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Oryza sativa
cluster # 9198 cluster # 9198       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9198#0 length = 1964 sequences # 4  
consensus_9198#1 length = 578 sequences # 1  
consensus_9198#2 length = 543 sequences # 1  

consensusID : consensus_9198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1964
fasta sequence
                              [ATCGAATATAAGAAGGATGATGATAGCAATCAACAAGAAGGTGTACAGTATAATCATCAGAATGTAGTCAATGCAGCTTCTCACTACAATACACGAAATGATGATATAACTTTGAAGAGGAAATGTCAAGATGGAGAAAGAGGATCACCTGGGACCTCAAAAAAAAGAAACTGAAGGTGGCAAACACTGGAAAGCACACCGGTTGCAGCAACGAGGATAAAGCCCACCAAGATCAGGATCATAGTGGTTCCAAAAAGTTGAAGTCACCATGTATCGATGATGCCAAGAAGGTGATGCTAGCTGAAGCCGATGTTACCTTGGAGAAAGAGCAGATATCAAAGAGGGACAACCAAACCAAGTTGAATAGCGAAACAAAGGAGGATGATTGTAACACTCAAAGCGATATTAAAAGGGTATCTAGAAGTGCTCGGCGTAAGAAACTCAAAAGACAACTTAGACAGAAAGCCAAAGAACAATTGAAAGAGAAAGAGCACTGTCAAGAACAACCAACCGTGGCTGATTGTCCATCGTCAAACAACCGAGATGTTTTGCCGTCCCCATCAAGCAATCAAAACAACTCGAGCTTGCCATTTGTAAGGCATGAAGCAGATGAGGAAGAATCTGATACATCGGATGATATTGTTCCAGTTGTGGTTAGGCCTGGCCACATTCGCTTTGAGTCAGCAGGCGGAGAATCAGATAAATCACCGGTGAAGGAAATACAGACAACTTTCCAGTGGAGTGGAACTACAAGCAAAAAGAAGGGTCAGAAGTGGGAAATGGACAACTCAAACAAGAAAAGCTCTGATATCAGCTATCATGGGAGGATAACTGGAACTGACACTGAAGTTAACCACCATGTGGCTGGCAACTCTAAGACTAGTGATAATGATTTTGGTTTGGCCAGTAATCAAAAGGTTGGTGAGAGCAGTCATGTTGGATCAGCAAGTGAAAAGATTGTTGCTGAGAAAGGGAAGTCTAGCAGTGAACCTTTAGATTTTGACAGCCTGTATCCCCTAACACGACTTCCCAAGGAAGGAGATCTGATTGTTTATCGGTTGGTTGAACTGTCTTCCTCTTGGTGTCCAGAGCTTTCTTCATACCGTGTTGGCAAAGTTCTTATATATGATCCCATATCTTTGAGGATCATTCTCTTACCTGTTCCTGAGTATCCGTTCACTGCTGGAGAAAAGAATGGTGAAGACGAGTCAGAGATGCTGGTGGA-CATGTCACCTTACAAGGAAGATGGTTCCTTGGAGATCGAGTACTCTTCGCTTCTTGATATTAGACTGCTCAAGGACACTGATTCCGTGCAACCGGCTGTTAGTACTCCCCTGACAGAAACAGGCATTAAAGGTGGATCCCATGCCCAAAAGCCAGCTAATTTAGATAATCATAAAGGTAAAATTCACAGCGAAAAACTGCCAAACAACACCAAAGATCCAGAAGCCACGCAAGAAAAAACACAAAACACGGTCTGGGAGGAAAATGGAGAGGTCGCAAATGACGAG-CCTGCTG-TT-CAGGAAAATGGCTGGGGAACTTGGACACCAAATG-CCAGTACATCTGCTTGGT-CATATAGAGCACTAAGGAG-CAGTGCCCTTGGTCCAACACTTG-CACATTTGAGAGGAAAAAATACCAAGAGGGGTAGACCTTACAATCGGAAGTATGGCAAGTGAGGTTGCTGTATGTAATCGCCGCTTGGCCTGTTCTTTTGTAGTTTTTGTTTGTATGTAATGGTGGGCTGAGCTAGGATTGCTATGTTACTGCCTGTTCATGGCGATATGGGATCTGAATCTAAGACACCTAAATTAGTCCCTAGAGAAGGGTTCTAAACTGTTGAGCTCTGACATTTATGTGAAACTGGAGTTCAACAAGTCTGTTAAAGATGGATGCCATTAGGCACCTGGTTGGTAAGATTGCATTAGAAGCGTTATTGGCAACGAGCTGCAAATAAATTAGATCAC]

[+] EMBL AK064558             [ATCGAATATAAGAAGGATGATGATAGCAATCAACAAGAAGGTGTACAGTATAATCATCAGAATGTAGTCAATGCAGCTTCTCACTACAATACACGAAATGATGATATAACTTTGAAGAGGAAATGTCAAGATGGAGAAAGAGGATCACCTGGGACCTCAAAAAAAAGAAACTGAAGGTGGCAAACACTGGAAAGCACACCGGTTGCAGCAACGAGGATAAAGCCCACCAAGATCAGGATCATAGTGGTTCCAAAAAGTTGAAGTCACCATGTATCGATGATGCCAAGAAGGTGATGCTAGCTGAAGCCGATGTTACCTTGGAGAAAGAGCAGATATCAAAGAGGGACAACCAAACCAAGTTGAATAGCGAAACAAAGGAGGATGATTGTAACACTCAAAGCGATATTAAAAGGGTATCTAGAAGTGCTCGGCGTAAGAAACTCAAAAGACAACTTAGACAGAAAGCCAAAGAACAATTGAAAGAGAAAGAGCACTGTCAAGAACAACCAACCGTGGCTGATTGTCCATCGTCAAACAACCGAGATGTTTTGCCGTCCCCATCAAGCAATCAAAACAACTCGAGCTTGCCATTTGTAAGGCATGAAGCAGATGAGGAAGAATCTGATACATCGGATGATATTGTTCCAGTTGTGGTTAGGCCTGGCCACATTCGCTTTGAGTCAGCAGGCGGAGAATCAGATAAATCACCGGTGAAGGAAATACAGACAACTTTCCAGTGGAGTGGAACTACAAGCAAAAAGAAGGGTCAGAAGTGGGAAATGGACAACTCAAACAAGAAAAGCTCTGATATCAGCTATCATGGGAGGATAACTGGAACTGACACTGAAGTTAACCACCATGTGGCTGGCAACTCTAAGACTAGTGATAATGATTTTGGTTTGGCCAGTAATCAAAAGGTTGGTGAGAGCAGTCATGTTGGATCAGCAAGTGAAAAGATTGTTGCTGAGAAAGGGAAGTCTAGCAGTGAACCTTTAGATTTTGACAGCCTGTATCCCCTAACACGACTTCCCAAGGAAGGAGATCTGATTGTTTATCGGTTGGTTGAACTGTCTTCCTCTTGGTGTCCAGAGCTTTCTTCATACCGTGTTGGCAAAGTTCTTATATATGATCCCATATCTTTGAGGATCATTCTCTTACCTGTTCCTGAGTATCCGTTCACTGCTGGAGAAAAGAATGGTGAAGACGAGTCAGAGATGCTGGTGGA CATGTCACCTTACAAGGAAGATGGTTCCTTGGAGATCGAGTACTCTTCGCTTCTTGATATTAGACTGCTCAAGGACACTGATTCCGTGCAACCGGCTGTTAGTACTCCCCTGACAGAAACAGGCATTAAAGGTGGATCCCATGCCCAAAAGCCAGCTAATTTAGATAATCATAAAGGTAAAATTCACAGCGAAAAACTGCCAAACAACACCAAAGATCCAGAAGCCACGCAAGAAAAAACACAAAACACGGTCTGGGAGGAAAATGGAGAGATCGCAAATGACGAG CCTGCTG TT CAGGAAAATGGCTGGGGAACTTGGACACCAAATG CCAGTACATCTGCTTGGT CATATAGAGCACTAAGGAG CAGTGCCCTTGGTCCAACACTTG CACATTTGAGAGGAAAAAATACCAAGAGGGGTAGACCTTACAATCGGAAGTATGGCAAGTGAGGTTGCTGTATGTAATCGCCGCTTGGCCTGTTCTTTTGTAGTTTTTGTTTGTATGTAATGGTGGGCTGAGCTAGGATTGCTATGTTACTGCCTGTTCATGGCGATATGGGATCTGAATCTAAGACACCTAAATTAGTCCCTAGAGAAGGGTTCTAAACTGTTGAGCTCTGACATTTATGTGAAACTGGAGTTCAACAAGTCTGTTAAAGATGGATGCCATTAGGCA                                                              ]
[+] EMBL OS06253A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTGGAGCATGTCACCTTACAAGGAAGATGGTTCCTTGGAGATCGAGTACTCTTCGCTTCTTGATATTAGACTGCTCAAGGACACTGATTCCGTGCAACCGGCTGTTAGTACTCCCCTGACAGAAACAGGCATTAAAGGTGGATCCCATGCCCAAAAGCCAGCTAATTTAGATAATCATAAAGGTAAAATTCACAGCGAAAAACTGCCAAACAACACCAAAGATCCAGAAGCCACGCAAGAAAAAACACAAAACACGGTCTGGGAGGAAAATGGAGAGGTCGCAAATGACGAG CCTGCTGTTT CAGGGAAATGGCTtg                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL BU673060             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TACTCTTCGCTTCTTGATATTAGACTGCTCAAGGACACTGATTCCGTGCAACCGTCTGTTAGTACTCCCCTGCCAGAAACAGGCATTAAAGGTGGATCCCATGCCCAAAAGCCAGCTAATTTAGATAATCATAAAGGTAAAATTCACAGCGAAAAACTGCCAAACAACACCAAAGATCCAGAAGCCACGCAAGAAAAAACACAAAACACGGTCTGGGAGGAAAATGGAGAGGTCGCAAATGACGAG CCTGCTG TT CAGGAAAATGGCTGGGGAACTTGGACACCAAATG CCAGTACATCTGCTTGGT CATATAGAGCACTAAGGAG CAGTGCCCTTGGTCCAACACTTG CACATTTGAGAGGAAAAAATACCAAGAGGGGTAGACCTTACAATCGGAAGTATGGCAAGTGAGGTTGCTGTATGTAATCGCCGCTTGGCCTGTTCTTTTGTAGTTTTTGTTTGTATGTAATGGTGGGCTGAGCTAGGATTGCTATGTTACTGCCTGTTCATGGCGATATGGGATCTGAATCTAAGACACCTAAATTAGTCCCTAGAGAAGGGTTCTAAACTGTTGAGCTCTGACATTTATGTGAAACTGGAGTTCAACAAGTCTGTTAAAGATGGATGCCATTAGGCACCTGGTTGGTAAGATTGCATTAGAAGCGTTATTGGCAACGAGCTGCAAATAAATTAGATCAC]
[+] EMBL AU093174             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAGAGGTCGCAAATGACGAGCCCTGCTG TTCCAGGAAAATGGCTGGGGAACTTGGACACCAAATGCCCAGTACATCTGCTTGGTCCATATAGAGCACTAAGGAGCCAGTGCCCTTGGTCCAACACTTGCCACATTTGAGAGGAAAAAATACCAAGAGGGGTAGACCTTACAATCGGAAGTATGGCAAGTGAGGTTGCTGTATGTAATCGCCGCTTGGCCTGTTCTTTTGTAGTTTTTGTTTGTATGTAATGGTGGGCTGAGCTAGGATTGCTATGTTACTGCCTGTTCATGGCGATATGGGATCTGAATCTAAGACACCTAAATTAGTCCCTAGAGAAGGGTTCTAAACTGTTGAGCTCTGACATTTATGTGAAACTGGAGTTCAACAAGTCTGTTAAAGATGGATGCCATTAGGCNCCTGGTTGGTAAa                                                 ]


>consensus_9198#0 ATCGAATATAAGAAGGATGATGATAGCAATCAACAAGAAGGTGTACAGTATAATCATCAG AATGTAGTCAATGCAGCTTCTCACTACAATACACGAAATGATGATATAACTTTGAAGAGG AAATGTCAAGATGGAGAAAGAGGATCACCTGGGACCTCAAAAAAAAGAAACTGAAGGTGG CAAACACTGGAAAGCACACCGGTTGCAGCAACGAGGATAAAGCCCACCAAGATCAGGATC ATAGTGGTTCCAAAAAGTTGAAGTCACCATGTATCGATGATGCCAAGAAGGTGATGCTAG CTGAAGCCGATGTTACCTTGGAGAAAGAGCAGATATCAAAGAGGGACAACCAAACCAAGT TGAATAGCGAAACAAAGGAGGATGATTGTAACACTCAAAGCGATATTAAAAGGGTATCTA GAAGTGCTCGGCGTAAGAAACTCAAAAGACAACTTAGACAGAAAGCCAAAGAACAATTGA AAGAGAAAGAGCACTGTCAAGAACAACCAACCGTGGCTGATTGTCCATCGTCAAACAACC GAGATGTTTTGCCGTCCCCATCAAGCAATCAAAACAACTCGAGCTTGCCATTTGTAAGGC ATGAAGCAGATGAGGAAGAATCTGATACATCGGATGATATTGTTCCAGTTGTGGTTAGGC CTGGCCACATTCGCTTTGAGTCAGCAGGCGGAGAATCAGATAAATCACCGGTGAAGGAAA TACAGACAACTTTCCAGTGGAGTGGAACTACAAGCAAAAAGAAGGGTCAGAAGTGGGAAA TGGACAACTCAAACAAGAAAAGCTCTGATATCAGCTATCATGGGAGGATAACTGGAACTG ACACTGAAGTTAACCACCATGTGGCTGGCAACTCTAAGACTAGTGATAATGATTTTGGTT TGGCCAGTAATCAAAAGGTTGGTGAGAGCAGTCATGTTGGATCAGCAAGTGAAAAGATTG TTGCTGAGAAAGGGAAGTCTAGCAGTGAACCTTTAGATTTTGACAGCCTGTATCCCCTAA CACGACTTCCCAAGGAAGGAGATCTGATTGTTTATCGGTTGGTTGAACTGTCTTCCTCTT GGTGTCCAGAGCTTTCTTCATACCGTGTTGGCAAAGTTCTTATATATGATCCCATATCTT TGAGGATCATTCTCTTACCTGTTCCTGAGTATCCGTTCACTGCTGGAGAAAAGAATGGTG AAGACGAGTCAGAGATGCTGGTGGACATGTCACCTTACAAGGAAGATGGTTCCTTGGAGA TCGAGTACTCTTCGCTTCTTGATATTAGACTGCTCAAGGACACTGATTCCGTGCAACCGG CTGTTAGTACTCCCCTGACAGAAACAGGCATTAAAGGTGGATCCCATGCCCAAAAGCCAG CTAATTTAGATAATCATAAAGGTAAAATTCACAGCGAAAAACTGCCAAACAACACCAAAG ATCCAGAAGCCACGCAAGAAAAAACACAAAACACGGTCTGGGAGGAAAATGGAGAGGTCG CAAATGACGAGCCTGCTGTTCAGGAAAATGGCTGGGGAACTTGGACACCAAATGCCAGTA CATCTGCTTGGTCATATAGAGCACTAAGGAGCAGTGCCCTTGGTCCAACACTTGCACATT TGAGAGGAAAAAATACCAAGAGGGGTAGACCTTACAATCGGAAGTATGGCAAGTGAGGTT GCTGTATGTAATCGCCGCTTGGCCTGTTCTTTTGTAGTTTTTGTTTGTATGTAATGGTGG GCTGAGCTAGGATTGCTATGTTACTGCCTGTTCATGGCGATATGGGATCTGAATCTAAGA CACCTAAATTAGTCCCTAGAGAAGGGTTCTAAACTGTTGAGCTCTGACATTTATGTGAAA CTGGAGTTCAACAAGTCTGTTAAAGATGGATGCCATTAGGCACCTGGTTGGTAAGATTGC ATTAGAAGCGTTATTGGCAACGAGCTGCAAATAAATTAGATCAC



consensusID : consensus_9198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence
                              [TGACAGGACTGAAGGAGTAGAAAGTTGAAGTCCCATGTATCGATGATGCCAAGAAGGTGATGCTAGCTGAAGCCGATGTTACCTTGGAGAAAGAGCATATATCAAAGAGGGACAACCAAACCAAGTTGAATAGCGAAACAAAGGAGGATGATTGTAACACTCAAAGCGATATTAAAAAGGTATCTAGAAGTGCTCGGCGTAAGAAACTCAAAAGACAACTTAGACAGAAAGCCAAAGAACAATTGAAAGAGAAAGAGCACTGTCAAGAACAACCAACCGTGGCTGATTGTCCATCGTCAAACAACCGAGATGTTTTGCCGTCCCCATCAAGCAATCAAAACAACTCGAGCTTGCCATTTGTAAGGCATGAAGCAGATGGGGAAGAATCTGATACATCGGATGATATTGTTCCAGTTGTGGTTAGGCCTGGCCACATTCGCTTTGAGTCAGCAGGCGGAGAATCAGATAAATCACCGGTGAAGGAAATACAGACAACTTTCCAGTGGAGTGGAACTACAAGCAAAAAGAAGGGTCAGAAGTGGGGGAATGGACAACTCAAACAAGAAAAGCTCTGATAT]

[+] EMBL CF328287             [TGACAGGACTGAAGGAGTAGAAAGTTGAAGTCCCATGTATCGATGATGCCAAGAAGGTGATGCTAGCTGAAGCCGATGTTACCTTGGAGAAAGAGCATATATCAAAGAGGGACAACCAAACCAAGTTGAATAGCGAAACAAAGGAGGATGATTGTAACACTCAAAGCGATATTAAAAAGGTATCTAGAAGTGCTCGGCGTAAGAAACTCAAAAGACAACTTAGACAGAAAGCCAAAGAACAATTGAAAGAGAAAGAGCACTGTCAAGAACAACCAACCGTGGCTGATTGTCCATCGTCAAACAACCGAGATGTTTTGCCGTCCCCATCAAGCAATCAAAACAACTCGAGCTTGCCATTTGTAAGGCATGAAGCAGATGGGGAAGAATCTGATACATCGGATGATATTGTTCCAGTTGTGGTTAGGCCTGGCCACATTCGCTTTGAGTCAGCAGGCGGAGAATCAGATAAATCACCGGTGAAGGAAATACAGACAACTTTCCAGTGGAGTGGAACTACAAGCAAAAAGAAGGGTCAGAAGTGGGGGAATGGACAACTCAAACAAGAAAAGCTCTGATAT]


>consensus_9198#1 TGACAGGACTGAAGGAGTAGAAAGTTGAAGTCCCATGTATCGATGATGCCAAGAAGGTGA TGCTAGCTGAAGCCGATGTTACCTTGGAGAAAGAGCATATATCAAAGAGGGACAACCAAA CCAAGTTGAATAGCGAAACAAAGGAGGATGATTGTAACACTCAAAGCGATATTAAAAAGG TATCTAGAAGTGCTCGGCGTAAGAAACTCAAAAGACAACTTAGACAGAAAGCCAAAGAAC AATTGAAAGAGAAAGAGCACTGTCAAGAACAACCAACCGTGGCTGATTGTCCATCGTCAA ACAACCGAGATGTTTTGCCGTCCCCATCAAGCAATCAAAACAACTCGAGCTTGCCATTTG TAAGGCATGAAGCAGATGGGGAAGAATCTGATACATCGGATGATATTGTTCCAGTTGTGG TTAGGCCTGGCCACATTCGCTTTGAGTCAGCAGGCGGAGAATCAGATAAATCACCGGTGA AGGAAATACAGACAACTTTCCAGTGGAGTGGAACTACAAGCAAAAAGAAGGGTCAGAAGT GGGGGAATGGACAACTCAAACAAGAAAAGCTCTGATAT



consensusID : consensus_9198#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence
                              [AAAGGTGGATCCCATGCCCAAAAGCCAGTTAATTTAGATAATCATAAAGGTAAAATTCACAGCGAAAAACTGCCAACCACCCCCAAAGATCCAGAAGCCACGCAAGAAAAAACCCAAAACACGGTTTGGGAGGAAAATGGAGAGGTCGCAAATGACGAGCCTGCTGTTCAGGAAAATGGTTGGGGAACTTGGACACCAAATGCCAGTACATTTGCTTGGTCATATAGAGCATTAAGGAGCAGTGCCCTTGGTCCAACACTTGCCCATTTGAGAGGAAAAAATACCAAGAGGGGTAGCCCTTACAATCGGAAGTATGGCAAGTGAGGTTGCTGTATGTAATCCCCGCTTGGCCTGTTCTTTTGAAGTTTTTGTTTGAATGAAATGGTGGGCTGAGCTAGGATTGTTATGTTACTGCCTGTTCATGGCGATATGGGATTTGAATTTAAGACCCCTAAATTAGTCCCTAGAGAAGGGTTTTAAACTGTTGAGCTTTGACATTTATGTGAAACTGGAGTTCACCAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF328288             [AAAGGTGGATCCCATGCCCAAAAGCCAGTTAATTTAGATAATCATAAAGGTAAAATTCACAGCGAAAAACTGCCAACCACCCCCAAAGATCCAGAAGCCACGCAAGAAAAAACCCAAAACACGGTTTGGGAGGAAAATGGAGAGGTCGCAAATGACGAGCCTGCTGTTCAGGAAAATGGTTGGGGAACTTGGACACCAAATGCCAGTACATTTGCTTGGTCATATAGAGCATTAAGGAGCAGTGCCCTTGGTCCAACACTTGCCCATTTGAGAGGAAAAAATACCAAGAGGGGTAGCCCTTACAATCGGAAGTATGGCAAGTGAGGTTGCTGTATGTAATCCCCGCTTGGCCTGTTCTTTTGAAGTTTTTGTTTGAATGAAATGGTGGGCTGAGCTAGGATTGTTATGTTACTGCCTGTTCATGGCGATATGGGATTTGAATTTAAGACCCCTAAATTAGTCCCTAGAGAAGGGTTTTAAACTGTTGAGCTTTGACATTTATGTGAAACTGGAGTTCACCAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9198#2 AAAGGTGGATCCCATGCCCAAAAGCCAGTTAATTTAGATAATCATAAAGGTAAAATTCAC AGCGAAAAACTGCCAACCACCCCCAAAGATCCAGAAGCCACGCAAGAAAAAACCCAAAAC ACGGTTTGGGAGGAAAATGGAGAGGTCGCAAATGACGAGCCTGCTGTTCAGGAAAATGGT TGGGGAACTTGGACACCAAATGCCAGTACATTTGCTTGGTCATATAGAGCATTAAGGAGC AGTGCCCTTGGTCCAACACTTGCCCATTTGAGAGGAAAAAATACCAAGAGGGGTAGCCCT TACAATCGGAAGTATGGCAAGTGAGGTTGCTGTATGTAATCCCCGCTTGGCCTGTTCTTT TGAAGTTTTTGTTTGAATGAAATGGTGGGCTGAGCTAGGATTGTTATGTTACTGCCTGTT CATGGCGATATGGGATTTGAATTTAAGACCCCTAAATTAGTCCCTAGAGAAGGGTTTTAA ACTGTTGAGCTTTGACATTTATGTGAAACTGGAGTTCACCAAAAAAAAAAAAAAAAAAAA AAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9198#0      ATCGAATATAAGAAGGATGATGATAGCAATCAACAAGAAGGTGTACAGTATAATCATCAG 60
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      AATGTAGTCAATGCAGCTTCTCACTACAATACACGAAATGATGATATAACTTTGAAGAGG 120
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      AAATGTCAAGATGGAGAAAGAGGATCACCTGGGACCTCAAAAAAAAGAAACTGAAGGTGG 180
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      CAAACACTGGAAAGCACACCGGTTGCAGCAACGAGGATAAAGCCCACCAAGATCAGGATC 240
consensus_9198#1      --------------------------------------------------TGACAGGACT 10
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      ATAGTGGTTCCAAAAAGTTGAAGTCACCATGTATCGATGATGCCAAGAAGGTGATGCTAG 300
consensus_9198#1      GAAGGAGT---AGAAAGTTGAAGTC-CCATGTATCGATGATGCCAAGAAGGTGATGCTAG 66
consensus_9198#2      --------------------------------AAAGGTGGATCCCATGCCCAAAAGCCAG 28
                                                      *  * **   ** *       * ** **

consensus_9198#0      CTGAAGCCGATGTTACCTTGGAGAAAGAGCAGATATCAAAGAGG-GACAACCAAACC--- 356
consensus_9198#1      CTGAAGCCGATGTTACCTTGGAGAAAGAGCATATATCAAAGAGG-GACAACCAAACC--- 122
consensus_9198#2      TTAATTTAGATA--ATCATAAAGGTAAAATTCACAGCGAAAAACTGCCAACCACCCCCAA 86
                       * *    ***   * * *  **  * *    * * * ** *   * ******  **   

consensus_9198#0      AAGTTGAATAGCGAAACAAAGGAGGATG-ATTGTAACACTCAAAGCGATATTAAAAGGGT 415
consensus_9198#1      AAGTTGAATAGCGAAACAAAGGAGGATG-ATTGTAACACTCAAAGCGATATTAAAAAGGT 181
consensus_9198#2      AGATCCAGAAGCCACGCAAGAAAAAACCCAAAACACGGTTTGGGAGGAAAATGGAGAGGT 146
                      *  *  *  *** *  ***   *  *   *    *    *      ** * *  *  ***

consensus_9198#0      ATCTA--GAAGTGCTCGGCGT--AAGAAACTCAAAAGACAACTTAGACAGAAAGCCAAAG 471
consensus_9198#1      ATCTA--GAAGTGCTCGGCGT--AAGAAACTCAAAAGACAACTTAGACAGAAAGCCAAAG 237
consensus_9198#2      CGCAAATGACGAGCCTGCTGTTCAGGAAAATGGTTGGGGAACTTGGACACCAAATGCCAG 206
                        * *  ** * **  *  **  * **** *     *  ***** ****  **     **

consensus_9198#0      AACAATTGAAAGAGAAAGAGCACTGTCAAGAACAACCAACCGTGGCTGA----TTGTCCA 527
consensus_9198#1      AACAATTGAAAGAGAAAGAGCACTGTCAAGAACAACCAACCGTGGCTGA----TTGTCCA 293
consensus_9198#2      TACATTTGCTTGGTCATATAGAGCATTAAGGAGCAGTGCCCTTGGTCCAACACTTGCCCA 266
                       *** ***   *   *     *   * *** *  *    ** ***   *    *** ***

consensus_9198#0      TC------GTCAAACAACCGAGATGTTTTGCCGTCCCCATCAAGCAATCAAAACAACTCG 581
consensus_9198#1      TC------GTCAAACAACCGAGATGTTTTGCCGTCCCCATCAAGCAATCAAAACAACTCG 347
consensus_9198#2      TTTGAGAGGAAAAAATACCAAGAGGGGTAGCCCTTACAATCGG--AAGTATGGCAAGT-G 323
                      *       *  ***  *** *** *  * *** *  * ***    **  *   *** * *

consensus_9198#0      AGCTTGCCATTTGTAAGGCATGAAGCAGATGAGGAAGAATCTGATACATCGGATGATATT 641
consensus_9198#1      AGCTTGCCATTTGTAAGGCATGAAGCAGATGGGGAAGAATCTGATACATCGGATGATATT 407
consensus_9198#2      AGGTTGCTGTATGTAATCC------CCGCTTGG-------CCTGTTCTTTTGAAGTTTTT 370
                      ** ****  * *****  *      * * *  *       *   * * *  ** * * **

consensus_9198#0      GTTCCAGTTGTG-GTTAGGCCTGGCCACATTCGCTTTGAGTCAGCAGGCGGAGAATCAGA 700
consensus_9198#1      GTTCCAGTTGTG-GTTAGGCCTGGCCACATTCGCTTTGAGTCAGCAGGCGGAGAATCAGA 466
consensus_9198#2      GTTTGAATGAAATGGTGGGCTGAGCTAGGATTGTTATGTTACTGCCTGTTCATGGCGATA 430
                      ***  * *     * * ***   ** *   * * * **   * **  *   *     * *

consensus_9198#0      TAAATCACCGGTGAAGGAAATACAGACAACTTTCCAGTGGAGTGGAACTACAAGCAAAAA 760
consensus_9198#1      TAAATCACCGGTGAAGGAAATACAGACAACTTTCCAGTGGAGTGGAACTACAAGCAAAAA 526
consensus_9198#2      TGGGATTTGAATTTAAGACCCCTAAATTAGTCCCTAGAGAA--GGGTTTTAAACTGTTGA 488
                      *          *  * **     * *  * *  * ** * *  **   *  **      *

consensus_9198#0      GAAGGGTCAGAAGTGGGA-AATGGACAACTCAAACAAGAAAAGCTCTGATATCAGCTATC 819
consensus_9198#1      GAAGGGTCAGAAGTGGGGGAATGGACAACTCAAACAAGAAAAGCTCTGATAT-------- 578
consensus_9198#2      GCTTTGACATTTATGTGAAACTGGAGTTCACCAAAAAAAAAAAAAAAAAAAAAAA----- 543
                      *    * **    ** *  * ****   * * ** ** ****      * *         

consensus_9198#0      ATGGGAGGATAACTGGAACTGACACTGAAGTTAACCACCATGTGGCTGGCAACTCTAAGA 879
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      CTAGTGATAATGATTTTGGTTTGGCCAGTAATCAAAAGGTTGGTGAGAGCAGTCATGTTG 939
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      GATCAGCAAGTGAAAAGATTGTTGCTGAGAAAGGGAAGTCTAGCAGTGAACCTTTAGATT 999
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      TTGACAGCCTGTATCCCCTAACACGACTTCCCAAGGAAGGAGATCTGATTGTTTATCGGT 1059
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      TGGTTGAACTGTCTTCCTCTTGGTGTCCAGAGCTTTCTTCATACCGTGTTGGCAAAGTTC 1119
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      TTATATATGATCCCATATCTTTGAGGATCATTCTCTTACCTGTTCCTGAGTATCCGTTCA 1179
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      CTGCTGGAGAAAAGAATGGTGAAGACGAGTCAGAGATGCTGGTGGACATGTCACCTTACA 1239
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      AGGAAGATGGTTCCTTGGAGATCGAGTACTCTTCGCTTCTTGATATTAGACTGCTCAAGG 1299
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      ACACTGATTCCGTGCAACCGGCTGTTAGTACTCCCCTGACAGAAACAGGCATTAAAGGTG 1359
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      GATCCCATGCCCAAAAGCCAGCTAATTTAGATAATCATAAAGGTAAAATTCACAGCGAAA 1419
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      AACTGCCAAACAACACCAAAGATCCAGAAGCCACGCAAGAAAAAACACAAAACACGGTCT 1479
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      GGGAGGAAAATGGAGAGGTCGCAAATGACGAGCCTGCTGTTCAGGAAAATGGCTGGGGAA 1539
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      CTTGGACACCAAATGCCAGTACATCTGCTTGGTCATATAGAGCACTAAGGAGCAGTGCCC 1599
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      TTGGTCCAACACTTGCACATTTGAGAGGAAAAAATACCAAGAGGGGTAGACCTTACAATC 1659
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      GGAAGTATGGCAAGTGAGGTTGCTGTATGTAATCGCCGCTTGGCCTGTTCTTTTGTAGTT 1719
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      TTTGTTTGTATGTAATGGTGGGCTGAGCTAGGATTGCTATGTTACTGCCTGTTCATGGCG 1779
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      ATATGGGATCTGAATCTAAGACACCTAAATTAGTCCCTAGAGAAGGGTTCTAAACTGTTG 1839
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      AGCTCTGACATTTATGTGAAACTGGAGTTCAACAAGTCTGTTAAAGATGGATGCCATTAG 1899
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      GCACCTGGTTGGTAAGATTGCATTAGAAGCGTTATTGGCAACGAGCTGCAAATAAATTAG 1959
consensus_9198#1      ------------------------------------------------------------
consensus_9198#2      ------------------------------------------------------------
                                                                                  

consensus_9198#0      ATCAC 1964
consensus_9198#1      -----
consensus_9198#2      -----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)