These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1131 fasta sequence [CAAAAGAAGCCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGAGGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGA-GGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTTCTACACCTTTGTTTGGGGTTTGCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCA-TTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCA-CAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACA-CTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTATTCAAGTTGAAATTTATTTGTAGTTACCAGGAAAAA] [+] EMBL CF336433 [CAAAAGAAGCCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCT CCCGG CGTCGCGGAGGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGAGGGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTT ] [+] EMBL AU162704 [ CCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGC GCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGAGGCGCGGAGGCG CGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGA GGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTTCTACACCTTTGTTTGGGGTTTGCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGG AGATACCACAG CTTGTAATTGAGAAGGATAGCNTCCCACATGATGNCCTGGga ] [+] EMBL AK105178 [ CAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGAGGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGA GGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTTCTACACCTTTGTTTGGGGTTTGCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCA TTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCA CAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACA CTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTATTCAAGTTGAA ] [-] EMBL CF336434 [ AAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACGGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATCATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCA TTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCA CAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACA CTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTATTCAAGTTGAAATTTATTTGTAGTTACCAGGAAAAA] [+] EMBL BQ907526 [ AAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCACTTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCACCAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACACCTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTAaaaaaaaaa ] consensusID : consensus_9238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCTGGCACCCCTCCAAGATTTCAGGATTATCATTGCAAACAGTCCNAGATCTTGGACCCTTCTACACCTTTGTTTGGGGTTTGNCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCCCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTNTCTCAAAAAAAAAAAAAAAAAA] [+] EMBL AU056641 [CCTGGCACCCCTCCAAGATTTCAGGATTATCATTGCAAACAGTCCNAGATCTTGGACCCTTCTACACCTTTGTTTGGGGTTTGNCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCCCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTNTCTCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9238#0 CAAAAGAAGCCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGAT 60 consensus_9238#1 ------------------------------------------------------------ consensus_9238#0 GGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGA 120 consensus_9238#1 ------------------------------------------------------------ consensus_9238#0 GGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAAC 180 consensus_9238#1 ------------------------------------------------------------ consensus_9238#0 TCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATT 240 consensus_9238#1 ------------------------------------------------------------ consensus_9238#0 TGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCAC 300 consensus_9238#1 ------------------------------------------------------------ consensus_9238#0 GTATAATTTATGCCAGTACATGGGTGAGGTGGGAGCTAACTTTGAGGTGTACCGCAATGA 360 consensus_9238#1 ------------------------------------------------------------ consensus_9238#0 TGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGG 420 consensus_9238#1 ------------------------------------------------------------ consensus_9238#0 CCCTGGCACACCTC-AAGATT-CAGGAATATCATTGCAAACAGTTCAAGATCTTGGACC- 477 consensus_9238#1 -CCTGGCACCCCTCCAAGATTTCAGGATTATCATTGCAAACAGTCCNAGATCTTGGACCC 59 ******** **** ****** ***** **************** * ************ consensus_9238#0 TTCTACACCTTTGTTTGGGGTTTGC-ATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAG 536 consensus_9238#1 TTCTACACCTTTGTTTGGGGTTTGNCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAG 119 ************************ ********************************** consensus_9238#0 GGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATG 596 consensus_9238#1 GGAAGGTTGTTCGTTCCCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATG 179 **************** ******************************************* consensus_9238#0 AGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGAT 656 consensus_9238#1 AGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGAT 239 ************************************************************ consensus_9238#0 ACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTT 716 consensus_9238#1 ACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTT 299 ************************************************************ consensus_9238#0 GGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTG 776 consensus_9238#1 GGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTG 359 ************************************************************ consensus_9238#0 TGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCA 836 consensus_9238#1 TGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCA 419 ************************************************************ consensus_9238#0 TCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGG 896 consensus_9238#1 TCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGG 479 ************************************************************ consensus_9238#0 TTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCC 956 consensus_9238#1 TTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCC 539 ************************************************************ consensus_9238#0 TAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTC 1016 consensus_9238#1 TAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTC 599 ************************************************************ consensus_9238#0 TTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTA 1076 consensus_9238#1 TTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTN 659 *********************************************************** consensus_9238#0 TCTCAGGCTCACATTTTTATTCAAGTTGAAATTTATTTGTAGTTACCAGGAAAAA 1131 consensus_9238#1 TCTCAAAAAAAAA---------AAAAAAAAA------------------------ 681 ***** * * ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||