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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1290 fasta sequence
[TAAAAGACATGGCATCTCAACAATACTCCTGATTTTCTACTACTGATTTTCCCTTCGTCAAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGAGCAGAGCATCAGGCGCGTGTGGATAGCCGGAGGACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGT-CGTCGCCGACGT-GGTCTCCGCCGCCGTCAAGGAAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGAT-GGGGTTGTCAAGCGGGAAGACCTC-TTCATCACCTNCAAGATA-TGGTGCTGACTGCTGCTGTCTTGTTCCTTCTATTGACCGACCTCAACTTCTGAACGCTACTAGTAGTGCAAGTTTATTCTGCTATTTCGAATTATGTTCTATCCCTTCCTCTTGAAGACGTCCCAAACTCTGCAGGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCAGAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGATTCAGGCAAAGCTCGCGCGATCGGCGTGAGCAATTTCTCCTCCAAGAAGCTTGGCGATCTGCTCTGCGTCGCCCGCGTCCCTCCGGCCGTTGATCAGGTCGAGTGCCACCCGGGCTGGCAGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTAGGAAGAACTCCGGCTCAGGTTGCTCTGCGCTGGGGTCTTCAGCAGGGTCAGAGTGTGCTTCCCAAGAGCGTCAGTGAGGCGAGGTTGAAGGAGAACATGGATCTGTTTGGTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATCTAAAAGAATGGAAATCACCTATGTGAAACAAAATGTGCCATTACTGTAAAAGAACGATGAAAAATAACAGGCATTTCACAACAAAAAAAAA]
[+] EMBL AU100962 [TAAAAGACATGGCATCTCAACAATACTCCTGATTTTCTACTACTGATTTTCCCTTCGTCAAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGAGCAGAGCATCAGGCGCGTGTGGATAGCCGGAGGACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGT CGTCGCCGACGT GGTCTCCGCCGCCGTCAAGGAAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGAT GGGGTTGTCAAGCGGGAAGACCTC TTCATCAACTNCAAGATA TNGT ]
[+] EMBL AK100718 [ TTTTCCCTTCGTCAAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGAGCAGAGCATCAGGCGCGTGTGGATAGCCGGAGGACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGT CGTCGCCGACGT GGTCTCCGCCGCCGTCAAGGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGAT GGGGTTGTCAAGCGGGAAGACCTC TTCATCACCTCCAAGATA TGGTGCTGACTGCTGCTGTCTTGTTCCTTCTATTGACCGACCTCAACTTCTGAACGCTACTAGTAGTGCAAGTTTATTCTGCTATTTCGAATTATGTTCTATCCCTTCCTCTTGAAGACGTCCCAAACTCTGCAGGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCAGAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGATTCAGGCAAAGCTCGCGCGATCGGCGTGAGCAATTTCTCCTCCAAGAAGCTTGGCGATCTGCTCTGCGTCGCCCGCGTCCCTCCGGCCGTTGATCAGGTCGAGTGCCACCCGGGCTGGCAGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTAGGAAGAACTCCGGCTCAGGTTGCTCTGCGCTGGGGTCTTCAGCAGGGTCAGAGTGTGCTTCCCAAGAGCGTCAGTGAGGCGAGGTTGAAGGAGAACATGGATCTGTTTGGTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATCTAAAAGAATGGAAATCACCTATGTGAAACAAAATGTGCCATTACTGTAAAAGAACGATGAAAAATAACA ]
[+] EMBL C28822 [ GCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCNG GACAGAGCAGAG ATCAGGCGCGTGTGGATAGCCGGA GACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACC CGTNCGTCG CAACGTNGGTCTCCGCCGCCGTCAAGGAGGTGTACCGGCACATAGACTGCGCGCCG TGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTNAAGAAGCTCTTCGATGATGGGGGTTGTCAAGCGGGAAGACCTCTTTCATCACCTNCAAGATATTGGTtcag ]
[+] EMBL AU100963 [ ATTATGTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCAGAGAA TTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGATTCAGGCAAAGTTCGCGCGATCGGCGTGAGCAATTTCTCCTCCAAGAAGCTTGGCGATCTGCTCTGCGTCGCCCGCGTCCCTCCGGCCGTTGATCAGGTCGAGTGCCACCCGGGCTGGCAGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTAGGAAGAACTCCGGCTCAGGTTGCTCTGCGCTGGGGTCTTCAGCAGGGTCAGAGTGTGCTTCCCAAGAGCGTCAGTGAGGCGAGGTTGAAGGAGAACATGGATCTGTTTGGTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATCTAAAAGAATGGAAATCACCTATGTGAAACAAAATGTGCCATTACTGTAAAAGAACGATGAAAAATAACAGGCATTTCACAACAAAAAAAAA]
[-] EMBL CF317955 [ CGTTCTGCCACACCAGTGGCGTTCATCTCTCTGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCTAGATGTTAGAAAGAACTCCGGCTCAGGTTGCTGTGCGCTGGGGTCTTCAGCAGGGTCAGAGTGTGCTTCCCAAGAGCGTCAGTGAGGCGAGGTTGAAGGAGAACATGGATCTGTTTGGTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTTTCTGAAATCGAACAGGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTTTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATTTAAAAGAATGGAAA ]
consensusID : consensus_9240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CATGGACTGAATGACTGCATGACAGAGTTTCCCTTCGTCAAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGAGCAGAGCATCAGGCGCGTGTGGGTAGCCGGAGGACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCAGAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGATTCAGGCAAAGCTCGCGCGAT]
[+] EMBL CF337413 [CATGGACTGAATGACTGCATGACAGAGTTTCCCTTCGTCAAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGAGCAGAGCATCAGGCGCGTGTGGGTAGCCGGAGGACATGGCCACCCACTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCAGAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGATTCAGGCAAAGCTCGCGCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9240#0 TAAAAGACATGGCATCTCAACAATACTCCTGATT-TTCTACTACTGATTTTCCCTTCGTC 59
consensus_9240#1 ---------------------CATGGACTGAATGACTGCATGACAGAGTTTCCCTTCGTC 39
** * ** * * ** ** ************
consensus_9240#0 AAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGA 119
consensus_9240#1 AAGCGACTCCAAAACGTGCCCCATATCTAATCTGTCTCGCACGCGGCCGGCGGCGGAAGA 99
************************************************************
consensus_9240#0 GCAGAGCATCAGGCGCGTGTGGATAGCCGGAGGACATGGCCACCCACTTCACGCTCAACA 179
consensus_9240#1 GCAGAGCATCAGGCGCGTGTGGGTAGCCGGAGGACATGGCCACCCACTTCACGCTCAACA 159
********************** *************************************
consensus_9240#0 CCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGTCGTCG 239
consensus_9240#1 CCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGTCGTCG 219
************************************************************
consensus_9240#0 CCGACGTGGTCTCCGCCGCCGTCAAGGAAGGGTACCGGCACATAGACTGCGCGCCGCTGT 299
consensus_9240#1 CCGACGTGGTCTCCGCCGCCGTCAAGGCAGGGTACCGGCACATAGACTGCGCGCCGCTGT 279
*************************** ********************************
consensus_9240#0 ACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGATGGGGTTGTCA 359
consensus_9240#1 ACAAGAACGAGCAGGAGATTGGTGGTGCTCTGAAGAAGCTCTTCGATGATGGGGTTGTCA 339
************************************************************
consensus_9240#0 AGCGGGAAGACCTCTTCATCACCTNCAAGATATGGTGCTGACTGCTGCTGTCTTGTTCCT 419
consensus_9240#1 AGCGGGAAGACCTCTTCATCACCTCCAAGATATGGTGC---------------------- 377
************************ *************
consensus_9240#0 TCTATTGACCGACCTCAACTTCTGAACGCTACTAGTAGTGCAAGTTTATTCTGCTATTTC 479
consensus_9240#1 ------------------------------------------------------------
consensus_9240#0 GAATTATGTTCTATCCCTTCCTCTTGAAGACGTCCCAAACTCTGCAGGTGCAGCGACCTC 539
consensus_9240#1 ---------------------------------------------------AGCGACCTC 386
*********
consensus_9240#0 GCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTAC 599
consensus_9240#1 GCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTAC 446
************************************************************
consensus_9240#0 GTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCA 659
consensus_9240#1 GTTGATCTGTATCTGATTCATTGGCCGTTTCAGATCAAGAAAGGCACGGAGCTCAGTCCA 506
************************************************************
consensus_9240#0 GAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGAT 719
consensus_9240#1 GAGAACTTCGTCAAGCCTGACATACCCAGCACCTGGCGAGCGATGGAGCAGCTGTACGAT 566
************************************************************
consensus_9240#0 TCAGGCAAAGCTCGCGCGATCGGCGTGAGCAATTTCTCCTCCAAGAAGCTTGGCGATCTG 779
consensus_9240#1 TCAGGCAAAGCTCGCGCGAT---------------------------------------- 586
********************
consensus_9240#0 CTCTGCGTCGCCCGCGTCCCTCCGGCCGTTGATCAGGTCGAGTGCCACCCGGGCTGGCAG 839
consensus_9240#1 ------------------------------------------------------------
consensus_9240#0 CAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTGCGTATGCTCCA 899
consensus_9240#1 ------------------------------------------------------------
consensus_9240#0 TTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTA 959
consensus_9240#1 ------------------------------------------------------------
consensus_9240#0 GGAAGAACTCCGGCTCAGGTTGCTCTGCGCTGGGGTCTTCAGCAGGGTCAGAGTGTGCTT 1019
consensus_9240#1 ------------------------------------------------------------
consensus_9240#0 CCCAAGAGCGTCAGTGAGGCGAGGTTGAAGGAGAACATGGATCTGTTTGGTTGGTCTATT 1079
consensus_9240#1 ------------------------------------------------------------
consensus_9240#0 CCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGGTTAAGCAAATCAGAGGAGAT 1139
consensus_9240#1 ------------------------------------------------------------
consensus_9240#0 GGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATC 1199
consensus_9240#1 ------------------------------------------------------------
consensus_9240#0 TAAAAGAATGGAAATCACCTATGTGAAACAAAATGTGCCATTACTGTAAAAGAACGATGA 1259
consensus_9240#1 ------------------------------------------------------------
consensus_9240#0 AAAATAACAGGCATTTCACAACAAAAAAAAA 1290
consensus_9240#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||