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Oryza sativa
cluster # 9238 cluster # 9238       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9238#0 length = 1131 sequences # 5  
consensus_9238#1 length = 681 sequences # 1  

consensusID : consensus_9238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1131
fasta sequence
                              [CAAAAGAAGCCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGAGGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGA-GGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTTCTACACCTTTGTTTGGGGTTTGCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCA-TTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCA-CAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACA-CTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTATTCAAGTTGAAATTTATTTGTAGTTACCAGGAAAAA]

[+] EMBL CF336433             [CAAAAGAAGCCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCT CCCGG CGTCGCGGAGGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGAGGGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU162704             [         CCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGC GCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGAGGCGCGGAGGCG CGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGA GGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTTCTACACCTTTGTTTGGGGTTTGCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGG AGATACCACAG CTTGTAATTGAGAAGGATAGCNTCCCACATGATGNCCTGGga                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK105178             [          CAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGATGGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGAGGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAACTCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATTTGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCACGTATAATTTATGCCAGTACATGGGTGA GGTGGGAGCTAACTTTGAGGTGTACCGCAATGATGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGGCCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTTCTACACCTTTGTTTGGGGTTTGCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCA TTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCA CAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACA CTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTATTCAAGTTGAA                         ]
[-] EMBL CF336434             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACGGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATCATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCA TTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCA CAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACA CTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTATTCAAGTTGAAATTTATTTGTAGTTACCAGGAAAAA]
[+] EMBL BQ907526             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCACTTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCACCAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACACCTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACATTTTTAaaaaaaaaa                           ]


>consensus_9238#0 CAAAAGAAGCCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGAT GGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGA GGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAAC TCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATT TGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCAC GTATAATTTATGCCAGTACATGGGTGAGGTGGGAGCTAACTTTGAGGTGTACCGCAATGA TGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGG CCCTGGCACACCTCAAGATTCAGGAATATCATTGCAAACAGTTCAAGATCTTGGACCTTC TACACCTTTGTTTGGGGTTTGCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAA GGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGA GAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCA CAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGAC AGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCA GTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAA GATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGGTTCT GGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCCTAAA AAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGG TTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTC AGGCTCACATTTTTATTCAAGTTGAAATTTATTTGTAGTTACCAGGAAAAA



consensusID : consensus_9238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence
                              [CCTGGCACCCCTCCAAGATTTCAGGATTATCATTGCAAACAGTCCNAGATCTTGGACCCTTCTACACCTTTGTTTGGGGTTTGNCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCCCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTNTCTCAAAAAAAAAAAAAAAAAA]

[+] EMBL AU056641             [CCTGGCACCCCTCCAAGATTTCAGGATTATCATTGCAAACAGTCCNAGATCTTGGACCCTTCTACACCTTTGTTTGGGGTTTGNCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGGGAAGGTTGTTCGTTCCCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTCTTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTNTCTCAAAAAAAAAAAAAAAAAA]


>consensus_9238#1 CCTGGCACCCCTCCAAGATTTCAGGATTATCATTGCAAACAGTCCNAGATCTTGGACCCT TCTACACCTTTGTTTGGGGTTTGNCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAGG GAAGGTTGTTCGTTCCCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGA GGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATA CCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTTG GACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGT GCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCAT CAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGGT TCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCCT AAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTCT TGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTNT CTCAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9238#0      CAAAAGAAGCCAAAAACTTGATCAAATTTCTGAGCAACTCCGCCACTCTTCTCCTCCGAT 60
consensus_9238#1      ------------------------------------------------------------
                                                                                  

consensus_9238#0      GGCCACCGCCGCGCGGCTCCTCCCCAAGATCCAGTCCCCCGCCTCCCCGGCCGTCGCGGA 120
consensus_9238#1      ------------------------------------------------------------
                                                                                  

consensus_9238#0      GGCGCGGAGGCGCCGCCCCTCCAGTCTCCGATTAGGAGTTACTAGTGGACCCGCAAGAAC 180
consensus_9238#1      ------------------------------------------------------------
                                                                                  

consensus_9238#0      TCTGAAGCAAAAGCTTGTTGCTAAGAGTGCTGTTTCTGTGGTGGAAGGTGAAAACGCATT 240
consensus_9238#1      ------------------------------------------------------------
                                                                                  

consensus_9238#0      TGATGGAGTAAAGCAAGATACTAGACCAATCATAGTTATAGATAACTACGATAGCTTCAC 300
consensus_9238#1      ------------------------------------------------------------
                                                                                  

consensus_9238#0      GTATAATTTATGCCAGTACATGGGTGAGGTGGGAGCTAACTTTGAGGTGTACCGCAATGA 360
consensus_9238#1      ------------------------------------------------------------
                                                                                  

consensus_9238#0      TGATATCACCGTGGAAGAAATTAAGAAGATTTCTCCTAGAGGAATACTCATCTCCCCTGG 420
consensus_9238#1      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CCCTGGCACACCTC-AAGATT-CAGGAATATCATTGCAAACAGTTCAAGATCTTGGACC- 477
consensus_9238#1      -CCTGGCACCCCTCCAAGATTTCAGGATTATCATTGCAAACAGTCCNAGATCTTGGACCC 59
                       ******** **** ****** ***** **************** * ************ 

consensus_9238#0      TTCTACACCTTTGTTTGGGGTTTGC-ATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAG 536
consensus_9238#1      TTCTACACCTTTGTTTGGGGTTTGNCATGGGTTTGCAGTGTATTGGGGAGGCATTTGGAG 119
                      ************************  **********************************

consensus_9238#0      GGAAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATG 596
consensus_9238#1      GGAAGGTTGTTCGTTCCCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATG 179
                      **************** *******************************************

consensus_9238#0      AGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGAT 656
consensus_9238#1      AGGAGAAACTTGATGGAACACTGTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGAT 239
                      ************************************************************

consensus_9238#0      ACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTT 716
consensus_9238#1      ACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATGCCCTGGAAATTACTGCTT 299
                      ************************************************************

consensus_9238#0      GGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTG 776
consensus_9238#1      GGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTG 359
                      ************************************************************

consensus_9238#0      TGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCA 836
consensus_9238#1      TGCAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCA 419
                      ************************************************************

consensus_9238#0      TCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGG 896
consensus_9238#1      TCAAGATTATTGAAGGCTACGAGGCCTTGAATTGCTTACCGTGATCCATTTGAGTCGAGG 479
                      ************************************************************

consensus_9238#0      TTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCC 956
consensus_9238#1      TTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGTAAATCATATTAAATAGTCC 539
                      ************************************************************

consensus_9238#0      TAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTC 1016
consensus_9238#1      TAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTC 599
                      ************************************************************

consensus_9238#0      TTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTA 1076
consensus_9238#1      TTGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTN 659
                      *********************************************************** 

consensus_9238#0      TCTCAGGCTCACATTTTTATTCAAGTTGAAATTTATTTGTAGTTACCAGGAAAAA 1131
consensus_9238#1      TCTCAAAAAAAAA---------AAAAAAAAA------------------------ 681
                      *****     * *         **    ***                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)