These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1239 fasta sequence [CGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGCGGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATTGCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCCTGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTTTTACCCCATCTGATGCATAAGCAAGGTGACTTATTTTGGAGAGAGCTTGTGAAAATGTGGTCAAACTATTGTGCCATGATTAGATTCACAACTGGCTTTTTGGCCTATTTGGACCGCTGCTTTGTTACACATAAGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCAGTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTGATTCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTTTGATGGGTATTATGCGTGGCATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGTATTTCTGAGGAAGAGGGTTCAGGCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAA-TTGACAATGGC-TTGGACAACAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCAGGTTACATATAGAAGGGTTTTAGAACATGGTCTACATGAACGAGAACCTTTTGTGCAGCTAGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGATCTTGTTGACCTATCACTGATCTCATTGGCAAGATTCAGTTAGAGTTCTATGTGCACGCTAAAAAAAAAAAA] [+] EMBL AK064133 [CGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGCGGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATTGCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCCTGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTTTTACCCCATCTGATGCATAAGCAAGGTGACTTATTTTGGAGAGAGCTTGTGAAAATGTGGTCAAACTATTGTGCCATGATTAGATTCACAACTGGCTTTTTGGCCTATTTGGACCGCTGCTTTGTTACACATAAGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCAGTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTGATTCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTTTGATGGGTATTATGCGTGGCATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGTATTTCTGAGGAAGAGGGTTCAGGCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAAAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAA TTGACAATGGC TTGGACAACAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCAGGTTACATATAGAAGGGTTTTAGAACATGGTCTACATGAACGAGAACCTTTTGTGCAGCTAGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGATCTTGTTGACCTATCACTGATCTCATTGGCAAGATTCAGTTAGAGTTCTATGTGCA ] [-] EMBL CB653239 [ AACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCAGTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTGATTCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTTTGATGGGTATTATGCGTGGCATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGTATTTCTGAGGAAGAGGGTTCAGGCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGACTGTAGAGGATGATTTTTTGGACAGATGCAGTCGCTTGACAA TTGACAATGGC TTGGACAACAATTTTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCAGGTTACATATAGAAGGGTTTTAGAACATGGTTTACATGAACGAGAACCTTTTGTGCAGCTAGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGATCTTGTTGACCTATCACTGATCTCATTGGCAAGGTTCAGT ] [-] EMBL CA762636 [ TTTCGTACTTCAATAATGAAATATCAGATGTTCTACTGACTTTGATTCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTNTGATGGGTATTATGCGTGGCATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTGTGCAGAAGGAAACGAAGAGACTGATTCACTATCTGTGTATTTCTGAGGAAGAGGGTTCAGGCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAA TTGACAATGGC TTGGACAACGATTCTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCAGGTTACATATAGAAGGGTTTTAGAACATGGTCTACATGAACGAGAACCTTTTGTGCAGCTAGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGAGCTTGTTGACCTATCACTGATCTCATTGGCAAGATTCAGTTAGAGTTCTATGTGCCCGCTAAAAAAAAAAAA] [-] EMBL CB653238 [ ATATCAGATGTTTTACTGACTTTGATTCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTTTGATGGGTATTATGGGCGGCATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCCCTATCTGTGTATTTCTGAGGAAGAGGGTTCAGCCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATCCAAGACTGTAGAGGATGATCTTTTGGACAGATGCAGTCGCTTGACAA TTGACAATGGC TGGGACAACAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCAGGTTACATATAGAAGGGTTTTAGAACATGGTTTACATGAACGAGACCCTTTTGTGCAGCTAGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGATCTTGTTGACCTATCACTGATCTCTTTGGAGGGATTCAGTTAGAGTTCTct ] [+] EMBL D43526 [ ACTACTCCAGGAAAAGTTATGANTGGNTTGTNCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTNTGCAGAAGGAAATNAAGAGACTGATTCANTATCTGTTTATTNNTNAGGAAGAGGGTTCAGGCCTCTTTTTGANGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGACTGTAGAGGATGANCTCNTGGNCAGATGCAGTCGCTTGACAATTTGTCAATGGCTTTGGNCANCAttnntt ] consensusID : consensus_9208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [CCTCACCCGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGCGGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATTGCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCCTGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTACTACAGTACTAGACTGTTGCTAGTTTTTAAATCCACAATGTCATATTTCTAGACATAGCCAAGTAAGTTTATTGTGTTGCATAATGATGATTGAAATCCTCAATTTGAATCTAATGAAATGTCAACTTCAT] [+] EMBL AK062782 [CCTCACCCGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGCGGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATTGCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCCTGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTACTACAGTACTAGACTGTTGCTAGTTTTTAAATCCACAATGTCATATTTCTAGACATAGCCAAGTAAGTTTATTGTGTTGCATAATGATGATTGAAATCCTCAATTTGAATCTAATGAAATGTCAACTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9208#0 -------CGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGC 53 consensus_9208#1 CCTCACCCGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGC 60 ***************************************************** consensus_9208#0 GGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATT 113 consensus_9208#1 GGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATT 120 ************************************************************ consensus_9208#0 GCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCC 173 consensus_9208#1 GCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCC 180 ************************************************************ consensus_9208#0 TGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAA 233 consensus_9208#1 TGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAA 240 ************************************************************ consensus_9208#0 CTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACC 293 consensus_9208#1 CTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACC 300 ************************************************************ consensus_9208#0 AGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAA 353 consensus_9208#1 AGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAA 360 ************************************************************ consensus_9208#0 TGGTTTTACCCCATCTGATGCATAAGCAAGGTGACTTATTTTGGAGAGAGCTTGTGAAAA 413 consensus_9208#1 TGGTACTACAGTACTAGACTGTT--GCTAGTTTTTAAATCCACAATGTCATATTTCTAGA 418 **** *** * ** * ** ** * ** * * * * * consensus_9208#0 TGTGGTCAAACTATTGTGCCATGAT-TAGATTCACAACTGGCTTTTTGGCCTATTTGGAC 472 consensus_9208#1 CATAGCCAAGTAAGTTTATTGTGTTGCATAATGATGATTGAAATCCT---CAATTTGAAT 475 * * *** * * * ** * * * * * * ** * * * ***** * consensus_9208#0 C-GCTGCTTTGTTACACATAAGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTT 531 consensus_9208#1 CTAATGAAATGTCA-ACTTCAT-------------------------------------- 496 * ** *** * ** * * consensus_9208#0 CTTTTCTCCAGTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTGAT 591 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 TCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTTTGATGGGTATTATGCGTGG 651 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 CATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTT 711 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 GTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGC 771 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 TAAGGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGTATTTC 831 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 TGAGGAAGAGGGTTCAGGCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTA 891 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 TGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGAC 951 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 TGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATGGCTTGGACAA 1011 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 CAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCA 1071 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 GGTTACATATAGAAGGGTTTTAGAACATGGTCTACATGAACGAGAACCTTTTGTGCAGCT 1131 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 AGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGATCTTGTTGACCTATCACTGATCTC 1191 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 ATTGGCAAGATTCAGTTAGAGTTCTATGTGCACGCTAAAAAAAAAAAA 1239 consensus_9208#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||