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Oryza sativa
cluster # 9184 cluster # 9184       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9184#0 length = 1339 sequences # 5  
consensus_9184#1 length = 381 sequences # 1  

consensusID : consensus_9184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1339
fasta sequence
                              [ACCCCCAACCCACGCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTT-GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGTTTGGCTGCTGATGAAAATCCATTCGGTGTTGT-CCTGGGGGGAGTTCTGTACGAGCTACATCTTCTGTTTCCCTTACACTTTTTAAATGGTTTATTATGTGGTCCTGACTAAACCTACTACTGTGCATAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTTGGCCTCTCAAATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTATCATGTCATACTTGTCAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAAGGAGAATTATCATGTTCATCATGGCCGGTTAACAAGCTTGTTTTCACTACGACTTGATCTCATCTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGATGGCGATTACTTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGGTACCAAAGACTCTACTGGTTGCTTCGTGTTAGTCCCAGCACCAGACAACATTCAGCCAAAACTGTCGGAGTAGTTGCTGCATACTACCATACTATTTTTTTTGGTCGCAACTATGCATAAGAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAGTGATTTCAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK066308             [ACCCCCAACCCACGCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTT GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGTTTGGCTGCTGATGAAAATCCATTCGGTGTTGT CCTGGGGGGAGTTCTGTACGAGCTACATCTTCTGTTTCCCTTACACTTTTTAAATGGTTTATTATGTGGTCCTGACTAAACCTACTACTGTGCATAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTTGGCCTCTCAAATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTATCATGTCATACTTGTCAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAAGGAGAATTATCATGTTCATCATGGCCGGTTAACAAGCTTGTTTTCACTACGACTTGATCTCATCTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGATGGCGATTACTTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGGTACCAAAGACTCTACTGGTTGCTTCGTGTTAGTCCCAGCACCAGACAACATTCAGCCAAAACTGTCGGAGTAGTTGCTGCATACTACCATACTATTTTTTTTGGTCGCAACTATGCATAAGAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAGTGA                                                                               ]
[+] EMBL CA754249             [             GCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTT GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGGTTGGCTGCTGATGAAAATCCATTCGGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA756326             [                             CCCTCCCCGACCCCGCCGAGATCGGAGCAGGCGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTCACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGCANATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAANAGTANATCTNAGGCAAATGATGATNAAAAGAAGCAGCANAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATNAAGGCATTTTCCATTACATTCTTT GGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATGGGTTTGGCTGCTGATGAANATCCATTCGGTGTTGTCCCTGGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C29100               [                                                                                                                                                                                                                                                                          ACTTGGTTGGGTTGCGCCAAATCTGATATCACGCAAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTTGGGAGAGTCGGGTGATAAGAGTCAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF327064             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACTACCATACTA TTTTTTTGGTCGCAACTATGCATAAGAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAGTGGTTTCAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9184#0 ACCCCCAACCCACGCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGG CGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTC ACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCC GCGATTCTGGCCATGCGCTATCCCCGGAAGCTTGTTCTTGCTGGTTGTCTCACCTCATTA ACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCACGC AAATGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTGTGG GAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGAT GCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAA AAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTT TCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGTTTGGCT GCTGATGAAAATCCATTCGGTGTTGTCCTGGGGGGAGTTCTGTACGAGCTACATCTTCTG TTTCCCTTACACTTTTTAAATGGTTTATTATGTGGTCCTGACTAAACCTACTACTGTGCA TAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTTGGCCTCTCA AATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTATCAT GTCATACTTGTCAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAAGGA GAATTATCATGTTCATCATGGCCGGTTAACAAGCTTGTTTTCACTACGACTTGATCTCAT CTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGATGGCGATTAC TTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGGTAC CAAAGACTCTACTGGTTGCTTCGTGTTAGTCCCAGCACCAGACAACATTCAGCCAAAACT GTCGGAGTAGTTGCTGCATACTACCATACTATTTTTTTTGGTCGCAACTATGCATAAGAA CTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAGTGA TTTCAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAA



consensusID : consensus_9184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence
                              [TTCTTTGCCATTCAGTTAACCTTCAGCTACTAATATTTGGTCTTTTAGTGAGTGACNTTTAGTAATTGAATAACTTACCATGCAGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGTCAGCAAACTTTATCCATGCCTTATGTTATAGTGGACTGTAGTTCAAGTAACCTATTGCTAAGTTTTGCCTAATTTTCAGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATAGCTACTATTGGTT]

[+] EMBL CA305785             [TTCTTTGCCATTCAGTTAACCTTCAGCTACTAATATTTGGTCTTTTAGTGAGTGACNTTTAGTAATTGAATAACTTACCATGCAGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTGGTCAGCAAACTTTATCCATGCCTTATGTTATAGTGGACTGTAGTTCAAGTAACCTATTGCTAAGTTTTGCCTAATTTTCAGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATAGCTACTATTGGTT]


>consensus_9184#1 TTCTTTGCCATTCAGTTAACCTTCAGCTACTAATATTTGGTCTTTTAGTGAGTGACNTTT AGTAATTGAATAACTTACCATGCAGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGC TGGTCAGCAAACTTTATCCATGCCTTATGTTATAGTGGACTGTAGTTCAAGTAACCTATT GCTAAGTTTTGCCTAATTTTCAGGATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAA GTAAATCTAAGGCAAATGATGATAAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCT TCTCACCAATCTTTATAAAGGCATTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGA GTCAAATAGCTACTATTGGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9184#0      ACCCCCAACCCACGCCTCCCTCGCATCGCCCCTCCCCGACCCCGCCGAGATCGGAGCAGG 60
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      CGCCGCCTCCCTCCTCCCGCCTCCTCCTCCGCCATGGCGCCGTCTCTGCTCGGGGGGTTC 120
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      ACCAAGTCGCTGGCCATGACGGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCCGCC 180
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      GCGATTCTGGCCATGCGCTATCCCCGGAAGCTT--GTTCTTGCTGGTTGTCTCACCTCAT 238
consensus_9184#1      ----------TTCTTTGCCATTCAGTTAACCTTCAGCTACTAATATTTGG-TCTTTTAGT 49
                                   *  ** ** *    ** ***  * *  *  *  ***  **   *  *

consensus_9184#0      TAACAGTGATGACGGCTCTATCAGTTTCACTTGGTTGGGTTGCGCCAAATCTGATATCAC 298
consensus_9184#1      GAGTGACNTTTAGTAATTGAATAACTTACCATGCAGAGATTCAGAAGAATTGGCTGAAGT 109
                       *       * *    *  *  *  **  * **    * **  *   ***  * *     

consensus_9184#0      GCAAA-TGGACTCATCATGTGACCACTCTGCTATTCTTTGTGTTTGGCATTTTGTCATTG 357
consensus_9184#1      GGAAGCTGAGCTGGTCA-GCAAACTTTAT-CCATGCCTTATGTT----ATAGTGG-ACTG 162
                      * **  **  **  *** *  * *  * * * ** * ** ****    **  **  * **

consensus_9184#0      TGGGAAGGCTTCAAAGAAGATGGAGATTCAGAAGAATTGGCTGAAGTGGAAGCTGAGCTG 417
consensus_9184#1      TAG------TTCAAGTAACCT----ATTGCTAAGTTTTGCCTAATTTTCA---------G 203
                      * *      *****  **  *    ***   ***  *** ** *  *  *         *

consensus_9184#0      GATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGAT 477
consensus_9184#1      GATGCTAATTTTAAAAGCAACAAAGCAGAATCGAAAAGTAAATCTAAGGCAAATGATGAT 263
                      ************************************************************

consensus_9184#0      AAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCA 537
consensus_9184#1      AAAAAGAAGCAGCAAAGACCATTTGTTTTGCAGTTCTTCTCACCAATCTTTATAAAGGCA 323
                      ************************************************************

consensus_9184#0      TTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATTGCTACTATTGGTTTG 597
consensus_9184#1      TTTTCCATTACATTCTTTGGAGAGTGGGGTGATAAGAGTCAAATAGCTACTATTGGTT-- 381
                      ******************************************** *************  

consensus_9184#0      GCTGCTGATGAAAATCCATTCGGTGTTGTCCTGGGGGGAGTTCTGTACGAGCTACATCTT 657
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      CTGTTTCCCTTACACTTTTTAAATGGTTTATTATGTGGTCCTGACTAAACCTACTACTGT 717
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      GCATAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTTGGCCTC 777
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TCAAATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTAT 837
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      CATGTCATACTTGTCAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAA 897
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      GGAGAATTATCATGTTCATCATGGCCGGTTAACAAGCTTGTTTTCACTACGACTTGATCT 957
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      CATCTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGATGGCGAT 1017
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TACTTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGG 1077
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TACCAAAGACTCTACTGGTTGCTTCGTGTTAGTCCCAGCACCAGACAACATTCAGCCAAA 1137
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      ACTGTCGGAGTAGTTGCTGCATACTACCATACTATTTTTTTTGGTCGCAACTATGCATAA 1197
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      GAACTGCTAGTCTTCGGACTAAATTGCCTGGACTGAAGAGGGGTTACAAATCATAAAAAG 1257
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TGATTTCAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1317
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      AAAAAAAAAAAAAAAAAAAAAA 1339
consensus_9184#1      ----------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)