These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 845 fasta sequence [CGGTCTACTAGACTCACACACTAGCTTTAG-TTAGCTAAAAGAAGAAAAAGAAAAGAGAGGCACAATAATAGGTTAGGCATGGCGGA-CAGCTGGGCGGCGTGGGCAG-CCGCAGCTAAGCCTGAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGNCGCCGATGGTGCTCCCCATCTATCCCTCGGCGTGGGCGGCGC--AGGAG-CTGGATCTGCTGCTG-AGGTGGGCATAGGCGGTGGCGGTNGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGATGATGAAGAACAGGGAGTCGGCGCTGCGTTCCAGGGCAAGGAAGAGGGCGTATGTGCAGGAGCTGGAGAAGGAAGTTCGCCGGCTGGTGAATGAGAATCTCAAGCTCAAGAGGCAC-TGCAAACAACTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGACTCGGAAAAAAAAAAAA] [+] EMBL C73649 [CGGTCTACTAGACTCACACACTAGCTTTAG TTAGCTAAAAGAAGAAAAAGAAAAGAGAGGCACAATAATAGGTTAGGCATGGCGGA CAGCTGGGCGGCGTGGGCAG CCGCAGCTAAGCCTGAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGNCGCCGATGGTGCTCCCCATCTATCCCTCGGCGTGGGCGGCGC AGGAGNCTGGATCTGCTGCTG AGGTGGGCATAGGCGGTGGCGGTNGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGATGATGAAGAACAGGGAGTCGGCG TTCGTTCCAGGGCAA ] [+] EMBL AK061086 [ GTCTACTAGACTCACACACTAGCTTTAGCTTAGCTAAAAGAAGAAAAAGAAAAGAGAGGCACAATAATAGGTTAGGCATGGCGGAGCAGCTGGGCGGCGTGGGCAGCCCGCAGCTAAGCCTGAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACTAGCGCCGCCGATGGTGCTCCCCATCTATCCCTCGGCGTGGGCGGCGCCGAGGAG CTGGATCTGCTGCTGCAGGTGGGCATAGGCGGTGGCGGTGGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGATGATGAAGAACAGGGAGTCGGCGCTGCGCTCCAGGGCAAGGAAGAGGGCGTATGTGCAGGAGCTGGAGAAGGAAGTTCGCCGGCTGGTGAATGAGAATCTCAAGCTCAAGAGGCAC TGCAAACAACTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGACTCGG ] [+] EMBL CA764933 [ AGGGGAGGAGCGCAAGACCCTCCGNATGATGAAGAACAGGGAGTCGGCGCTGCGTTCCAGGGCAAGGAAGAGGGCGTATGTGCANGAGCTGGAGAAGGAAGTTCGCCGGCTGGTGAATGAGAATCTCAAGCTCAAGAGGCACGTGCAAACAACTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGATGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGNCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCAGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGC C GCAAGACCCAAATTAATATAAATTGTATGAGAC ] [+] EMBL C99454 [ GAGAATCTCAAGCTCAAGAGGCAC TGCAAACAACTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [CTAATAAGTCGATTCATCACTTTACATTTCCAATCCATCTTTTATGTATATATATGTATGTGCATAGAATCCTTTGATTTTACTACAGGTATATTGTAATAATAATGCACTATATCCTATGCAGCTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGACTAAAAAAA] [-] EMBL CF332860 [CTAATAAGTCGATTCATCACTTTACATTTCCAATCCATCTTTTATGTATATATATGTATGTGCATAGAATCCTTTGATTTTACTACAGGTATATTGTAATAATAATGCACTATATCCTATGCAGCTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGACTAAAAAAA] consensusID : consensus_9230#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [AGTCTACTAGACTACACACTAGCCTTAGCTTAGCTAAAAGAAGAAAAAGAAAAGAGAGGCACAATAATAGGTTAGGCATGGCGGAGCAGCTGGGCGGCGTGGGCAGCCCGCAGCTAAGCCTGAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGCCGCCGATGGTGCTCCCCATCTATCCCTCGGCGTGGGCGGCGCCGAGGAGCTGGATCTGCTGCTGCAGGTGGGCATAGGCGGTGGCGGTGGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGATGATGAAGAACAGGNGAGTCGGCGCTGCGCTCCAGGGCAAGGAGGAGGGTAAGAACCTCTAATCCATTTCCTCATACTATCTAGTATAGTACTAGCTACTCTATTAATTAATCTCTCGGATGGATAGATGGAGTAGTATTTTGGTTCCACACTAGTACTAGTTAGCTAATTGCATGAGCTTAATTATGTGCGCGGATGGATGTATAGGCGTATG] [+] EMBL CF332859 [AGTCTACTAGACTACACACTAGCCTTAGCTTAGCTAAAAGAAGAAAAAGAAAAGAGAGGCACAATAATAGGTTAGGCATGGCGGAGCAGCTGGGCGGCGTGGGCAGCCCGCAGCTAAGCCTGAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGCCGCCGATGGTGCTCCCCATCTATCCCTCGGCGTGGGCGGCGCCGAGGAGCTGGATCTGCTGCTGCAGGTGGGCATAGGCGGTGGCGGTGGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGATGATGAAGAACAGGNGAGTCGGCGCTGCGCTCCAGGGCAAGGAGGAGGGTAAGAACCTCTAATCCATTTCCTCATACTATCTAGTATAGTACTAGCTACTCTATTAATTAATCTCTCGGATGGATAGATGGAGTAGTATTTTGGTTCCACACTAGTACTAGTTAGCTAATTGCATGAGCTTAATTATGTGCGCGGATGGATGTATAGGCGTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9230#0 CGGTCTACTAGACTCACACACTAGCTTTAGTTAGCTAAAAGAAGAAAAAGAAAAGAGAGG 60 consensus_9230#1 ------------------------------------------------------------ consensus_9230#2 ------------------------------------------------------------ consensus_9230#0 CACAATAATAGGTTAGGCATGGCGGACAGCTGGGCGGCGTGGGCAGCCGCAGCTAAGCCT 120 consensus_9230#1 ------------------------------------------------------------ consensus_9230#2 ------------------------------------------------------------ consensus_9230#0 GAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGNCGCCGATGGTGC 180 consensus_9230#1 ------------------------------------------------------------ consensus_9230#2 ------------------------------------------------------------ consensus_9230#0 TCCCCATCTATCCCTCGGCGTGGGCGGCGCAGGAGCTGGATCTGCTGCTGAGGTGGGCAT 240 consensus_9230#1 ------------------------------------------------------------ consensus_9230#2 ------------------------------------------------------------ consensus_9230#0 AGGCGGTGGCGGTNGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGAT 300 consensus_9230#1 --------------------------------------------------CTAATAAGTC 10 consensus_9230#2 --------------------------------------------------------AGTC 4 * consensus_9230#0 GATGA-AGAACAGGGAGTCGGCGCTGCGTTCCAGGGCAAGGAAGAGGGCGTATGTGCAGG 359 consensus_9230#1 GATTC-ATCACTTTACATTTCCAATCCATCTTT---TATGTATATATATGTATGTGCA-- 64 consensus_9230#2 TACTAGACTACACACTAGCCTTAGCTTAGCTAAAA-GAAGAAAAAGAAAAGAGAGGCACA 63 * * ** * * * * *** consensus_9230#0 AGCTGGAGAAGGAAGTTCGCCGGCTGGTGAATGAGAATCTCAAGCTCAAGAGGCACTGCA 419 consensus_9230#1 --TAGAATCCTTTGATTTTACTACAGGTATATTGTAATAATAA---TGCACTATATCCTA 119 consensus_9230#2 ATAATAGGTTAGGCATGGCGGAGCAGCTGGGCGGCGTGGGCAGCC-CGCAGCTAAGCCTG 122 * * * * * * consensus_9230#0 AACAACTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCC-TACCAACAA-GCAGAGTTC 477 consensus_9230#1 TGCAGCTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCC-TACCAACAA-GCAGAGTTC 177 consensus_9230#2 AGCAGCTGCAGCT---CCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGCCGCCGATGGT 179 ** ** ** * ** * ****** * ***** * ** ** consensus_9230#0 CCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAAT-TAATTA 536 consensus_9230#1 CCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAAT-TAATTA 236 consensus_9230#2 GCTCCCCATCTATCCCTCGGCGTGGGCGGCGCCGAGGAGCTGGATCTGCTGCTGCAGGTG 239 * ** * * ** * ** * * * ** **** * * * * * * consensus_9230#0 AGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCT 596 consensus_9230#1 AGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCT 296 consensus_9230#2 GGCATAGGCGGTGGCGGTGGCGGCGGCGGCGACGAGGAAGAGGA---GGAGCGCAAGACC 296 ******** * * *** ** * * *** * * * * * consensus_9230#0 GTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTG 656 consensus_9230#1 GTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTG 356 consensus_9230#2 ATCCGGATGATGAAGAACAGGNGAGTCGGCG-CTGCGCTCCAGGGCAAGGAGGAGGGTAA 355 *** * * * * * ** * * * ** * * ** * consensus_9230#0 G--CTTTCCATGCATTCCG--GTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCA 712 consensus_9230#1 G--CTTTCCATGCATTCCG--GTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCA 412 consensus_9230#2 GAACCTCTAATCCATTTCCTCATACTATCTA-GTATAGTACTA-GCTACTCTATTAATTA 413 * * * ** **** * ** ** ** *** ** * * **** * * ** * consensus_9230#0 TCCGCTACACATGGATGCATACAT--GCATGCTTAATTGTTTGTGTCACCGGCTAACTT- 769 consensus_9230#1 TCCGCTACACATGGATGCATACAT--GCATGCTTAATTGTTTGTGTCACCGGCTAACTT- 469 consensus_9230#2 ATCTCT-CGGATGGATAGATGGAGTAGTATTTTGGTTCCACACTAGTACTAGTTAGCTAA 472 * ** * ****** ** * * ** * * * ** * ** ** consensus_9230#0 TTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGAC 829 consensus_9230#1 TTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGAC 529 consensus_9230#2 TTGCATGAGCTTAATTATGTGC--GCGGATGGATGTATAGGCGTATG------------- 517 ****** *** ** *** ** * ** * * *** consensus_9230#0 TCGGAAAAAAAAAAAA 845 consensus_9230#1 TAAAAAAA-------- 537 consensus_9230#2 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||