These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1173 fasta sequence [CCACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTCCGCCTCGCCGGAGATGGGCGGCGCCACCTCGCCGGCGGCGCCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCCCTTCCTCCACGGATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAACCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATCTTGGAGTCTGGATTTGATATCGTCAAAGAGGCAGTGGTTCAGCTGGATGCGGAGAGGGCATCACTCTTCTATGCGGAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATG-AGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTT-CCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGTAAAGACCAGGACGGTGCATG-CCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAAT-CTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATCACGAACTACCCCTGTTTCTGATCGTTAGCGATGATAGTGATCTAAAATTTTGCTGATCATTGACCCTAAAATAAAATTCTGAACAGTAATTTCAGAATCCAGAGAGCCCCTATGAGGCTATGACCTATCTGAAGTTCTGAACCGGGGAGATTTCACGTGAGTTTTGTTTCTTGTAAATCATGGACAAAACTAACAGCAGAATTGAGTTTCTTCTCTCTGCTTTGCAATTAAAAAAAAAANAANN] [+] EMBL AK106382 [CCACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTCCGCCTCGCCGGAGATGGGCGGCGCCACCTCGCCGGCGGCGCCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCCCTTCCTCCACGGATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAACCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATCTTGGAGTCTGGATTTGATATCGTCAAAGAGGCAGTGGTTCAGCTGGATGCGGAGAGGGCATCACTCTTCTATGCGGAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATG AGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTT CCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGTAAAGACCAGGACGGTGCATG CCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAAT CTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATCACGAACTACCCCTGTTTCTGATCGTTAGCGATGATAGTGATCTAAAATTTTGCTGATCATTGACCCTAAAATAAAATTCTGAACA ] [+] EMBL AU175046 [ ACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTCCGCCTCGCCGGAGATGGGCGGCGCCACCTCGCCGGCGG GCCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGGATGCTGGAGCTGCGTA NTATCGAGAGGGAGAGGACGCTGGCGATGATCAAACCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATCTTGGAGTCTGGATTTGATATCGTCAAAGAGGCAGTGGTTCAGCTGGATGCGGAGAGGGCATCACTCTTCTATGCGGA CATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATT ] [+] EMBL AU175047 [ ATGNAGCTTTAGTCCTGTAGAGGATAGACCGGTGTATATGCGACATGTCGTAAGGCAGAT ATTTTGCAGTTTATTTGTTCCCTTACAGTGCCTAACACCTGGTTGGNCGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTNGATTGTGTATGGTAAAGACCAGGACGGTGCATGCCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAATACTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATCACGAACTACCCCTGTTTCTGATCGTTAGCAATGATAGTGATCTAAAATTTTGCTGATCATTGACCCTAAAATAAAATTCTGAACAGTAATTTCAGAATCCAGAGAGCCCCTATGAGGCTATGACCTATCTGAAGTTCTGAACCGGGGAGATTTCACGTGAGTTTTGTTTCTTGTAAATCATGGACAAAACTAACAGCAGAATTGAGTTTCTTCTCTCTGCTTTGCAATTAAAAAAAAAANAANN] consensusID : consensus_9210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [TGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAGCTTTAAATTGTGTATGGTAAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCGTAGCCTGTGCTGTTCATTTCAAAAAAAAAAAAAAAAACACTGTCATGCCGTGTACGTAG] [-] EMBL CF330575 [TGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAGCTTTAAATTGTGTATGGTAAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCGTAGCCTGTGCTGTTCATTTCAAAAAAAAAAAAAAAAACACTGTCATGCCGTGTACGTAG] consensusID : consensus_9210#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [CTAATGAGCATTAGACCCACATGTGGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAAGATTCACCCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGTAAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGGGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATAAAAAAAAAA] [+] EMBL BI804939 [CTAATGAGCATTAGACCCACATGTGGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAAGATTCACCCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGTAAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGGGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATAAAAAAAAAA] consensusID : consensus_9210#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 48 fasta sequence [CACGGGAGACCCACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTC] [+] EMBL CF330574 [CACGGGAGACCCACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 CCACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTCCGCCTCGCCGGAGATGGGCGGC 60 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 GCCACCTCGCCGGCGGCGCCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCCCTTC 120 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 CTCCACGGATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAA 180 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 CCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATCTTGGAGTCTGGA 240 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 TTTGATATCGTCAAAGAGGCAGTGGTTCAGCTGGATGCGGAGAGGGCATCACTCTTCTAT 300 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 GCGGAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGTGGTCCA 360 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 ----------------TGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGG 44 consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 GTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGG 420 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 CCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAAT-AGCATTAGAGCAATGTGTGG 103 consensus_9210#2 ----------------------------------CTAATGAGCATTAGACCCACATGTGG 26 consensus_9210#0 CCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAAT-AGCATTAGAGCAATGTGTGG 479 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 ---AGTGGACTCAGAGAAAAACTGTGTGCATGGTTCA-GATTCACC-ACAATCTGCAGCC 158 consensus_9210#2 TGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAAGATTCACCCACAATCTGCAGCC 86 consensus_9210#0 ---AGTGGACTCAGAGAAAAACTGTGTGCATGGTTCA-GATTCACC-ACAATCTGCAGCC 534 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 AGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTG 218 consensus_9210#2 AGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTG 146 consensus_9210#0 AGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTG 594 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 TAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCA 278 consensus_9210#2 TAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCA 206 consensus_9210#0 TAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCA 654 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 GTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGG 338 consensus_9210#2 GTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGG 266 consensus_9210#0 GTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGG 714 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 AAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAGCTTTAAATTGTGTATGGT 398 consensus_9210#2 AAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGT 326 consensus_9210#0 AAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGT 774 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 AAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTT 458 consensus_9210#2 AAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTT 386 consensus_9210#0 AAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTT 834 consensus_9210#3 ----------------CACGGGAGACCCACCGCT-AAGCTCCCTCCCTCCTCTCTCCGGC 43 ** * *** **** ** **** * * ** * * ** consensus_9210#1 TTTGTACTGGTGCAAACTTGTGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCGTAGC 518 consensus_9210#2 TTTGTACTGGTGCAAACTTGGGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCCTAGC 446 consensus_9210#0 TTTGTACTGGTGCAAACTTGTGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCCTAGC 894 consensus_9210#3 GCTTC------------------------------------------------------- 48 * consensus_9210#1 CTGTGCTGTTCATTTCAAAAAAAAAAAAAAAAACACTGTCATGCCGTGTACGTAG----- 573 consensus_9210#2 CTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATAAAAAAAAAA---------------- 490 consensus_9210#0 CTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATCACGAACTACCCCTGTTTCTGATCGT 954 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 TAGCGATGATAGTGATCTAAAATTTTGCTGATCATTGACCCTAAAATAAAATTCTGAACA 1014 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 GTAATTTCAGAATCCAGAGAGCCCCTATGAGGCTATGACCTATCTGAAGTTCTGAACCGG 1074 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 GGAGATTTCACGTGAGTTTTGTTTCTTGTAAATCATGGACAAAACTAACAGCAGAATTGA 1134 consensus_9210#3 ------------------------------------------------------------ consensus_9210#1 --------------------------------------- consensus_9210#2 --------------------------------------- consensus_9210#0 GTTTCTTCTCTCTGCTTTGCAATTAAAAAAAAAANAANN 1173 consensus_9210#3 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||