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Oryza sativa
cluster # 9224 cluster # 9224       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9224#0 length = 2170 sequences # 2  
consensus_9224#1 length = 703 sequences # 1  
consensus_9224#2 length = 689 sequences # 1  
consensus_9224#3 length = 539 sequences # 2  

consensusID : consensus_9224#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2170
fasta sequence
                              [CACAAACCAAACCCTAGCGTGGGAAGCGGCGGCGACCGGGCGACGGCAAGCGGCGGCGACGTGAGCAGGGTTGGCCACCAACGGCGGAGCGACGCGCGAGTGCTGCGGGCTGCGGCGAGCGGAAGGCGGCGCACCACGCGCGGGCTGCGGCGGCAGGCCGGCGAGTGTGACTGGGATTGGGCTGTTGGGCGAGCTCGGCTGACCAGTTGATGAAGCTCCCCTAATTGAAGAACCACCAACAGTTGCCATAGTCGATGTATTCTGAGACTGATTTCTCTTTCAAGGATGCCAACAAACTGTGCTCTCTTATTCGGAAGCAGCAAGCCCTTGCCAAAAAGAAAAGGAAATGGCTGCGGTCTCTGATTCCAAGGGAAGACGGTCTCATCAAACCTATCAAACGACCCAAGTTTCTAAAAGATGTGTACTTGGCTGAATCATATGTAAGGAGTGATGAGGTTTCTTGTGAGAAAGTCATAGCCCATGTTGAAAAATGTTATGGTTTCCAAAGCGATGGCTACAGCCACCACATTGTTCAGGATGGCCTCCAGCTTTTTAAGTTGCAAAAAGGCAAGGATGGCTCACTCAGTCCACAAGGTCTTGCAGACATGCAACTCATAATAAATAAGTTAAGCAATGAAGCACTTCATTCAGTGGCTAACATCGCCACCCACAATAGGGTTAGTTTTGAGAAGACCAGGCCAGCGATGAAAAAGATCATAGAAGACCACCTACCACAATACTTGGCAAACTTGCATGATGAAAATGACATGTCTCAGCTGTCGCACATTTTAACAAATCCATTCAGTTACCGATCTAATTCCTTAAACATTACAACACCTATTTCACCGAAAATGCTATCATCCATCGACCAGGCATTAAATGTACTCAGTACACTGACTATACAAGCTCTTGTTGCAATGAAAAGGAAGCTTGATGAAGTATCTTTCACCCCAAAATTTAGTTTTGTACCTCGTATAAGCAGAAAGGCGCATATGGTTACTGTGATTAGGAAAGAGTGCAATAAGATGATTTCAAGGGTTGGGGAAAGTGGTGACCTGCCAAAGAATTTGGCAAAAGCACTGTCAGTGGTGAATCTGTATAGGAAGCAAGAGTTGAAATGCATGGACATCTCACAGGCAGAGTTCTTTCCATTCTCAAAAAAAGCAATTTTCTTGCAAAATGATGTCCTGAATGCTATTTGGTCAATTCAAAAGTTGAAGAAAGGGGATCTTAAATTGCTGCGTGCCATACTATGTCAAGGTTCAAACGATGAGATGCTGCTAAAGACTACTGTGAGAAGGTATTTGATAGATTGTTTGTTTGAATGTGATGAGGGTGATTTACCAGATGAGGCACTGAGAGCCATTGCTTTGTGCAATCAGATGCCGCTGCGTCAAAAAATTGATTTCACAGAACAAAGGAAGGGTGCAGAGTTAGAAGCTGTACTGAATGTAAGCAGTAGTCTTAGAGCTCTAGTATATCATTGTACAGGAGGCCAAACTGATGATCAGTTAATGAACTGTGAGAGTGAATGCCACAGCGATGAACAAGTGATGAGCTTAGGTTGTGATGACTACAGTTGTGATAATGATTTCGTGCTCACAGAGGGTTACAAAAATTTTGGTCATCAGCAGCATAAAATAGATGAAGCTTGTTCGAGTAGCATGGTCAACCCTGTCAGTGTGAGTGGACATTTCTCGAGTGGAGCTGGTAGTAATATGAAGAAACCTACTTTGCATGAGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGAGATTTGTGATGATGCTGCAATTTTGGCCCACAAGCTTCTAGGGAAAATTCTGGACAACACGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTCTACTTCGCATGGTCCTCAAGCTGCATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAATGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACTCAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGAACTGCTTGTTCATATATATGTCACCATTTTCTTTTGGTTGAACCTGTTAATGTTACACTTATGATACATATACTACTATCCAACATCATT]

[+] EMBL AK068527             [CACAAACCAAACCCTAGCGTGGGAAGCGGCGGCGACCGGGCGACGGCAAGCGGCGGCGACGTGAGCAGGGTTGGCCACCAACGGCGGAGCGACGCGCGAGTGCTGCGGGCTGCGGCGAGCGGAAGGCGGCGCACCACGCGCGGGCTGCGGCGGCAGGCCGGCGAGTGTGACTGGGATTGGGCTGTTGGGCGAGCTCGGCTGACCAGTTGATGAAGCTCCCCTAATTGAAGAACCACCAACAGTTGCCATAGTCGATGTATTCTGAGACTGATTTCTCTTTCAAGGATGCCAACAAACTGTGCTCTCTTATTCGGAAGCAGCAAGCCCTTGCCAAAAAGAAAAGGAAATGGCTGCGGTCTCTGATTCCAAGGGAAGACGGTCTCATCAAACCTATCAAACGACCCAAGTTTCTAAAAGATGTGTACTTGGCTGAATCATATGTAAGGAGTGATGAGGTTTCTTGTGAGAAAGTCATAGCCCATGTTGAAAAATGTTATGGTTTCCAAAGCGATGGCTACAGCCACCACATTGTTCAGGATGGCCTCCAGCTTTTTAAGTTGCAAAAAGGCAAGGATGGCTCACTCAGTCCACAAGGTCTTGCAGACATGCAACTCATAATAAATAAGTTAAGCAATGAAGCACTTCATTCAGTGGCTAACATCGCCACCCACAATAGGGTTAGTTTTGAGAAGACCAGGCCAGCGATGAAAAAGATCATAGAAGACCACCTACCACAATACTTGGCAAACTTGCATGATGAAAATGACATGTCTCAGCTGTCGCACATTTTAACAAATCCATTCAGTTACCGATCTAATTCCTTAAACATTACAACACCTATTTCACCGAAAATGCTATCATCCATCGACCAGGCATTAAATGTACTCAGTACACTGACTATACAAGCTCTTGTTGCAATGAAAAGGAAGCTTGATGAAGTATCTTTCACCCCAAAATTTAGTTTTGTACCTCGTATAAGCAGAAAGGCGCATATGGTTACTGTGATTAGGAAAGAGTGCAATAAGATGATTTCAAGGGTTGGGGAAAGTGGTGACCTGCCAAAGAATTTGGCAAAAGCACTGTCAGTGGTGAATCTGTATAGGAAGCAAGAGTTGAAATGCATGGACATCTCACAGGCAGAGTTCTTTCCATTCTCAAAAAAAGCAATTTTCTTGCAAAATGATGTCCTGAATGCTATTTGGTCAATTCAAAAGTTGAAGAAAGGGGATCTTAAATTGCTGCGTGCCATACTATGTCAAGGTTCAAACGATGAGATGCTGCTAAAGACTACTGTGAGAAGGTATTTGATAGATTGTTTGTTTGAATGTGATGAGGGTGATTTACCAGATGAGGCACTGAGAGCCATTGCTTTGTGCAATCAGATGCCGCTGCGTCAAAAAATTGATTTCACAGAACAAAGGAAGGGTGCAGAGTTAGAAGCTGTACTGAATGTAAGCAGTAGTCTTAGAGCTCTAGTATATCATTGTACAGGAGGCCAAACTGATGATCAGTTAATGAACTGTGAGAGTGAATGCCACAGCGATGAACAAGTGATGAGCTTAGGTTGTGATGACTACAGTTGTGATAATGATTTCGTGCTCACAGAGGGTTACAAAAATTTTGGTCATCAGCAGCATAAAATAGATGAAGCTTGTTCGAGTAGCATGGTCAACCCTGTCAGTGTGAGTGGACATTTCTCGAGTGGAGCTGGTAGTAATATGAAGAAACCTACTTTGCATGAGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGAGATTTGTGATGATGCTGCAATTTTGGCCCACAAGCTTCTAGGGAAAATTCTGGACAACACGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTCTACTTCGCATGGTCCTCAAGCTGCATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAATGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACTCAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGAACTGCTTGTTCATATATATGTCACCATTTTCTTTTGGTTGAACCTGTTAATGTTACACTTATGATACATATACTACTATCCAACATCATT]
[+] EMBL CB630854             [                                   CCGGCCTACGGCAAGCGGCGGCGACGTGAGCAGGGTTGGCCACCAACGGCGGAGCGACGCGCGAGTGCTGCGGGCTGCGGCGAGCGGAAGGCGGCGCACCACGCGCGGGCTGCGGCGGCAGGCCGGCGAGTGTGACTGGGATTGGGCTGTTGGGCGAGCTCGGCTGAC   TTGATGAAGCTCCCCTAATTGAAGAACCACCAACAGTTGCCATAGTCGATGTATTCTGAGACTGATTTCTCTTTCAAGGATGCCAACAAACTGTGCTCTCTTATTCGGAAGCAGCAAGCCCTTGCCAAAAAGAAAAGGAAATGGCTGCGGTCTCTGATTCCAAGGGAAGACGGTCTCATCAAACCTATCAAACGACCCAAGTTTCTAAAAGATGTGTACTTGGCTGAATCATATGTTAGGAGTGATGAGGTTTCTTGTGAGAAAGTCATAGCCCATGTTGAAAAATGTTATGGTTTCCAAAGCGATGGCTACAGCCACCACATTGTTCAGGATGGCCTCCAGCTTTTTAAGTTGCAAAAAGGCAAGGATGGCTCACTCAGTCCACAAGGTCTTGCAGACATGCAACTCATAATAAATAAGTTAAGCAATGAAGCACTTCATTCAGTGGCTAACATCGCCACCCACAATAGGGTTAGTTTTGAGAAGACCAGGCCAGCGATGATAAAGATCATAGAAGACCACCTACCACAATACTTGGCAAACTTGCATGATGAAAATGACATGTCTCAGCTGTCGCACATTTTAACAAATCCATTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_9224#0 CACAAACCAAACCCTAGCGTGGGAAGCGGCGGCGACCGGGCGACGGCAAGCGGCGGCGAC GTGAGCAGGGTTGGCCACCAACGGCGGAGCGACGCGCGAGTGCTGCGGGCTGCGGCGAGC GGAAGGCGGCGCACCACGCGCGGGCTGCGGCGGCAGGCCGGCGAGTGTGACTGGGATTGG GCTGTTGGGCGAGCTCGGCTGACCAGTTGATGAAGCTCCCCTAATTGAAGAACCACCAAC AGTTGCCATAGTCGATGTATTCTGAGACTGATTTCTCTTTCAAGGATGCCAACAAACTGT GCTCTCTTATTCGGAAGCAGCAAGCCCTTGCCAAAAAGAAAAGGAAATGGCTGCGGTCTC TGATTCCAAGGGAAGACGGTCTCATCAAACCTATCAAACGACCCAAGTTTCTAAAAGATG TGTACTTGGCTGAATCATATGTAAGGAGTGATGAGGTTTCTTGTGAGAAAGTCATAGCCC ATGTTGAAAAATGTTATGGTTTCCAAAGCGATGGCTACAGCCACCACATTGTTCAGGATG GCCTCCAGCTTTTTAAGTTGCAAAAAGGCAAGGATGGCTCACTCAGTCCACAAGGTCTTG CAGACATGCAACTCATAATAAATAAGTTAAGCAATGAAGCACTTCATTCAGTGGCTAACA TCGCCACCCACAATAGGGTTAGTTTTGAGAAGACCAGGCCAGCGATGAAAAAGATCATAG AAGACCACCTACCACAATACTTGGCAAACTTGCATGATGAAAATGACATGTCTCAGCTGT CGCACATTTTAACAAATCCATTCAGTTACCGATCTAATTCCTTAAACATTACAACACCTA TTTCACCGAAAATGCTATCATCCATCGACCAGGCATTAAATGTACTCAGTACACTGACTA TACAAGCTCTTGTTGCAATGAAAAGGAAGCTTGATGAAGTATCTTTCACCCCAAAATTTA GTTTTGTACCTCGTATAAGCAGAAAGGCGCATATGGTTACTGTGATTAGGAAAGAGTGCA ATAAGATGATTTCAAGGGTTGGGGAAAGTGGTGACCTGCCAAAGAATTTGGCAAAAGCAC TGTCAGTGGTGAATCTGTATAGGAAGCAAGAGTTGAAATGCATGGACATCTCACAGGCAG AGTTCTTTCCATTCTCAAAAAAAGCAATTTTCTTGCAAAATGATGTCCTGAATGCTATTT GGTCAATTCAAAAGTTGAAGAAAGGGGATCTTAAATTGCTGCGTGCCATACTATGTCAAG GTTCAAACGATGAGATGCTGCTAAAGACTACTGTGAGAAGGTATTTGATAGATTGTTTGT TTGAATGTGATGAGGGTGATTTACCAGATGAGGCACTGAGAGCCATTGCTTTGTGCAATC AGATGCCGCTGCGTCAAAAAATTGATTTCACAGAACAAAGGAAGGGTGCAGAGTTAGAAG CTGTACTGAATGTAAGCAGTAGTCTTAGAGCTCTAGTATATCATTGTACAGGAGGCCAAA CTGATGATCAGTTAATGAACTGTGAGAGTGAATGCCACAGCGATGAACAAGTGATGAGCT TAGGTTGTGATGACTACAGTTGTGATAATGATTTCGTGCTCACAGAGGGTTACAAAAATT TTGGTCATCAGCAGCATAAAATAGATGAAGCTTGTTCGAGTAGCATGGTCAACCCTGTCA GTGTGAGTGGACATTTCTCGAGTGGAGCTGGTAGTAATATGAAGAAACCTACTTTGCATG AGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGAGATTT GTGATGATGCTGCAATTTTGGCCCACAAGCTTCTAGGGAAAATTCTGGACAACACGTTGC TTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTCTACTTCGCATG GTCCTCAAGCTGCATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAATGAGTATG GTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACTCAATGGTG TTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGAACTGCTTGTTCATATATATG TCACCATTTTCTTTTGGTTGAACCTGTTAATGTTACACTTATGATACATATACTACTATC CAACATCATT



consensusID : consensus_9224#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence
                              [CAAGTGATGAGCTTAGGTTGTGATGACTACAGTTGTGATAATGATTTCGTGCTCACAGAGGGTTACAAAAATTTTGGTCATCAGCAGCATAAAATAGATGAAGCTTGTTCGAGTAGCATGGTCAACCCTGTCAGTGTGAGTGGACATTTCTCGAGTGGAGCTGGTAGTAATATGAAGAAACCTACATTGCATGAGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGAGATTTGTGATGATGCTGCAATTTTGGCCCACAAGCTTCTAGGGAAAATTCTGGACAACACGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTCTACTTCGCATGGTCCTCAAGAAAAGAACCAAAAAGCTGACATTGTGATTAAAGCTATTGAGAATGTCTTACCGAATCTGCCAAAAAGCTGCATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAATGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACTCAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGAACTGCTTGNTCATATATATGTCANCATTTTTCTTTTGGGTTGAACCCTGGTAATGGTACACTTATGATACATATACTACTATTCAACATCATTTTAACCTCGC]

[+] EMBL CA766906             [CAAGTGATGAGCTTAGGTTGTGATGACTACAGTTGTGATAATGATTTCGTGCTCACAGAGGGTTACAAAAATTTTGGTCATCAGCAGCATAAAATAGATGAAGCTTGTTCGAGTAGCATGGTCAACCCTGTCAGTGTGAGTGGACATTTCTCGAGTGGAGCTGGTAGTAATATGAAGAAACCTACATTGCATGAGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGAGATTTGTGATGATGCTGCAATTTTGGCCCACAAGCTTCTAGGGAAAATTCTGGACAACACGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTCTACTTCGCATGGTCCTCAAGAAAAGAACCAAAAAGCTGACATTGTGATTAAAGCTATTGAGAATGTCTTACCGAATCTGCCAAAAAGCTGCATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAATGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACTCAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGAACTGCTTGNTCATATATATGTCANCATTTTTCTTTTGGGTTGAACCCTGGTAATGGTACACTTATGATACATATACTACTATTCAACATCATTTTAACCTCGC]


>consensus_9224#1 CAAGTGATGAGCTTAGGTTGTGATGACTACAGTTGTGATAATGATTTCGTGCTCACAGAG GGTTACAAAAATTTTGGTCATCAGCAGCATAAAATAGATGAAGCTTGTTCGAGTAGCATG GTCAACCCTGTCAGTGTGAGTGGACATTTCTCGAGTGGAGCTGGTAGTAATATGAAGAAA CCTACATTGCATGAGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGC CTTTCCGAGATTTGTGATGATGCTGCAATTTTGGCCCACAAGCTTCTAGGGAAAATTCTG GACAACACGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGT TCTACTTCGCATGGTCCTCAAGAAAAGAACCAAAAAGCTGACATTGTGATTAAAGCTATT GAGAATGTCTTACCGAATCTGCCAAAAAGCTGCATGGACAAAGTGAGGAGGATGTTGCAT GATGATAAACAATGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCAC TCAAATGAGACTCAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGA ACTGCTTGNTCATATATATGTCANCATTTTTCTTTTGGGTTGAACCCTGGTAATGGTACA CTTATGATACATATACTACTATTCAACATCATTTTAACCTCGC



consensusID : consensus_9224#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence
                              [TGAAGAAACCTCCATTGCATGAGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGAGATTTGTGATGATGCTGCAATTTTGGCCCACAAGCTTCTAGGGAAAATTCTGGACAACACGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTCTACTTCGCATGGTCCTCAAGGTACATTTTGGACCACCATTGAACCTTCATTGTTTTTGTTTTGGTCTTGTTTTGTTTTAGTTTGCAATGCCCTTCAAGGTTCATATGATATATTTGCCATAGATCCTGCAGAAAAGAACCAAAAAGCTGACATTGTGATTAAAGCTATTGAGAATGTCTTACCGAATCTGCCAAAAAGGTCCTTTTTTTCCCTCCACCCCTTCATTGCATATAAACACACTAATACTATATGTTTGTGCAGCTGCATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAATGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACTCAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGAACTGCTTGTTCATATATATGTCACCATTTTCTTTTGGTTGAACCTGTTAATGTTACACTTATGAAAGGTATACTACTATCCAACATC]

[-] EMBL CB630855             [TGAAGAAACCTCCATTGCATGAGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGAGATTTGTGATGATGCTGCAATTTTGGCCCACAAGCTTCTAGGGAAAATTCTGGACAACACGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTCTACTTCGCATGGTCCTCAAGGTACATTTTGGACCACCATTGAACCTTCATTGTTTTTGTTTTGGTCTTGTTTTGTTTTAGTTTGCAATGCCCTTCAAGGTTCATATGATATATTTGCCATAGATCCTGCAGAAAAGAACCAAAAAGCTGACATTGTGATTAAAGCTATTGAGAATGTCTTACCGAATCTGCCAAAAAGGTCCTTTTTTTCCCTCCACCCCTTCATTGCATATAAACACACTAATACTATATGTTTGTGCAGCTGCATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAATGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACTCAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGAACTGCTTGTTCATATATATGTCACCATTTTCTTTTGGTTGAACCTGTTAATGTTACACTTATGAAAGGTATACTACTATCCAACATC]


>consensus_9224#2 TGAAGAAACCTCCATTGCATGAGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCT CCATGGGCCTTTCCGAGATTTGTGATGATGCTGCAATTTTGGCCCACAAGCTTCTAGGGA AAATTCTGGACAACACGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTC TTGATGGTTCTACTTCGCATGGTCCTCAAGGTACATTTTGGACCACCATTGAACCTTCAT TGTTTTTGTTTTGGTCTTGTTTTGTTTTAGTTTGCAATGCCCTTCAAGGTTCATATGATA TATTTGCCATAGATCCTGCAGAAAAGAACCAAAAAGCTGACATTGTGATTAAAGCTATTG AGAATGTCTTACCGAATCTGCCAAAAAGGTCCTTTTTTTCCCTCCACCCCTTCATTGCAT ATAAACACACTAATACTATATGTTTGTGCAGCTGCATGGACAAAGTGAGGAGGATGTTGC ATGATGATAAACAATGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTC ACTCAAATGAGACTCAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATG GAACTGCTTGTTCATATATATGTCACCATTTTCTTTTGGTTGAACCTGTTAATGTTACAC TTATGAAAGGTATACTACTATCCAACATC



consensusID : consensus_9224#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 539
fasta sequence
                              [GTCAACCCCTGCACAGTGCACCCGTGCCGCTTTCCCTTGCTCTTTGCCTGTCGATCCCCCATCTGCCCCTTTTCTAGCAGTTGATGAAGCTCCCGTAACTGAAGAAGAACCACCAA-CAGTTTCCATAATTGATGTATTCTGAGACTGATTTCTCTTTCAAGGATGCCAACAAACTGTGCTCTCTTGTTCGGAAGCAGAAAGCACTTGCCAAAAAGAGAAGGAAATGGCTGCGGTCTCTGATTCCAAGGGAAGACGGTCTCATCAAACCTATCAAACGACCCAAGTTTCTAAAAGATGCGCAAGTGCACCATCTACACCATTCTTGNGGGTTTCAAATTGTACTGATTGGAAGCTTGCTGTCTACTAATGTGATCATGTCTTGTAAACAAATGATCTATTTGTTGCTCATTTCAAAATATTGAATTGTTTTGTAATATCACACCATGGGTACTTTTATGCTTTATTACTGAAGCAACTAAGAACATAAATGGATGATCAGGTGGCATTTCAATATAAAAAAAAAAGAAAAAAAAAAAAAA]

[+] EMBL CF332192             [GTCAACCCCTGCACAGTGCACCCGTGCCGCTTTCCCTTGCTCTTTGCCTGTCGATCCCCCATCTGCCCCTTTTCTAGCAGTTGATGAAGCTCCCGTAACTGAAGAAGAACCACCAA CAGTTTCCATAATTGATGTATTCTGAGACTGATTTCTCTTTCAAGGATGCCAACAAACTGTGCTCTCTTGTTCGGAAGCAGAAAGCACTTGCCAAAAAGAGAAGGAAATGGCTGCGGTCTCTGATTCCAAGGGAAGACGGTCTCATCAAACCTATCAAACGACCCAAGTTTCTAAAAGATGCGCAAGTGCACCATCTACACCATTCTTGNGGGTTTCAAATTGTACTGATTGGAAGCTTGCTGTCTACTAATGTGATCATGTCTTGTAAACAAATGATCTATTTGTTGCTCATTTCAAAATATTGAATTGTTTTGTAATATCACACCATGGGTACTTTTATGCTTTATTACTGAAGCAACTAAGAACATAAATGGATGATCAGGT                                      ]
[-] EMBL CF332193             [                   ACCCGTGCCGCTTTCCCTTGCTCTTTGCCTGTCGATCCCCCATCTGCCCCTTTTTTAGCAGTTGATGAAGCTCCCGTAACTGAAGAAGAACCACCAANCAGTTTCCATAATTGATGTATTTTGAGACTGATTTCTCTTTCAAGGATGCCAACAAACTGTGCTCTCTTGTTCGGAAGCAGAAAGCACTTGCCAAAAAGAGAAGGAAATGGCTGCGGTCTTTGATTCCAAGGGAAGACGGTTTCATCAAACCTATCAAACGACCCAAGTTTTTAAAAGATGCGCAAGTGCACCATTTACACCATTTTTG GGGTTTCAAATTGTACTGATTGGAAGCTTGCTGTCTACTAATGTGATCATGTCTTGTAAACAAATGATCTATTTGTTGCTCATTTCAAAATATTGAATTGTTTTGTAATATCACACCATGGGTACTTTTATGCTTTATTACTGAAGCAACTAAGAACATAAATGGATGATCAGGTGGCATTTCAATATAAAAAAAAAAGAAAAAAAAAAAAAA]


>consensus_9224#3 GTCAACCCCTGCACAGTGCACCCGTGCCGCTTTCCCTTGCTCTTTGCCTGTCGATCCCCC ATCTGCCCCTTTTCTAGCAGTTGATGAAGCTCCCGTAACTGAAGAAGAACCACCAACAGT TTCCATAATTGATGTATTCTGAGACTGATTTCTCTTTCAAGGATGCCAACAAACTGTGCT CTCTTGTTCGGAAGCAGAAAGCACTTGCCAAAAAGAGAAGGAAATGGCTGCGGTCTCTGA TTCCAAGGGAAGACGGTCTCATCAAACCTATCAAACGACCCAAGTTTCTAAAAGATGCGC AAGTGCACCATCTACACCATTCTTGNGGGTTTCAAATTGTACTGATTGGAAGCTTGCTGT CTACTAATGTGATCATGTCTTGTAAACAAATGATCTATTTGTTGCTCATTTCAAAATATT GAATTGTTTTGTAATATCACACCATGGGTACTTTTATGCTTTATTACTGAAGCAACTAAG AACATAAATGGATGATCAGGTGGCATTTCAATATAAAAAAAAAAGAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      CACAAACCAAACCCTAGCGTGGGAAGCGGCGGCGACCGGGCGACGGCAAGCGGCGGCGAC 60
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      GTGAGCAGGGTTGGCCACCAACGGCGGAGCGACGCGCGAGTGCTGCGGGCTGCGGCGAGC 120
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      GGAAGGCGGCGCACCACGCGCGGGCTGCGGCGGCAGGCCGGCGAGTGTGACTGGGATTGG 180
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      GCTGTTGGGCGAGCTCGGCTGACCAGTTGATGAAGCTCCCCTAATTGAAGAACCACCAAC 240
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      AGTTGCCATAGTCGATGTATTCTGAGACTGATTTCTCTTTCAAGGATGCCAACAAACTGT 300
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      GCTCTCTTATTCGGAAGCAGCAAGCCCTTGCCAAAAAGAAAAGGAAATGGCTGCGGTCTC 360
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      TGATTCCAAGGGAAGACGGTCTCATCAAACCTATCAAACGACCCAAGTTTCTAAAAGATG 420
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      TGTACTTGGCTGAATCATATGTAAGGAGTGATGAGGTTTCTTGTGAGAAAGTCATAGCCC 480
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      ATGTTGAAAAATGTTATGGTTTCCAAAGCGATGGCTACAGCCACCACATTGTTCAGGATG 540
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      GCCTCCAGCTTTTTAAGTTGCAAAAAGGCAAGGATGGCTCACTCAGTCCACAAGGTCTTG 600
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      CAGACATGCAACTCATAATAAATAAGTTAAGCAATGAAGCACTTCATTCAGTGGCTAACA 660
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      TCGCCACCCACAATAGGGTTAGTTTTGAGAAGACCAGGCCAGCGATGAAAAAGATCATAG 720
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      AAGACCACCTACCACAATACTTGGCAAACTTGCATGATGAAAATGACATGTCTCAGCTGT 780
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      CGCACATTTTAACAAATCCATTCAGTTACCGATCTAATTCCTTAAACATTACAACACCTA 840
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      TTTCACCGAAAATGCTATCATCCATCGACCAGGCATTAAATGTACTCAGTACACTGACTA 900
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      TACAAGCTCTTGTTGCAATGAAAAGGAAGCTTGATGAAGTATCTTTCACCCCAAAATTTA 960
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      GTTTTGTACCTCGTATAAGCAGAAAGGCGCATATGGTTACTGTGATTAGGAAAGAGTGCA 1020
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      ATAAGATGATTTCAAGGGTTGGGGAAAGTGGTGACCTGCCAAAGAATTTGGCAAAAGCAC 1080
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      TGTCAGTGGTGAATCTGTATAGGAAGCAAGAGTTGAAATGCATGGACATCTCACAGGCAG 1140
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      AGTTCTTTCCATTCTCAAAAAAAGCAATTTTCTTGCAAAATGATGTCCTGAATGCTATTT 1200
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      GGTCAATTCAAAAGTTGAAGAAAGGGGATCTTAAATTGCTGCGTGCCATACTATGTCAAG 1260
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      GTTCAAACGATGAGATGCTGCTAAAGACTACTGTGAGAAGGTATTTGATAGATTGTTTGT 1320
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      TTGAATGTGATGAGGGTGATTTACCAGATGAGGCACTGAGAGCCATTGCTTTGTGCAATC 1380
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      AGATGCCGCTGCGTCAAAAAATTGATTTCACAGAACAAAGGAAGGGTGCAGAGTTAGAAG 1440
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      CTGTACTGAATGTAAGCAGTAGTCTTAGAGCTCTAGTATATCATTGTACAGGAGGCCAAA 1500
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      -----------------------------------------------CAAGTGATGAGCT 13
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      CTGATGATCAGTTAATGAACTGTGAGAGTGAATGCCACAGCGATGAACAAGTGATGAGCT 1560
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      TAGGTTGTGATGACTACAGTTGTGATAATGATTTCGTGCTCACAGAGGGTTACAAAAATT 73
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      TAGGTTGTGATGACTACAGTTGTGATAATGATTTCGTGCTCACAGAGGGTTACAAAAATT 1620
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      TTGGTCATCAGCAGCATAAAATAGATGAAGCTTGTTCGAGTAGCATGGTCAACCCTGTCA 133
consensus_9224#2      ------------------------------------------------------------
consensus_9224#0      TTGGTCATCAGCAGCATAAAATAGATGAAGCTTGTTCGAGTAGCATGGTCAACCCTGTCA 1680
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      GTGTGAGTGGACATTTCTCGAGTGGAGCTGGTAGTAATATGAAGAAACCTACATTGCATG 193
consensus_9224#2      ---------------------------------------TGAAGAAACCTCCATTGCATG 21
consensus_9224#0      GTGTGAGTGGACATTTCTCGAGTGGAGCTGGTAGTAATATGAAGAAACCTACTTTGCATG 1740
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      AGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGA--GAT 251
consensus_9224#2      AGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGA--GAT 79
consensus_9224#0      AGGTTGTTGGTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGA--GAT 1798
consensus_9224#3      -----GTCAACCCCTGCACAGTGCACCCGTGCCGCTTTCCCTTGCTCTTTGCCTGTCGAT 55
                           **     **     **** *     *  *     ** **  * ** **    ***

consensus_9224#1      TTGTGATGATGCTGCAATTTTGGCCCAC----AAGCTTCTAGGGAAAATTCTGGACAACA 307
consensus_9224#2      TTGTGATGATGCTGCAATTTTGGCCCAC----AAGCTTCTAGGGAAAATTCTGGACAACA 135
consensus_9224#0      TTGTGATGATGCTGCAATTTTGGCCCAC----AAGCTTCTAGGGAAAATTCTGGACAACA 1854
consensus_9224#3      CCCCCATC-TGCCCCTTTTCTAGCAGTTGATGAAGCTCCCGTAACTGAAGAAGAACCACC 114
                           **  ***  *  ** * **        ***** *        *    * ** ** 

consensus_9224#1      CGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTCTACTT 367
consensus_9224#2      CGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTCTACTT 195
consensus_9224#0      CGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTCTACTT 1914
consensus_9224#3      AACAGTTTCCATAATTGATGTATTCTGAG---ACTGATTTCTCTTTCAAGGATGCCAACA 171
                          * ** ** **   * *     **      * *  * **** *  * * * * *   

consensus_9224#1      CGCATGGTCCTCAAG--------------------------------------------- 382
consensus_9224#2      CGCATGGTCCTCAAGGTACATTTTGGACCACCATTGAACCTTCATTGTTTTTGTTTTGGT 255
consensus_9224#0      CGCATGGTCCTCAAG--------------------------------------------- 1929
consensus_9224#3      AACTGTGCTCTCTTGTTCGGAAGCAGAAAGCACTTG------------------------ 207
                        *   *  ***  *                                             

consensus_9224#1      ------------------------------------------------------------
consensus_9224#2      CTTGTTTTGTTTTAGTTTGCAATGCCCTTCAAGGTTCATATGATATATTTGCCATAGATC 315
consensus_9224#0      ------------------------------------------------------------
consensus_9224#3      ------------------------------------------------------------
                                                                                  

consensus_9224#1      ------AAAAGAACCAAAAAGCTGACAT-TGTGATTAAAGCTATTGAGAATGTCTTACCG 435
consensus_9224#2      CTGCAGAAAAGAACCAAAAAGCTGACAT-TGTGATTAAAGCTATTGAGAATGTCTTACCG 374
consensus_9224#0      ------------------------------------------------------------
consensus_9224#3      -CCAAAAAGAGAAGGAAATGGCTGCGGTCTCTGATTCCAA--GGGAAGACGGTCTCATCA 264
                                                                                  

consensus_9224#1      AATCTGCCAAAAAG---------------------------------------------- 449
consensus_9224#2      AATCTGCCAAAAAGGTCCTTTTTTTCCCTCCACCCCTTCATTGCATATAAACACACTAAT 434
consensus_9224#0      ---CTGC----------------------------------------------------- 1933
consensus_9224#3      AACCTATCAAACGACCCAAGTTTCTAAAAGATGCGCAAGTGCAC---------CATCTAC 315
                         **                                                       

consensus_9224#1      -----------------CTGCATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAA 492
consensus_9224#2      ACTATATGTTTGTGCAGCTGCATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAA 494
consensus_9224#0      ---------------------ATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAA 1972
consensus_9224#3      ACCATTCTTGNGGGTTTCAAATTGTACTGATTG-GAAGCTTGCTGTCTACTAATG----- 369
                                            ** **  * ** * **  ** **  *  * **      

consensus_9224#1      TGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACT 552
consensus_9224#2      TGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACT 554
consensus_9224#0      TGAGTATGGTCTGCAAAAATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACT 2032
consensus_9224#3      TGATCATGTCTTGTAAACAAATGATCTATTTGTTGC---TCATTTCAAA-ATATTGAATT 425
                      ***  ***   ** *** * *     * **** ***   *** ****   * **   * *

consensus_9224#1      CAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGAACTGCTT-GNTC 611
consensus_9224#2      CAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGAACTGCTT-GTTC 613
consensus_9224#0      CAATGGTGTTGCCTTTTGAAGAGCAGATGGTAGTCTGATTGAAATGGAACTGCTT-GTTC 2091
consensus_9224#3      GTTTTGTAATATCACACCATGGGTACTTTTATGCTTTATT--ACTGAAGCAACTAAGAAC 483
                         * **  *  *     * * * *  *    *  * ***  * ** * *  **  *  *

consensus_9224#1      ATATATATGTCANCATTTTTCTTTTGGGTTGAACCCTGGTAATGGTACACTTATGATACA 671
consensus_9224#2      ATATATATGTCACCATTTTCTTTT--GGTTGAACC-TGTTAATGTTACACTTATGAAAGG 670
consensus_9224#0      ATATATATGTCACCATTTTCTTTT--GGTTGAACC-TGTTAATGTTACACTTATGATACA 2148
consensus_9224#3      ATAAATGGATGATCAGGTGGCATTTCAATATAAAA--AAAAAAGAAAAAAAAAAAAAA-- 539
                      *** **   * * **  *    **    *  **       ** *  * *   *  * *  

consensus_9224#1      TATACTACTATTCAACATCATTTTAACCTCGC 703
consensus_9224#2      TATACTACTATCCAACATC------------- 689
consensus_9224#0      TATACTACTATCCAACATCATT---------- 2170
consensus_9224#3      --------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)