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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1339 fasta sequence
[ACCCCCAACCCACGCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTT-GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGTTTGGCTGCTGATGAAAATCCATTCGGTGTTGT-CCTGGGGGGAGTTCTGTACGAGCTACATCTTCTGTTTCCCTTACACTTTTTAAATGGTTTATTATGTGGTCCTGACTAAACCTACTACTGTGCATAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTTGGCCTCTCAAATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTATCATGTCATACTTGTCAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAAGGAGAATTATCATGTTCATCATGGCCGGTTAACAAGCTTGTTTTCACTACGACTTGATCTCATCTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGATGGCGATTACTTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGGTACCAAAGACTCTACTGGTTGCTTCGTGTTAGTCCCAGCACCAGACAACATTCAGCCAAAACTGTCGGAGTAGTTGCTGCATACTACCATACTATTTTTTTTGGTCGCAACTATGCATAAGAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAGTGATTTCAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK066308 [ACCCCCAACCCACGCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTT GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGTTTGGCTGCTGATGAAAATCCATTCGGTGTTGT CCTGGGGGGAGTTCTGTACGAGCTACATCTTCTGTTTCCCTTACACTTTTTAAATGGTTTATTATGTGGTCCTGACTAAACCTACTACTGTGCATAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTTGGCCTCTCAAATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTATCATGTCATACTTGTCAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAAGGAGAATTATCATGTTCATCATGGCCGGTTAACAAGCTTGTTTTCACTACGACTTGATCTCATCTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGATGGCGATTACTTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGGTACCAAAGACTCTACTGGTTGCTTCGTGTTAGTCCCAGCACCAGACAACATTCAGCCAAAACTGTCGGAGTAGTTGCTGCATACTACCATACTATTTTTTTTGGTCGCAACTATGCATAAGAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAGTGA ]
[+] EMBL CA754249 [ GCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTT GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGGTTGGCTGCTGATGAAAATCCATTCGGGGT ]
[+] EMBL CA756326 [ CCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCANATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAANAGTANATCTNAGGCAAATGATGATNAAAAGAAGCAGCANAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATNAAGGCATTTTCCATTACATTCTTT GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATGGGTTTGGCTGCTGATGAANATCCATTCGGTGTTGTCCCTGGGGG ]
[+] EMBL C29100 [ ACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTTGGGAGAGTCGGGTGATAAGAGTCAAAT ]
[+] EMBL CF327064 [ ACTACCATACTA TTTTTTTGGTCGCAACTATGCATAAGAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAGTGGTTTCAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[TTCTTTGCCATTCAGTTAACCTTCAGCTACTAATATTTGGTCTTTTAGTGAGTGACNTTTAGTAATTGAATAACTTACCATGCAGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGTCAGCAAACTTTATCCATGCCTTATGTTATAGTGGACTGTAGTTCAAGTAACCTATTGCTAAGTTTTGCCTAATTTTCAGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATAGCTACTATTGGTT]
[+] EMBL CA305785 [TTCTTTGCCATTCAGTTAACCTTCAGCTACTAATATTTGGTCTTTTAGTGAGTGACNTTTAGTAATTGAATAACTTACCATGCAGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGTCAGCAAACTTTATCCATGCCTTATGTTATAGTGGACTGTAGTTCAAGTAACCTATTGCTAAGTTTTGCCTAATTTTCAGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATAGCTACTATTGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9184#0 ACCCCCAACCCACGCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGG 60
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 CGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTC 120
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 ACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCC 180
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 GCGATTCTGGCCATGCGCTATCCCCGGAAGCTT--GTTCTTGCTGGTTGTCTCACCTCAT 238
consensus_9184#1 ----------TTCTTTGCCATTCAGTTAACCTTCAGCTACTAATATTTGG-TCTTTTAGT 49
* ** ** * ** *** * * * * *** ** * *
consensus_9184#0 TAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCAC 298
consensus_9184#1 GAGTGACNTTTAGTAATTGAATAACTTACCATGCAGAGATTCAGAAGAATTGGCTGAAGT 109
* * * * * * ** * ** * ** * *** * *
consensus_9184#0 GCAAA-TGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTG 357
consensus_9184#1 GGAAGCTGAGCTGGTCA-GCAAACTTTAT-CCATGCCTTATGTT----ATAGTGG-ACTG 162
* ** ** ** *** * * * * * * ** * ** **** ** ** * **
consensus_9184#0 TGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTG 417
consensus_9184#1 TAG------TTCAAGTAACCT----ATTGCTAAGTTTTGCCTAATTTTCA---------G 203
* * ***** ** * *** *** *** ** * * * *
consensus_9184#0 GATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGAT 477
consensus_9184#1 GATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGAT 263
************************************************************
consensus_9184#0 AAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCA 537
consensus_9184#1 AAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCA 323
************************************************************
consensus_9184#0 TTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGTTTG 597
consensus_9184#1 TTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATAGCTACTATTGGTT-- 381
******************************************** *************
consensus_9184#0 GCTGCTGATGAAAATCCATTCGGTGTTGTCCTGGGGGGAGTTCTGTACGAGCTACATCTT 657
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 CTGTTTCCCTTACACTTTTTAAATGGTTTATTATGTGGTCCTGACTAAACCTACTACTGT 717
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 GCATAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTTGGCCTC 777
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 TCAAATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTAT 837
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 CATGTCATACTTGTCAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAA 897
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 GGAGAATTATCATGTTCATCATGGCCGGTTAACAAGCTTGTTTTCACTACGACTTGATCT 957
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 CATCTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGATGGCGAT 1017
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 TACTTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGG 1077
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 TACCAAAGACTCTACTGGTTGCTTCGTGTTAGTCCCAGCACCAGACAACATTCAGCCAAA 1137
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 ACTGTCGGAGTAGTTGCTGCATACTACCATACTATTTTTTTTGGTCGCAACTATGCATAA 1197
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 GAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAG 1257
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 TGATTTCAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1317
consensus_9184#1 ------------------------------------------------------------
consensus_9184#0 AAAAAAAAAAAAAAAAAAAAAA 1339
consensus_9184#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||