These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 880 fasta sequence [CGGAAATACTGGATGCTGGGATGCAAGGGCCTCTGTTTATGGTAAAATTAGAGAACTGTCCAGGTGAAGTTTTCATTAACTTATCTCCAACCAAGTGTTGGAACATGGTCCGTGAAAGGCTGAACATGGAAATAAGGAGGCAACTTAATATGGGAAAATCAAATCTTCCTACATTGCAGCCTCCAGGATCAGTT-GATGGTCTTG-AAAT-GTTTGG-TTTATTATCACCACCAATAGTT-CAGGCAATTTGGGCGCGGGACAGAGATCACATCTGTACAGAGTACTGGAGATCAAGGCCCCATGTTCTCATTGAGGATCCAAACAATCGGCATATGTTATCTCAGGGTCCACCTCTCCTTGCCCTGAGGGGTCTCATCCAAAGGGCTAACCGGGATGAATTGCAAGTCCTGCGGAGTTTGATGACGAACAGCAACAATTTGGATGATAGCTCCAGGCAACAGGCCGCGCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATA-CCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTAAAAAAAAAAAAAAAAAAA] [+] EMBL BP184624 [CGGAAATACTGGATGCTGGGATGCAAGGGCCTCTGTTTATGGTAAAATTAGAGAACTGTCCAGGTGAAGTTTTCATTAACTTATCTCCAACCAAGTGTTGGAACATGGTCCGTGAAAGGCTGAACATGGAAATAAGGAGGCAACTTAATATGGGAAAATCAAATCTTCCTACATTGCAGCCTCCAGGATCAGTT GATGGTCTTG AAAT GTTTGG TTTATTATCACCACCAATAGTT CAGGCAATTTGGGCGCGGGACAGAGATCACATCTGTACAGAGTACTGGAGATCAAGGC ] [+] EMBL AU068239 [ GTTGGATGGTCTTGAAAATGGTTTGGTTTTATTATCACCACCAATAGTTCCAGGCAATTTGGNCGCGGGACAGAGATCACATCTGTACAGAGTACTGGAGATCAAGGCCCCATGTTCTCATTGAGGATCCAAACAATCGGCATATGTTATCTCAGGGTCCACCTCTCCTTGCCCTGAGGGGTCTCATCCAAAGGGCTAACCGGGATGAATTGCAAGTCCTGCGGAGTTTGATGACGAACAGCAACAATTTGGATGATAGCTCCAGGCAACAGGCCGCGCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATA CCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTAAAAAAAAAAAAAAAAAAA] [+] EMBL AU166466 [ CTCCAGGCACCAGNCCGGGCACATTATCGAAAAGGAGATTNCGAAGCAATTGTGTTGAGAAGGGTAAANANCCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTAAAAAAAAAAAAAAAAAA ] consensusID : consensus_9199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCAATTTGGGCCGGGACCAGAGATCACCATNTGGTCCAGAGTACTCGGGGATTCTTGGCCCCCCCGTTNTTTCCCTGGGGACCCCCCCCCCTCGCCGAATTTTTTCCCNGGGGCCCCCNTTCNCCTTCCCCCTAGGAGGGGTCCTCATCCCAAAGGGTCTAACCGGGATGAATTGCAAGTCCTGCGGAGTTTGATGACGAACAGCCACCAATTTGGATGATAGCTCCAGGCAACAGCCGCGCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACCAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTACCCACNAAAAAAAAAA] [+] EMBL BM421983 [CCAATTTGGGCCGGGACCAGAGATCACCATNTGGTCCAGAGTACTCGGGGATTCTTGGCCCCCCCGTTNTTTCCCTGGGGACCCCCCCCCCTCGCCGAATTTTTTCCCNGGGGCCCCCNTTCNCCTTCCCCCTAGGAGGGGTCCTCATCCCAAAGGGTCTAACCGGGATGAATTGCAAGTCCTGCGGAGTTTGATGACGAACAGCCACCAATTTGGATGATAGCTCCAGGCAACAGCCGCGCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACCAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTACCCACNAAAAAAAAAA] consensusID : consensus_9199#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [GCCAGGGTTAAGCAGATTTAAAACCGAGGGTTGGTTTTCCCCTTGCCTTTCATGCCCATTTTTTCCATTTTTGAGCCCATACCATAAAATTTATGCTTCAGGGGACTGTTGTTTCATTGACTGACTTGGGGACAAACAAATGTGTTGTGTTCCTAAATGGTAGCCAGCTGCCTCATTTTTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF328473 [GCCAGGGTTAAGCAGATTTAAAACCGAGGGTTGGTTTTCCCCTTGCCTTTCATGCCCATTTTTTCCATTTTTGAGCCCATACCATAAAATTTATGCTTCAGGGGACTGTTGTTTCATTGACTGACTTGGGGACAAACAAATGTGTTGTGTTCCTAAATGGTAGCCAGCTGCCTCATTTTTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9199#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [CGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF328474 [CGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 CGGAAATACTGGATGCTGGGATGCAAGGGCCTCTGTTTATGGTAAAATTAGAGAACTGTC 60 consensus_9199#1 ------------------------------------------------------------ consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 CAGGTGAAGTTTTCATTAACTTATCTCCAACCAAGTGTTGGAACATGGTCCGTGAAAGGC 120 consensus_9199#1 ------------------------------------------------------------ consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 TGAACATGGAAATAAGGAGGCAACTTAATATGGGAAAATCAAATCTTCCTACATTGCAGC 180 consensus_9199#1 ------------------------------------------------------------ consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 CTCCAGGATCAGTTGATGGTCTTGAAATGTTTGGTTTATTATCACCACCAATAGTTCAGG 240 consensus_9199#1 -----------------------------------------------------------C 1 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 CAATTTGGGCGCGGGACAGAGATCAC-ATCTG-TACAGAGTACT-GGAGATCAAGG---- 293 consensus_9199#1 CAATTTGGGCCGGGACCAGAGATCACCATNTGGTCCAGAGTACTCGGGGATTCTTGGCCC 61 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 CCCCATGTTCTCATTGAGGATCCAAACAA-TCGGCATATGTTATCTCAGGGTCCACCT-- 350 consensus_9199#1 CCCCGTTNTTTCCCTGGGGACCCCCCCCCCTCGCCGAATTTTTTCCCNGGGGCCCCCNTT 121 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 CTCCTTGCCCT---GAGGGGTC-TCATCCAAAGGG--CTAACCGGGATGAATTGCAAGTC 404 consensus_9199#1 CNCCTTCCCCCTAGGAGGGGTCCTCATCCCAAAGGGTCTAACCGGGATGAATTGCAAGTC 181 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 CTGCGGAGTTTGATGACGAACAGCAAC-AATTTGGATGATAGCTCCAGGCAACAGGCCGC 463 consensus_9199#1 CTGCGGAGTTTGATGACGAACAGCCACCAATTTGGATGATAGCTCCAGGCAACAG-CCGC 240 consensus_9199#2 ------------------------------------------------------------ consensus_9199#3 ------------------------------------------------------------ consensus_9199#0 GCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGG 523 consensus_9199#1 GCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGG 300 consensus_9199#2 --------------------------------------GCCAGGGTTAAGCAGATTTAAA 22 consensus_9199#3 -------------------------------------CGACAGGGTTAAGCAGATCTAAA 23 consensus_9199#0 CTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGAC-AGGGTTAAGCAGATCTAAA 582 consensus_9199#1 CTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACCAGGGTTAAGCAGATCTAAA 360 ************** **** consensus_9199#2 ACCGAGGGTTGGTTTTCCCCTTGCCTTTCATGCCCATTTTTTCCATTTTTGAGCCCATAC 82 consensus_9199#3 ACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATAC 83 consensus_9199#0 ACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATAC 642 consensus_9199#1 ACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATAC 420 ******* *** ** *********************** ******** ************ consensus_9199#2 CATAAAATTTATGCTTCAGGGGACTGTTGTTTCATTGACTGACTTGGGGACAAACAAATG 142 consensus_9199#3 CATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATG 143 consensus_9199#0 CATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATG 702 consensus_9199#1 CATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATG 480 ***** ************** ************************* * *** *** *** consensus_9199#2 TGTTGTGTTCCTAAATGGTAGCCAGCTGCCTCATTTTTCCTGTAAAAAAAAAAAAAAAAA 202 consensus_9199#3 TGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTNNAAAAAAAAAAAAAAA 203 consensus_9199#0 TGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTT 762 consensus_9199#1 TGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTT 540 ***************** **************** ******** ** * consensus_9199#2 AAAAAAAAAAAAAAAAAA------------------------------------------ 220 consensus_9199#3 AAAAAAAAAAAAAAAAA------------------------------------------- 220 consensus_9199#0 CAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAAATGTC 822 consensus_9199#1 CAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAA-TGTC 599 * * ** consensus_9199#2 ---------------------------------------------------------- consensus_9199#3 ---------------------------------------------------------- consensus_9199#0 CATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTAAAAAAAAAAAAAAAAAAA 880 consensus_9199#1 CATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTACCCACNAAAAAAAAAA-- 655 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||