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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1303 fasta sequence
[GTCTAAACCGATCGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTCGGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTCCTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCCTCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGAGCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCAATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATTCAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATT-GGAGTGGAGTTCCAGACACAAAAGTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCAGAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGATATTAGCAGGCGTCAGACTTTTG-ATAGTGTTGGTCGATGGC-TGAATGAAC-TGCACACTCATTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTGA-GGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTT-GGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGATATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTCATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAGGTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGATTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGTTCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGTGTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAGATTACTTGCTTTTTT]
[+] EMBL CF318133 [GTCTAAACCGATCGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTCGGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTCCTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCCTCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGAGCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCAATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATTCAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATTGGGAGTGGAGTTCCAGACACAAAAGTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCAGAGCAGTCACATC ]
[+] EMBL AK102491 [ CGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTCGGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTCCTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCCTCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGAGCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCAATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATTCAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATT GGAGTGGAGTTCCAGACACAAAAGTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCAGAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGATATTAGCAGGCGTCAGACTTTTG ATAGTGTTGGTCGATGGC TGAATGAAC TGCACACTCATTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTGA GGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTT GGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGATATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTCATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAGGTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGATTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGTTCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGTGTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAGATTACTTGCTTTTTT]
[+] EMBL C73266 [ TCAAATTTNCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATT GGAGTGGAGTTCCAGACACAAAAGTTGGTAATTNATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCANAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGATATTAGCAGGCGTCAGACTTTTG ATAGTGTTGGTCGATGGC TGAATGAAC TGCACACTCATTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTGAGGGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTTGGGCCTCATC AATTTCGNGGAgtt ]
[+] EMBL AU085944 [ CAAACTTTTGAANAGTGTTGGGCCAAGGCTTGAATGAACTTGCACACTCATTCCGATATGAATGTCGTCNCAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTAA GGTAAGCACCGCAGAAGNCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTT GGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGATATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTCATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAGGTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGATTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGTTCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGTGTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAGATTAaaaaaaaa ]
consensusID : consensus_9209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 173 fasta sequence
[ATGGGCTGAAGGAGTAGAAAAAAATTTCAATGTATAGTTCGATTGATCCCCTTTTTGAGGTATTGGGTATACGTGATTGGGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGGGTCATTTTTTTTACATCATTTTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF330488 [ATGGGCTGAAGGAGTAGAAAAAAATTTCAATGTATAGTTCGATTGATCCCCTTTTTGAGGTATTGGGTATACGTGATTGGGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGGGTCATTTTTTTTACATCATTTTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF330489 [ AATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGCGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9209#0 GTCTAAACCGATCGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTC 60
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 GGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTC 120
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 CTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCC 180
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 TCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGA 240
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 GCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCA 300
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 ATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATT 360
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 CAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGC 420
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 AAGGAACGAGTTCTATCCAAACTCTAAATCTACTATTGGAGTGGAGTTCCAGACACAAAA 480
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 GTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCG 540
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 CTTCAGAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGA 600
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 TATTAGCAGGCGTCAGACTTTTGATAGTGTTGGTCGATGGCTGAATGAACTGCACACTCA 660
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 TTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCG 720
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 TGAGGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGA 780
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 GACCTCAGCCTTGGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGAT 840
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 ATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTC 900
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 ATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAG 960
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 GTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGA 1020
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 TTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGT 1080
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 TCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGT 1140
consensus_9209#1 ------------------------------------------------------------
consensus_9209#0 GTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCT 1200
consensus_9209#1 ----ATGGGCTGAAGGAGTAGAAAAAAATTTCAATGTATAGTTCGATTGATCCCCTTTTT 56
*** ****** **************************** *
consensus_9209#0 GAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGT 1260
consensus_9209#1 GAGGTATTGGGTATACGTGATTGGGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGGGT 116
*********************** ********************************* **
consensus_9209#0 CATTCTCTCTACATCATTCTAGCCTTAGATTACTTGCTTTTTT-------------- 1303
consensus_9209#1 CATTTTTTTTACATCATTTTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 173
**** * * ********* ******** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||