These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1688 fasta sequence [GACAAGGCTGAATATTGGTCTTCAGCAAATTGAAGGTACAGCGACAGTATCTGAATCTGGAAGCAATACTCCTAGTATTGCTGAAGGCCTGTATGAACCTCATAGTCAAGCAGAGAGTTGGCAGGATGATTTGGAACAAGAGAGAAGAGATTGGGAACAATTTTCCCATGCTATTACTGGAGAGGAATCTGAAATAAATTGGCATGAAAATACGTACAATGGTTCATCTCATGAGGGTACCGAAGTTGAAGGTGGTCAAGATGCACATATTCCAGAATCACATGATGAGTTAGCTAGTGACAATCTTCCTCCTCAATCTCATGGAGAACAGCAGGACAATAGCCATCTTCCCGAGGAGAATGAAGAGCTGCATGACAGTGATCTTCAACAATCTCGTGGAGAGTGGAATGAGGGCAGTAATCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGTAAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGACAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGAAAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTGGGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAGAGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACCTCCGCCTATACCTCCTCGCCAGCCACTTTGGCATTCGGAGTTGCATCGTAATAACTGGATCAGACAAAACATACATCGCTCTGATATTGAATGGGAGGCTATTAATGACTTAAGGGCTGATATGGCTAGGCTTCAGCAGGGCATGAGTCATATGCAAAGAATGTTGGAAGCTTGTATGGACATGCAGCTCGAGTTACAGCGATCTGTAAGGCAGGAAGTTTCTGCAGCCTTGAATCGCTTCATCGGGGAGCAAGGTGAAAGTAAAGAAACTATAGACGATGGATCAAAATGGATCCATGTGAGAAAAGGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGCGCGAATGAGTTGGTTCGAAGCGGAGGGAAATGCCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCATCATGTAGATACAGAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGCTTGTAGGTGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTATGCCTGTGTTGTCTTGTGTGTCTCTTGTCTCTGATGAGTTCCATTGTTTTGTTAGATTGGGGCCCTGCTTGTCTGCCTTGGTGTAATATATGGTTTTGGGGTGGCAGAAAGTGTTTTGTTTGGGAACTGGGATTACCGGAGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGATGGGATACAGTAAGAGGGAACTAATGTTCCTGTCTG] [+] EMBL AK069259 [GACAAGGCTGAATATTGGTCTTCAGCAAATTGAAGGTACAGCGACAGTATCTGAATCTGGAAGCAATACTCCTAGTATTGCTGAAGGCCTGTATGAACCTCATAGTCAAGCAGAGAGTTGGCAGGATGATTTGGAACAAGAGAGAAGAGATTGGGAACAATTTTCCCATGCTATTACTGGAGAGGAATCTGAAATAAATTGGCATGAAAATACGTACAATGGTTCATCTCATGAGGGTACCGAAGTTGAAGGTGGTCAAGATGCACATATTCCAGAATCACATGATGAGTTAGCTAGTGACAATCTTCCTCCTCAATCTCATGGAGAACAGCAGGACAATAGCCATCTTCCCGAGGAGAATGAAGAGCTGCATGACAGTGATCTTCAACAATCTCGTGGAGAGTGGAATGAGGGCAGTAATCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGTAAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGACAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGAAAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTGGGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAGAGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACCTCCGCCTATACCTCCTCGCCAGCCACTTTGGCATTCGGAGTTGCATCGTAATAACTGGATCAGACAAAACATACATCGCTCTGATATTGAATGGGAGGCTATTAATGACTTAAGGGCTGATATGGCTAGGCTTCAGCAGGGCATGAGTCATATGCAAAGAATGTTGGAAGCTTGTATGGACATGCAGCTCGAGTTACAGCGATCTGTAAGGCAGGAAGTTTCTGCAGCCTTGAATCGCTTCATCGGGGAGCAAGGTGAAAGTAAAGAAACTATAGACGATGGATCAAAATGGATCCATGTGAGAAAAGGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGCGCGAATGAGTTGGTTCGAAGCGGAGGGAAATGCCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCATCATGTAGATACAGAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGCTTGTAGGTGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTATGCCTGTGTTGTCTTGTGTGTCTCTTGTCTCTGATGAGTTCCATTGTTTTGTTAGATTGGGGCCCTGCTTGTCTGCCTTGGTGTAATATATGGTTTTGGGGTGGCAGAAAGTGTTTTGTTTGGGAACTGGGATTACCGGAGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGATGGGATACAGTAAGAGGGAACTAATGTT ] [+] EMBL CF327568 [ AATCTCGTGGAGAGTGGAATGAGGGCAGTAATCCATTTATTCCTACAGAAGTACACAATGAGTGGCACAGCGGTGATCATTTCCAAGGAGTAAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGACAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGAAAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGCGCTCCTCTCTCTTGGGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAGAGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACCTCCGCCTATACCTCCTCCCCAGCCACTTTGGCATTCGGAGTTGCATCGTAATAACTGGATCAGACAAAACATACATCGCTCTGATATTGAATGGGAGGCTATTAATGACTTAAGGGCTGATATGGCTAGGCTTCAGCAGGGCATGAGTCATATGCAAAGAATGTTGGAAGCTTGTATGGACATGCAGCTCGAGTTAC ] [-] EMBL CF327569 [ ATGAGTCATATGCAAAGAATGTTGGAAGCTTGTATGGACATGCAGCTCGAGTTACAGCGATCTGTAAGGCAGGAAGTTTCTGCAGCCTTGGATCGCTTCATCGGGGAGCAAGGTGAAAGTAAAGAAACTATAGACGATGGATCAAAATGGATCCATGTGAGAAAAGGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGCGCGAATGAGTTGGTTCGAAGCGGAGGGAAATGCCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCATCATGTAGATACAGAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGCTTGTAGGTGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTATGCCTGTGTTGTCTTGTGTGTCTCTTGTCTCTGATGAGTTCCATTGTTTTGTTAGATTGGGGCCCTGCTTGTCTGCCTTGGTGTAATATATGGTTTTGGGGTGGCAGAAAGTGTTTTGTTTGGGAACTGGGATTACCGGAGGCAGCTAGTAATTCATTTCACAACTGATCATTTGAACAAAaaaa ] [-] EMBL CB637623 [ GTTTCTGCAGCCTTGAATCGCTTCATCGGGGAGCAAGGTGAAAGTAAAGAAACTATAGACGATGGATCAAAATGGATCCATGTGAGAAAAGGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGCGCGAATGAGTTGGTTCGAAGCGGAGGGAAATGCCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCATCATGTAGATACAGAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGCTTGTAGGTGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTAGGCCTGTGTTGTCTTGTGTGTCTCTTGTAAAAAATGAGTTCCATTGTTTTGTTAGATTGGGGCCCTGCTTGTCAGCCTTGGTGTAATATATGGTTTTGGGGTGGCAGAAAGTGTTTTGTTTGGGAACTGGGATTACCGGAGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGATGGGATACAGTAAGAGGGAACTAATGTTCCTGTCTG] consensusID : consensus_9191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [AATCTCGTGGAGAGTGGAATGAGGGCAGTAATCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGTAAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGACAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGGTTTTTTTATTTCTTTCATGAAGAAAGTCTCTGCAACATATTTCTTTAGTTCTCAGCGTAAATACTGAATTAGTGTTCATTCTGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGAAAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTGGGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAGAGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACC] [+] EMBL CF309888 [AATCTCGTGGAGAGTGGAATGAGGGCAGTAATCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGTAAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGACAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGGTTTTTTTATTTCTTTCATGAAGAAAGTCTCTGCAACATATTTCTTTAGTTCTCAGCGTAAATACTGAATTAGTGTTCATTCTGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGAAAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTGGGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAGAGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACC] consensusID : consensus_9191#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 99 fasta sequence [CAGAGGACGAGACAAGGGGAAGAGGGGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGATGGGATACAGTAAAAAAAAAAAAA] [+] EMBL CA764076 [CAGAGGACGAGACAAGGGGAAGAGGGGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGATGGGATACAGTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9191#0 GACAAGGCTGAATATTGGTCTTCAGCAAATTGAAGGTACAGCGACAGTATCTGAATCTGG 60 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 AAGCAATACTCCTAGTATTGCTGAAGGCCTGTATGAACCTCATAGTCAAGCAGAGAGTTG 120 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 GCAGGATGATTTGGAACAAGAGAGAAGAGATTGGGAACAATTTTCCCATGCTATTACTGG 180 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 AGAGGAATCTGAAATAAATTGGCATGAAAATACGTACAATGGTTCATCTCATGAGGGTAC 240 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 CGAAGTTGAAGGTGGTCAAGATGCACATATTCCAGAATCACATGATGAGTTAGCTAGTGA 300 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 CAATCTTCCTCCTCAATCTCATGGAGAACAGCAGGACAATAGCCATCTTCCCGAGGAGAA 360 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 TGAAGAGCTGCATGACAGTGATCTTCAACAATCTCGTGGAGAGTGGAATGAGGGCAGTAA 420 consensus_9191#1 -----------------------------AATCTCGTGGAGAGTGGAATGAGGGCAGTAA 31 consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 TCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGT 480 consensus_9191#1 TCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGT 91 consensus_9191#2 -----------------------------------------------------------C 1 consensus_9191#0 AAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGA 540 consensus_9191#1 AAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGA 151 consensus_9191#2 AGAGGACGA--GACAAGGGGAAGAGGGGGCAGCTACTAATTC----ATTTCACA-ACTGA 54 * * ** ** * ** * ** ** * * * * ** * * * ** ** *** consensus_9191#0 CAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGT 600 consensus_9191#1 CAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGT 211 consensus_9191#2 TCATTTGAACAAACTGATTGAT-GGGATACAGTAAAAAAAAAAAAA-------------- 99 * * * *** ****** *** * * * * ** * consensus_9191#0 CCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAG------ 654 consensus_9191#1 CCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGGTTTTT 271 consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 ------------------------------------------------------------ consensus_9191#1 TTATTTCTTTCATGAAGAAAGTCTCTGCAACATATTTCTTTAGTTCTCAGCGTAAATACT 331 consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 ---------------------AAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGA 693 consensus_9191#1 GAATTAGTGTTCATTCTGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGA 391 consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 AAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTG 753 consensus_9191#1 AAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTG 451 consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 GGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAG 813 consensus_9191#1 GGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAG 511 consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 AGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACC 873 consensus_9191#1 AGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACC 571 consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 TCCGCCTATACCTCCTCGCCAGCCACTTTGGCATTCGGAGTTGCATCGTAATAACTGGAT 933 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 CAGACAAAACATACATCGCTCTGATATTGAATGGGAGGCTATTAATGACTTAAGGGCTGA 993 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 TATGGCTAGGCTTCAGCAGGGCATGAGTCATATGCAAAGAATGTTGGAAGCTTGTATGGA 1053 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 CATGCAGCTCGAGTTACAGCGATCTGTAAGGCAGGAAGTTTCTGCAGCCTTGAATCGCTT 1113 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 CATCGGGGAGCAAGGTGAAAGTAAAGAAACTATAGACGATGGATCAAAATGGATCCATGT 1173 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 GAGAAAAGGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATG 1233 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 TGGGCACATGTGCACATGTTCAAAATGCGCGAATGAGTTGGTTCGAAGCGGAGGGAAATG 1293 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 CCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCATCATGTAGATACA 1353 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 GAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGC 1413 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 TTGTAGGTGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTATGCCTGTGTT 1473 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 GTCTTGTGTGTCTCTTGTCTCTGATGAGTTCCATTGTTTTGTTAGATTGGGGCCCTGCTT 1533 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 GTCTGCCTTGGTGTAATATATGGTTTTGGGGTGGCAGAAAGTGTTTTGTTTGGGAACTGG 1593 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 GATTACCGGAGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGAT 1653 consensus_9191#1 ------------------------------------------------------------ consensus_9191#2 ------------------------------------------------------------ consensus_9191#0 GGGATACAGTAAGAGGGAACTAATGTTCCTGTCTG 1688 consensus_9191#1 ----------------------------------- consensus_9191#2 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||