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Oryza sativa
cluster # 918 cluster # 918       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_918#0 length = 1185 sequences # 1  
consensus_918#1 length = 236 sequences # 1  

consensusID : consensus_918#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1185
fasta sequence
                              [TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGGCACCGTCAACCGCTTCCTCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCCCGACGCCGCCGGCGTGGCGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGATGTTCTTTCCGGGGGCAGCTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATACTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTGCCGTCGCTTCGCCTCGGCCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCCCGAGCACGGTTTCCCGGCGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGCCGGCGCCGGTGGCGCCCTCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGCGGGCGGCAACGTCGCCCACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCATCGCGCTGCAGCCGTTCTTCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGACGCGCCGTTCGGGTCGCCGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGGCGCCACGCGGGACCACGAGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCGGCGCCGCGCGTTCCCGCCGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAGGCAGCGCGACTACGCCGACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGCCGAGTTCCCCGACGCCATCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAGGCTGCTCACCGAAGTCACCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCTTGAACTTGCAGTAGCCGACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTCACACAATTTCTCATTTGATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAGCT]

[+] EMBL AK109579             [TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGGCACCGTCAACCGCTTCCTCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCCCGACGCCGCCGGCGTGGCGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGATGTTCTTTCCGGGGGCAGCTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATACTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTGCCGTCGCTTCGCCTCGGCCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCCCGAGCACGGTTTCCCGGCGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGCCGGCGCCGGTGGCGCCCTCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGCGGGCGGCAACGTCGCCCACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCATCGCGCTGCAGCCGTTCTTCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGACGCGCCGTTCGGGTCGCCGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGGCGCCACGCGGGACCACGAGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCGGCGCCGCGCGTTCCCGCCGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAGGCAGCGCGACTACGCCGACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGCCGAGTTCCCCGACGCCATCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAGGCTGCTCACCGAAGTCACCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCTTGAACTTGCAGTAGCCGACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTCACACAATTTCTCATTTGATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAGCT]


>consensus_918#0 TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGG CGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCGCGCGCGGCTGCTCGTGG GCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGGCACCGTCAACCGCTTCC TCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCCCGACGCCGCCGGCGTGG CGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGATGTTCTTTCCGGGGGCAG CTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATACTTCCACGGCGGCGGCT TCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTGCCGTCGCTTCGCCTCGG CCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCCCGAGCACGGTTTCCCGG CGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGCCGGCGCCGGTGGCGCCC TCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGCGGGCGGCAACGTCGCCC ACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCATCGCGCTGCAGCCGTTCT TCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGACGCGCCGTTCGGGTCGC CGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGGCGCCACGCGGGACCACG AGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCGGCGCCGCGCGTTCCCGC CGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAGGCAGCGCGACTACGCCG ACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGCCGAGTTCCCCGACGCCA TCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAGGCTGCTCACCGAAGTCA CCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCTTGAACTTGCAGTAGCCG ACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTCACACAATTTCTCATTTG ATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAGCT



consensusID : consensus_918#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence
                              [CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCACCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG]

[+] EMBL CA758595             [CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCACCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG]


>consensus_918#1 CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCA CCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAG AGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCG CGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_918#0      ------------------------------------------------------------
consensus_918#1      CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCA 60
                                                                                 

consensus_918#0      -----------------TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAG 43
consensus_918#1      CCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAG 120
                                      *******************************************

consensus_918#0      AGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCG 103
consensus_918#1      AGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCG 180
                     ************************************************* ** *******

consensus_918#0      CGCGCGGCTGCTCGTGGGCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGG 163
consensus_918#1      CGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG---- 236
                     ************************ * ******** ** ** **   *  * *  *    

consensus_918#0      CACCGTCAACCGCTTCCTCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCC 223
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGACGCCGCCGGCGTGGCGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGAT 283
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      GTTCTTTCCGGGGGCAGCTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATA 343
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTG 403
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CCGTCGCTTCGCCTCGGCCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCC 463
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGAGCACGGTTTCCCGGCGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGC 523
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGGCGCCGGTGGCGCCCTCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGC 583
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      GGGCGGCAACGTCGCCCACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCAT 643
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGCGCTGCAGCCGTTCTTCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGA 703
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGCGCCGTTCGGGTCGCCGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGG 763
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGCCACGCGGGACCACGAGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCG 823
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      GCGCCGCGCGTTCCCGCCGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAG 883
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      GCAGCGCGACTACGCCGACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGC 943
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGAGTTCCCCGACGCCATCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAG 1003
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      GCTGCTCACCGAAGTCACCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCT 1063
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      TGAACTTGCAGTAGCCGACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTC 1123
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      ACACAATTTCTCATTTGATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAG 1183
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CT 1185
consensus_918#1      --
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)