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Oryza sativa
cluster # 9204 cluster # 9204       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9204#0 length = 715 sequences # 3  
consensus_9204#1 length = 625 sequences # 2  
consensus_9204#2 length = 474 sequences # 1  

consensusID : consensus_9204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 715
fasta sequence
                              [ACAAACCCCTCCCCTTGTCGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCAATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACTCATCTAGCAC]

[+] EMBL CB674923             [ACAAACCCCTCCCCTTGTCGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCAATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACTCATCTAGCAC]
[-] EMBL AU030922             [                                            tttTTGCNAACATAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTA CACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACNGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCGTGGCACAACNGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACNGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCAATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCNCGg               ]
[-] EMBL OSC22031             [                                                                                                                                          AACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCA                                                                                                                                                                                                                                                                          ]


>consensus_9204#0 ACAAACCCCTCCCCTTGTCGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAG CAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGC AACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGC TTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCAT TTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCA ACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGT ATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATC AGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCAT GGACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCC GAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCA ATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCT CAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACTCATCTAGCAC



consensusID : consensus_9204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 625
fasta sequence
                              [TTTTTTTTNTNTTTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGNGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTCACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATAGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGNAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAGATGCCAAAAGAACATTTCATTGAGCACTTACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGT]

[-] EMBL AU165575             [TTTTTTTTNTNTTTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGNGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTCACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATAGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGNAATATCAACGACCCTGCC                                                                                                                                                                                                                ]
[+] EMBL CF329171             [                                                                  tttttttAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGAAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCTAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAGATGCCAAAAGAACATTTCATTGAGCACTTACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGT]


>consensus_9204#1 TTTTTTTTNTNTTTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAAT ATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGNGCTTAAAATAGGAGCAAC GTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTCACAAGCATCCT TCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAA ATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATAGAAGTTGTGT CCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTG GATACAGTAAATGTATCAGATCATCGTATTCACTGCTGNAATATCAACGACCCTGCCAAC AACAGGCCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAG ATGCCAAAAGAACATTTCATTGAGCACTTACCGTGGCACAACTGCTGCCCAATGATTTTG GCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTT CATCGCCTGCTTGGGCCTTTTCAGT



consensusID : consensus_9204#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence
                              [TTTTTTTTTTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACCGGGTCGCCATACTGTGGACATTGGGACACACTTAAGGGTGGGCTAACCACTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACCGGACCAAATNGAACAACTATGCAAGTAGGTCAGGGCAACATAACAATGGCCGATTACAAGCGGGAGGCTTAACAACTAGGAGCACNCGTTAAGAGGTTCAAAGGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGGGTATCATCTGGATTTCCCCGTGGTCATCATCCGGGATGCGGGTAGCACCAGCCGTGGGGANNTGCTGAAGTTGAGGCACACAAGCCCGTAGAGGGACGAGATACGCCCGACGGGAAGTTGNGTCCTCAGACCAGTGAAGTATTGATAACTAAGGTTGGGTCCCCTATTTCTGAGGAAGACATTACTCCCCTG]

[-] EMBL BI806422             [TTTTTTTTTTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACCGGGTCGCCATACTGTGGACATTGGGACACACTTAAGGGTGGGCTAACCACTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACCGGACCAAATNGAACAACTATGCAAGTAGGTCAGGGCAACATAACAATGGCCGATTACAAGCGGGAGGCTTAACAACTAGGAGCACNCGTTAAGAGGTTCAAAGGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGGGTATCATCTGGATTTCCCCGTGGTCATCATCCGGGATGCGGGTAGCACCAGCCGTGGGGANNTGCTGAAGTTGAGGCACACAAGCCCGTAGAGGGACGAGATACGCCCGACGGGAAGTTGNGTCCTCAGACCAGTGAAGTATTGATAACTAAGGTTGGGTCCCCTATTTCTGAGGAAGACATTACTCCCCTG]


>consensus_9204#2 TTTTTTTTTTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACCGGGTCGCCATAC TGTGGACATTGGGACACACTTAAGGGTGGGCTAACCACTAAGCAAGCCCTCTAAAAGGGC TGTCTTAACCGGACCAAATNGAACAACTATGCAAGTAGGTCAGGGCAACATAACAATGGC CGATTACAAGCGGGAGGCTTAACAACTAGGAGCACNCGTTAAGAGGTTCAAAGGCTTAGA ACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGGGTATCATCTGGATTTCCC CGTGGTCATCATCCGGGATGCGGGTAGCACCAGCCGTGGGGANNTGCTGAAGTTGAGGCA CACAAGCCCGTAGAGGGACGAGATACGCCCGACGGGAAGTTGNGTCCTCAGACCAGTGAA GTATTGATAACTAAGGTTGGGTCCCCTATTTCTGAGGAAGACATTACTCCCCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9204#0      ------------------------------------------ACAAACCCCTCCCCTTGT 18
consensus_9204#1      ------------------------------------------------------------
consensus_9204#2      TTTTTTTTTTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACCGGGTCGCCATAC 60
                                                                                  

consensus_9204#0      CGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAGCAAGCCCTCTAAAAGGGC 78
consensus_9204#1      -------------------------TTTTTTTTNTNTTTAAGCAAGCCCTCTAAAAGGGC 35
consensus_9204#2      TGTGGACATTGGGACACACTTAAGGGTGGGCTAACCACTAAGCAAGCCCTCTAAAAGGGC 120
                                                            **********************

consensus_9204#0      TGTCTTAACGGA--CAAATTGAAAAA-TATGCAAGTAGGTCAGG-CAACATAA--ATG-C 131
consensus_9204#1      TGTCTTAACGGA--CAAATTGAAAAA-TATGCAAGTAGGTCAGG-CAACATAA--ATG-C 88
consensus_9204#2      TGTCTTAACCGGACCAAATNGAACAACTATGCAAGTAGGTCAGGGCAACATAACAATGGC 180
                      ********* *   ***** *** ** ***************** ********  *** *

consensus_9204#0      CGATTACAA-CGGGAG-CTTAAAA--TAGGAGCA-ACGTTAAGAGGTTCAAAG-CTTAGA 185
consensus_9204#1      CGATTACAA-CGGGNG-CTTAAAA--TAGGAGCA-ACGTTAAGAGGTTCAAAG-CTTAGA 142
consensus_9204#2      CGATTACAAGCGGGAGGCTTAACAACTAGGAGCACNCGTTAAGAGGTTCAAAGGCTTAGA 240
                      ********* **** * ***** *  ********  ***************** ******

consensus_9204#0      ACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCC 245
consensus_9204#1      ACTTAGAAGTGCATTACAACAAACTTCACAAGCATCCTTCGTGTATCATCTGCATTTCCC 202
consensus_9204#2      ACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGGGTATCATCTGGATTTCCC 300
                      ************************** ************** ********** *******

consensus_9204#0      CT--GTCATCATCCTGGATGCGG-TAGCAC-AGCC-TGTGGAAATGCTGAAGTTGAGGCA 300
consensus_9204#1      CT--GTCATCATCCTGGATGCGG-TAGCAC-AGCC-TGTGGAAATGCTGAAGTTGAGGCA 257
consensus_9204#2      CGTGGTCATCATCCGGGATGCGGGTAGCACCAGCCGTGGGGANNTGCTGAAGTTGAGGCA 360
                      *   ********** ******** ****** **** ** ***  ****************

consensus_9204#0      -ACAAGCACGTAGAGGGACGAGATA-GCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGA 358
consensus_9204#1      -ACAAGCACGTAGAGGGACGAGATA-GCCAGAATAGAAGTTGTGTCCTCAGCACCAGTGA 315
consensus_9204#2      CACAAGCCCGTAGAGGGACGAGATACGCCCGACGGGAAGTTGNGTCCTCAG-ACCAGTGA 419
                       ****** ***************** *** **   ******* ******** ********

consensus_9204#0      -GTAT-GATA-CTAATGTTGG--TCCCTATTTCTGC---AAGCAT-ACTCCCTGGATACA 409
consensus_9204#1      -GTAT-GATA-CTAATGTTGG--TCCCTATTTCTGC---AAGCAT-ACTCCCTGGATACA 366
consensus_9204#2      AGTATTGATAACTAAGGTTGGGTCCCCTATTTCTGAGGAAGACATTACTCCCCTG----- 474
                       **** **** **** *****   ***********    *  *** ******  *     

consensus_9204#0      GTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGG 469
consensus_9204#1      GTAAATGTATCAGATCATCGTATTCACTGCTGNAATATCAACGACCCTGCCAACAACAGG 426
consensus_9204#2      ------------------------------------------------------------
                                                                                  

consensus_9204#0      CCTTTGTTCATGGACCGTGGCACAACT--GCTGCCCAATGATTTTGGCATCTGTGGTTTT 527
consensus_9204#1      CCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAGATGCCA 486
consensus_9204#2      ------------------------------------------------------------
                                                                                  

consensus_9204#0      AAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGG 587
consensus_9204#1      AAAGAACATTTC----ATTGAGCACTTACCGTGGCACAA-CTGCTGC-CCAATGATTTTG 540
consensus_9204#2      ------------------------------------------------------------
                                                                                  

consensus_9204#0      GCCTTTTCAGTCAATGATATACCAAAGATTTTG-CAGCCATTTGTATTAAGACACTTGTT 646
consensus_9204#1      GCATCTGTGGTT--TTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAAT--CC 596
consensus_9204#2      ------------------------------------------------------------
                                                                                  

consensus_9204#0      ATTTGATT-CATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACT 705
consensus_9204#1      ACTTCATCGCCTGCTTGGGCCTTTTCAGT------------------------------- 625
consensus_9204#2      ------------------------------------------------------------
                                                                                  

consensus_9204#0      CATCTAGCAC 715
consensus_9204#1      ----------
consensus_9204#2      ----------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)