These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1339 fasta sequence [ACCCCCAACCCACGCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTT-GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGTTTGGCTGCTGATGAAAATCCATTCGGTGTTGT-CCTGGGGGGAGTTCTGTACGAGCTACATCTTCTGTTTCCCTTACACTTTTTAAATGGTTTATTATGTGGTCCTGACTAAACCTACTACTGTGCATAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTTGGCCTCTCAAATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTATCATGTCATACTTGTCAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAAGGAGAATTATCATGTTCATCATGGCCGGTTAACAAGCTTGTTTTCACTACGACTTGATCTCATCTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGATGGCGATTACTTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGGTACCAAAGACTCTACTGGTTGCTTCGTGTTAGTCCCAGCACCAGACAACATTCAGCCAAAACTGTCGGAGTAGTTGCTGCATACTACCATACTATTTTTTTTGGTCGCAACTATGCATAAGAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAGTGATTTCAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK066308 [ACCCCCAACCCACGCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTT GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGTTTGGCTGCTGATGAAAATCCATTCGGTGTTGT CCTGGGGGGAGTTCTGTACGAGCTACATCTTCTGTTTCCCTTACACTTTTTAAATGGTTTATTATGTGGTCCTGACTAAACCTACTACTGTGCATAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTTGGCCTCTCAAATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTATCATGTCATACTTGTCAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAAGGAGAATTATCATGTTCATCATGGCCGGTTAACAAGCTTGTTTTCACTACGACTTGATCTCATCTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGATGGCGATTACTTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGGTACCAAAGACTCTACTGGTTGCTTCGTGTTAGTCCCAGCACCAGACAACATTCAGCCAAAACTGTCGGAGTAGTTGCTGCATACTACCATACTATTTTTTTTGGTCGCAACTATGCATAAGAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAGTGA ] [+] EMBL CA754249 [ GCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTT GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGGTTGGCTGCTGATGAAAATCCATTCGGGGT ] [+] EMBL CA756326 [ CCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCANATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAANAGTANATCTNAGGCAAATGATGATNAAAAGAAGCAGCANAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATNAAGGCATTTTCCATTACATTCTTT GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATGGGTTTGGCTGCTGATGAANATCCATTCGGTGTTGTCCCTGGGGG ] [+] EMBL C29100 [ ACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTTGGGAGAGTCGGGTGATAAGAGTCAAAT ] [+] EMBL CF327064 [ ACTACCATACTA TTTTTTTGGTCGCAACTATGCATAAGAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAGTGGTTTCAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [TTCTTTGCCATTCAGTTAACCTTCAGCTACTAATATTTGGTCTTTTAGTGAGTGACNTTTAGTAATTGAATAACTTACCATGCAGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGTCAGCAAACTTTATCCATGCCTTATGTTATAGTGGACTGTAGTTCAAGTAACCTATTGCTAAGTTTTGCCTAATTTTCAGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATAGCTACTATTGGTT] [+] EMBL CA305785 [TTCTTTGCCATTCAGTTAACCTTCAGCTACTAATATTTGGTCTTTTAGTGAGTGACNTTTAGTAATTGAATAACTTACCATGCAGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGTCAGCAAACTTTATCCATGCCTTATGTTATAGTGGACTGTAGTTCAAGTAACCTATTGCTAAGTTTTGCCTAATTTTCAGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATAGCTACTATTGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9184#0 ACCCCCAACCCACGCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGG 60 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 CGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTC 120 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 ACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCC 180 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 GCGATTCTGGCCATGCGCTATCCCCGGAAGCTT--GTTCTTGCTGGTTGTCTCACCTCAT 238 consensus_9184#1 ----------TTCTTTGCCATTCAGTTAACCTTCAGCTACTAATATTTGG-TCTTTTAGT 49 * ** ** * ** *** * * * * *** ** * * consensus_9184#0 TAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCAC 298 consensus_9184#1 GAGTGACNTTTAGTAATTGAATAACTTACCATGCAGAGATTCAGAAGAATTGGCTGAAGT 109 * * * * * * ** * ** * ** * *** * * consensus_9184#0 GCAAA-TGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTG 357 consensus_9184#1 GGAAGCTGAGCTGGTCA-GCAAACTTTAT-CCATGCCTTATGTT----ATAGTGG-ACTG 162 * ** ** ** *** * * * * * * ** * ** **** ** ** * ** consensus_9184#0 TGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTG 417 consensus_9184#1 TAG------TTCAAGTAACCT----ATTGCTAAGTTTTGCCTAATTTTCA---------G 203 * * ***** ** * *** *** *** ** * * * * consensus_9184#0 GATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGAT 477 consensus_9184#1 GATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGAT 263 ************************************************************ consensus_9184#0 AAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCA 537 consensus_9184#1 AAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCA 323 ************************************************************ consensus_9184#0 TTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGTTTG 597 consensus_9184#1 TTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATAGCTACTATTGGTT-- 381 ******************************************** ************* consensus_9184#0 GCTGCTGATGAAAATCCATTCGGTGTTGTCCTGGGGGGAGTTCTGTACGAGCTACATCTT 657 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 CTGTTTCCCTTACACTTTTTAAATGGTTTATTATGTGGTCCTGACTAAACCTACTACTGT 717 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 GCATAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTTGGCCTC 777 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TCAAATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTAT 837 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 CATGTCATACTTGTCAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAA 897 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 GGAGAATTATCATGTTCATCATGGCCGGTTAACAAGCTTGTTTTCACTACGACTTGATCT 957 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 CATCTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGATGGCGAT 1017 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TACTTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGG 1077 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TACCAAAGACTCTACTGGTTGCTTCGTGTTAGTCCCAGCACCAGACAACATTCAGCCAAA 1137 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 ACTGTCGGAGTAGTTGCTGCATACTACCATACTATTTTTTTTGGTCGCAACTATGCATAA 1197 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 GAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAG 1257 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TGATTTCAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1317 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 AAAAAAAAAAAAAAAAAAAAAA 1339 consensus_9184#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||