 420 ***************************************** ****************** consensus_9174#0 CGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCG 349 consensus_9174#1 CGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCG 480 ************************************************************ consensus_9174#0 AGGACCTCGAGGGCCACCTCCATTTCCTCCACAACATTCAATTATGTCAGGTGGCAGAAC 409 consensus_9174#1 AGGACCTCGAGGGCCACCTCCATTTCCTCCACGTCAGTATCCTCCTCTCCTCCTTAATTC 540 ******************************** ** * * * * consensus_9174#0 GAGATGCCGCGATTGCTAGGCTGCAGCAAAGTCGTATTCTGCTTGCTACAAGATTGGCTG 469 consensus_9174#1 TTGATTTTTTGTTTACT---TTATACAAGAACCAT-CTCCACTTG--ATGATACT----- 589 *** * ** ** * * * * * * ** **** * * * * consensus_9174#0 AACATAGGTGGAAGAAGCATGAAGTTATTGAGGAGGCCTTAGCTTTTGTTGATGATGCGC 529 consensus_9174#1 -ACAAATGTAGGGAAGAGCTTCTGTTACTTCGT-GGCCTCGGATTGCCATGATAAT-TAA 646 *** * ** * * * **** * * ***** * ** **** ** consensus_9174#0 TTGACAAGAGTCGATTTGTCTCACCAGAAGATGTCCGTGGGACGCATACACACAGCCAAT 589 consensus_9174#1 TTGATGAATTTC---TGAGCTAACCA----ATCCGCGCTGATTCCACCATCCAAATCGAT 699 **** * ** * ** **** ** ** * ** * * * ** consensus_9174#0 CAGTAGAGAACCAGTGCCCCAAGATACATGATTCAAACTTCTTGGTGCGTTTTTTATCCT 649 consensus_9174#1 GAATCGAG----ATTACTTTGGTACAATTGGTA--------------------------- 728 * * *** * * * * * ** * consensus_9174#0 GTACATTAGCTATAGCTAAGAATTCTTTAAGATTTGAGAGGATTGGTGGTGCACTCGGTA 709 consensus_9174#1 ------------------------------------------------------------ consensus_9174#0 ATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTG 769 consensus_9174#1 ------------------------------------------------------------ consensus_9174#0 GTAAACAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTG 829 consensus_9174#1 ------------------------------------------------------------ consensus_9174#0 TAAAGAACACTAAAGAAAAGCATCTGGTCGTATTGTTAGCTAGAGGATGAGGAAATCATC 889 consensus_9174#1 ------------------------------------------------------------ consensus_9174#0 ATTGTTTGATGTATAGATAAGTTTTGTTCTGTTCACATTTCTTGAAAGTTTTGTTAGGAC 949 consensus_9174#1 ------------------------------------------------------------ consensus_9174#0 ACTAATCATTTCACTCCCTTGGATGGGCTGGTCTACAGCATATCTTTGATAGGAAGTTGT 1009 consensus_9174#1 ------------------------------------------------------------ consensus_9174#0 ACCACATGAGTTGTAAATGGTTTTAGATTGGCAATAGATGAACTGGCAGGGCTTGTAAGC 1069 consensus_9174#1 ------------------------------------------------------------ consensus_9174#0 TTGTTTCTTTTTCTGCAGCTGAACGACAACCACCATTTATGGACAACAG 1118 consensus_9174#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||