These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1180 fasta sequence [CAGCCAGCCAAACAGTAGCAACATGAGTACTTCAGCTCGCCGCCTCCTCCTCCTCGCCGGCGCCGCTGCCGCCATCGCACTCCTGCTCTCGGCCACTGCCCCGGTGGCCGGAGCCGAGGACGACGGCTACAGCTACATCCCTGGCTCACCCAGGGGGCCGCAGAACTGGGGCAGCCTGAAGCCGGAATGGGCCACCTGCAGCAGCGGCAAGATGCAGTCGCCGATCAACCTCGGCCTCCTCGACCTCACCTTGGCTCCCGGCCTCGGCAACCTCAACTACACCTACCAGAACGCCAACGCCTCCGTCGTCAACCGTGGCCACGACATCATGGTCAGGTTTGACGGCGACGCCGGTAGCCTAAAGATAAATGGCACGGCGTACCAGCTCCGGCAGATGCACTGGCACACGCCGTCGGAGCACACCATCGATGGCCGGAGGTACGACATGGAGCTGCACATGGTGCACCTCAACGCCCAGAACCAGGCCGCCGTCATTGGCATCCTCTACACCATCGGCACCCGGGACGAGTTTCTGCAAAAGCTAGAGCCTTATATAATTGAGATATCAAAGCAAGAAGGCAAAGAGAGAGTGATCATTGGTGGGGGCGGATCCAAATGTAGCCAAGGGACAGGATACCGTGTACTACCGCTACATGGGCTCCTTTACCACACCACCTTGCACTGAGGGAGTCATCTGGACCGTTGTCAGGAAGGTGCGCACCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACAACGCGAGACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTCTCATCAACAACTGAACAGCATGCTTGACATACACAGCTGATTTACAACGCATCGCCTGACACACGCATGGAGAATCAGCAAACATATGTGTACTAATAAATATATAGTATTACTCATGTTTGTGTAATCTTATCCTAATGGTGTCGCTTATATATATATATATATATCGTCTTGATCACCTAGCTTCGTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTGCATAGCATAATAATGCATGCATAGATTTTATATGTATCTCTTTCCGGTGCTGCTATGTGTATCTCTATATGATTAAATAAAAATACCAATGTTTTATAAAAAAAAAAAAAAAA] [+] EMBL CF310576 [CAGCCAGCCAAACAGTAGCAACATGAGTACTTCAGCTCGCCGCCTCCTCCTCCTCGCCGGCGCCGCTGCCGCCATCGCACTCCTGCTCTCGGCCACTGCCCCGGTGGCCGGAGCCGAGGACGACGGCTACAGCTACATCCCTGGCTCACCCAGGGGGCCGCAGAACTGGGGCAGCCTGAAGCCGGAATGGGCCACCTGCAGCAGCGGCAAGATGCAGTCGCCGATCAACCTCGGCCTCCTCGACCTCACCTTGGCTCCCGGCCTCGGCAACCTCAACTACACCTACCAGAACGCCAACGCCTCCGTCGTCAACCGTGGCCACGACATCATGGTCAGGTTTGACGGCGACGCCGGTAGCCTAAAGATAAATGGCACGGCGTACCAGCTCCGGCAGATGCACTGGCACACGCCGTCGGAGCACACCATCGATGGCCGGAGGTACGACATGGAGCTGCACATGGTGCACCTCAACGCCCAGAACCAGGCCGCCGTCATTGGCATCCTCTACACCATCGGCACCCGGGACGAGTTTCTGCAAAAGCTAGAGCCTTATATAATTGAGATATCAAAGCAAGAAGGCAAAGAGAGAGTGATCATTGGTGGGGGCGGATCCAAATGTAGCCAAGGGACAGGATACCGTGTACTACCGCTACATGGGCTCCT ] [-] EMBL CF326739 [ GATATCAAAGCAAGAAGGCAAAGAGAGAGTGATCATTGGT GGGGCGGATCCAAATGTAGCCAAGGGACAGGATACCGTGTACTACCGCTACATGGGCTCCTTTACCACACCACCTTGCACTGAGGGAGTCATCTGGACCGTTGTCAGGAAGGTGCGCACCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACAACGCGAGACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTCTCATCAACAACTGAACAGCATGCTTGACATACACAGCTGATTTACAACGCATCGCCTGACACACGCATGGAGAATCAGCAAACATATGTGTACTAATAAATATATAGTATTACTCATGTTTGTGTAATCTTATCCTAATGGTGTCGCTTATATATATATATATATATCGTCTTGATCACCTAGCTTCGTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTGCATAGCATAATAATGCATGCATAGATTTTATATGTATCTCTTTCCGGTGCTGCTATGTGTATCTCTATATGATTAAATAAAAATACCAATGTTTTATAAAAAAAAAAAAAAAA] [-] EMBL CF310577 [ AGCCAAGGGACAGGATACCGTGTACTACCGCTACATGGGCTCCTTTACCACACCGCCTTGCACTGAGGGAGTCATCTGGACCGTTGTCAGGAAGGTGCGCACCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACAACGCGAGACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTCTCATCAACAACTGAACAGCATGCTTGACATACACAGCTGATTTACAACGCATCGCCTGACACACGCATGGAGAATCAGCAAACATATGTGTACTAATAAATATATAGTATTACTCATGTTTGTGTAATCTTATCCTAATGGTGTCGCTTATATATATATATATATATCGTCTTGATCACCTAGCTTCGTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTGCATAGCATAATAATGCATGCATAGATTTTATATGTATCTCTTTCCGGTGCTGCTATGTGTATCTCTATATGATTAAATAAAAATACCAATGTTTTATAAAAAAAA ] [-] EMBL BI118615 [ CATGGGCTCCTTTACCACACCACCTTGCACTGAGGGAGTCATCTGGACCGTTGTCAGGAAGGTGCGCACCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACAACGCGAGACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTCTGATCAACAACTGAACAGCATGCTTCACATACACAGCTGATTTACAACGCATCGCCTGACACACGCATGGAGAATCAGCAAA ] [+] EMBL BI813406 [ atataTATATATATATATATATATCGTCTTGATCACCTAGCTTCGTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTGCATAGCATAATAATGCATGCATAGATTTTATATGTATCTCTTTCCGGTGCTGCTATGTGTATCTCTATATGATTAAATAAAAATACC ATGTTTTATAAAAAAAA ] consensusID : consensus_9181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [TCTGCAAAGCTGGACTTATATATTGCGATATCAACCAGAAGGTAAAGAAGAGGATGGTTCTTGTGGGCGGATCCAAATGTAGCCAAGGGAAAGGATACGTGTACTATCGCTACATGGGCTCCTTTACCACACCACCTTGCACGGAGGGGGTCATCTGGACCGTTGTCAGGAAGGTGCACACCGTGTCACTGTCCCNAATCACACTTCTCAAGGCAGCTGTGCTCATGGGTAATGAGAACACGCGAGACCCCTCCAGGATGTGAACACAGGGAGATTGACCTGTTCTTTCCTCTTCCTCTGATCAATAACTGAACGACATGCTTGACCTACACAGTTGATTTACAACGTATCGCCTGACACACGCGCATGGAGAATCATCAAACATATATGTACTTATAAATATATAGTATTACTCATGTTTGTGTAAATCTCATCATCATGGTGTCACTTATATATATATATGTGTAAGTCCCTCGTTAGTCTTGATCACCTAGTTTAGTAAAGAGAGGAGCATATATATGTCGTTCAATCATATTTGCATAGCATAATAATGCATGCATAGTTTTTATATGTATCTCTTTCCGGTGCTGCTATGTATCTCTATACGATTAAATANAAATACCATGTTTTATAATTAAAAAAAA] [+] EMBL BQ908858 [TCTGCAAAGCTGGACTTATATATTGCGATATCAACCAGAAGGTAAAGAAGAGGATGGTTCTTGTGGGCGGATCCAAATGTAGCCAAGGGAAAGGATACGTGTACTATCGCTACATGGGCTCCTTTACCACACCACCTTGCACGGAGGGGGTCATCTGGACCGTTGTCAGGAAGGTGCACACCGTGTCACTGTCCCNAATCACACTTCTCAAGGCAGCTGTGCTCATGGGTAATGAGAACACGCGAGACCCCTCCAGGATGTGAACACAGGGAGATTGACCTGTTCTTTCCTCTTCCTCTGATCAATAACTGAACGACATGCTTGACCTACACAGTTGATTTACAACGTATCGCCTGACACACGCGCATGGAGAATCATCAAACATATATGTACTTATAAATATATAGTATTACTCATGTTTGTGTAAATCTCATCATCATGGTGTCACTTATATATATATATGTGTAAGTCCCTCGTTAGTCTTGATCACCTAGTTTAGTAAAGAGAGGAGCATATATATGTCGTTCAATCATATTTGCATAGCATAATAATGCATGCATAGTTTTTATATGTATCTCTTTCCGGTGCTGCTATGTATCTCTATACGATTAAATANAAATACCATGTTTTATAATTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9181#0 CAGCCAGCCAAACAGTAGCAACATGAGTACTTCAGCTCGCCGCCTCCTCCTCCTCGCCGG 60 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 CGCCGCTGCCGCCATCGCACTCCTGCTCTCGGCCACTGCCCCGGTGGCCGGAGCCGAGGA 120 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 CGACGGCTACAGCTACATCCCTGGCTCACCCAGGGGGCCGCAGAACTGGGGCAGCCTGAA 180 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 GCCGGAATGGGCCACCTGCAGCAGCGGCAAGATGCAGTCGCCGATCAACCTCGGCCTCCT 240 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 CGACCTCACCTTGGCTCCCGGCCTCGGCAACCTCAACTACACCTACCAGAACGCCAACGC 300 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 CTCCGTCGTCAACCGTGGCCACGACATCATGGTCAGGTTTGACGGCGACGCCGGTAGCCT 360 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 AAAGATAAATGGCACGGCGTACCAGCTCCGGCAGATGCACTGGCACACGCCGTCGGAGCA 420 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 CACCATCGATGGCCGGAGGTACGACATGGAGCTGCACATGGTGCACCTCAACGCCCAGAA 480 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 CCAGGCCGCCGTCATTGGCATCCTCTACACCATCGGCACCCGGGACGAGTTTCTGCAAAA 540 consensus_9181#1 ---------------------------------------------------TCTGCAAA- 8 ******** consensus_9181#0 GCTAGAGCCTTATATAATTGAGATATCAAAGCAAGAAGGCAAAGAGAGAGTGATCATTGG 600 consensus_9181#1 GCTGGA--CTTATATA-TTGCGATATCAA--CCAGAAGGTAAAGA-AGAG-GATGGTTCT 61 *** ** ******** *** ******** * ****** ***** **** *** ** consensus_9181#0 TGGGGGCGGATCCAAATGTAGCCAAGGGACAGGATACCGTGTACTACCGCTACATGGGCT 660 consensus_9181#1 TGTGGGCGGATCCAAATGTAGCCAAGGGAAAGGATAC-GTGTACTATCGCTACATGGGCT 120 ** ************************** ******* ******** ************* consensus_9181#0 CCTTTACCACACCACCTTGCACTGAGGGAGTCATCTGGACCGTTGTCAGGAAGGTGCGCA 720 consensus_9181#1 CCTTTACCACACCACCTTGCACGGAGGGGGTCATCTGGACCGTTGTCAGGAAGGTGCACA 180 ********************** ***** **************************** ** consensus_9181#0 CCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACA 780 consensus_9181#1 CCGTGTCACTGTCCCNAATCACACTTCTCAAGGCAGCTGTGCTCATGGGTAATGAGAACA 240 *************** ***************************** ****** ******* consensus_9181#0 ACGCGAGACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTC 840 consensus_9181#1 -CGCGAGACCCCTCCAGGATGTGAACA-CAGGGAGATTGACCTGTTCTTTCCTCTTCCTC 298 ************ **** ******* ******************* ******* **** consensus_9181#0 TCATCAACAACTGAACAGCATGCTTGACATACACAGCTGATTTACAACGCATCGCCTGAC 900 consensus_9181#1 TGATCAATAACTGAACGACATGCTTGACCTACACAGTTGATTTACAACGTATCGCCTGAC 358 * ***** ******** ********** ******* ************ ********** consensus_9181#0 ACACGC--ATGGAGAATCAGCAAACATATGTGTACTAATAAATATATAGTATTACTCATG 958 consensus_9181#1 ACACGCGCATGGAGAATCATCAAACATATATGTACTTATAAATATATAGTATTACTCATG 418 ****** *********** ********* ****** *********************** consensus_9181#0 TTTGTGTAA-TCTTATCCTAATGGTGTCGCTTATATATATATATATATA----------T 1007 consensus_9181#1 TTTGTGTAAATCTCATCATCATGGTGTCACTTATATATATATATGTGTAAGTCCCTCGTT 478 ********* *** *** * ******** *************** * ** * consensus_9181#0 CGTCTTGATCACCTAGCTTCGTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTG 1067 consensus_9181#1 AGTCTTGATCACCTAGTTTAGTAAAGAGAGGAGCATATATATGTCGTTCAATCATATTTG 538 *************** ** ********** ******** ********* ** ** consensus_9181#0 CATAGCATAATAATGCATGCATAGATTTTATATGTATCTCTTTCCGGTGCTGCTATGTGT 1127 consensus_9181#1 CATAGCATAATAATGCATGCATAGTTTTTATATGTATCTCTTTCCGGTGCTGCTATG--T 596 ************************ ******************************** * consensus_9181#0 ATCTCTATATGATTAAATAAAAATACCAATGTTTTATAAAAAAAAAAAAAAAA 1180 consensus_9181#1 ATCTCTATACGATTAAATANAAATACCA-TGTTTTATAATTAAAAAAAA---- 644 ********* ********* ******** ********** ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||