cluster # 9247

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Oryza sativa
cluster # 9247 cluster # 9247 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9247#0 length = 857 sequences # 5

consensus_9247#1 length = 500 sequences # 1

consensusID : consensus_9247#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 857
fasta sequence

                              [TGACACGGACTGAAGGAGTAGAAAACCCCCCACACCCCCCTCTCCTCTCCCCACTCCAAATCTCCCTCCTCCTCTTCGTCTTCTTCCTTCCCCCTTGGGCACTTGGCCTAGCTACTAGTACTACTTCCCCCATGCCCCTCCACTCCTATGATCCTTCCTCCTCCCCACCCTCCCTGGTTTCTTGATCCATCCTTTCTCATCCAGATTTGAGCCCCCGCCTTCTCCGTCCCCCCCGGATTCCTCGCTTTCTGCCCAGAAATTTGCTGGCGTTGGGGGGGCTCGGAGATGTCCGGCGGCGTGCAGGAGCAGTTTGAGATCAAGTTCCGGCTGCCGGACGGCACCGACATCGGGCCCAAGAGGTACCCGGCGGCCTCCACCGTCGCCACGCTCAAGGAATCCATCGTTGCTCAATGGCCTAAAGCAGATAAGGAAAAGGGCCCAAGGACTGTAAATGACCTCAAGCTTATTAATGCTGGGAAGATATTGGAGAACAACAAAACCCTTTCAGAATGCAAAAGCCCAATTTGTGACTTCTCTGGATTGACAACAATGCATGTCGTAGTTCGTGCTCCTACTTCAGACAAACAGTCCAATAAAATAGTTGCCAAGAAGCCAAAGGATTTCAGGTGTGGTTGTTCCATCATGTGACAGCTTTGTGAATAGTAGCAGTACAGCGAGGAAGTGTCAGCTATTGAACTCCTCCCCTTTTTTGGCTCTTGCTAGAGTGTTGTATGATGCCTGAGGCGCTTTCTCCTTTCATTTTTCTTTCACTGTATTATGGGTGGCTCATTGCCCAAAATCCTGAGTTGCATCGAGTACATGACTTGAAGTTATTGGTCTAAAATCTAAATTCGTTC]

[+] EMBL CF339202             [TGACACGGACTGAAGGAGTAGAAAACCCCCCACACCCCCCTCTCCTCTCCCCACTCCAAATCTCCCTCCTCCTCTTCGTCTTCTTCCTTCCCCCTTGGGCACTTGGCCTAGCTACTAGTACTACTTCCCCCATGCCCCTCCACTCCTATGATCCTTCCTCCTCCCCACCCTCCCTGGTTTCTTGATCCATCCTTTCTCATCCAGATTTGAGCCCCCGCCTTCTCCGTCCCCCCCGGATTCCTCGCTTTCTGCCCAGAAATTTGCTGGCGTTGGGGGGGCTCGGAGATGTCCGGCGGCGTGCAGGAGCAGTTTGAGATCAAGTTCCGGCTGCCGGACGGCACCGACATCGGGCCCAAGAGGTACCCGGCGGCCTCCACCGTCGCCACGCTCAAGGAATCCATCGTTGCTCAATGGCCTAAAGCAGATAAGGAAAAGGGCCCAAGGACTGTAAATGACCTCAAGCTTATTAATGCTGGGAAGATATTGGAGAACAACAAAACCCTTTCAGAATGCAAAAGCCCAATTTGTGACTTCTCTGGATTGACAACAATGCAT                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK099511             [                                CACCCCCCTCTCCTCTCCCCACTCCAAATCTCCCTCCTCCTCTTCGTCTTCTTCCTTCCCCCTTGGGCACTTGGCCTAGCTACTAGTACTACTTCCCCCATGCCCCTCCACTCCTATGATCCTTCCTCCTCCCCACCCTCCCTGGTTTCTTGATCCATCCTTTCTCATCCAGATTTGAGCCCCCGCCTTCTCCGTCCCCCCCGGATTCCTCGCTTTCTGCCCAGAAATTTGCTGGCGTTGGGGGGGCTCGGAGATGTCCGGCGGCGTGCAGGAGCAGTTTGAGATCAAGTTCCGGCTGCCGGACGGCACCGACATCGGGCCCAAGAGGTACCCGGCGGCCTCCACCGTCGCCACGCTCAAGGAATCCATCGTTGCTCAATGGCCTAA   AGATAAGGAAAAGGGCCCAAGGACTGTAAATGACCTCAAGCTTATTAATGCTGGGAAGATATTGGAGAACAACAAAACCCTTTCAGAATGCAAAAGCCCAATTTGTGACTTCTCTGGATTGACAACAATGCATGTCGTAGTTCGTGCTCCTACTTCAGACAAACAGTCCAATAAAATAGTTGCCAAGAAGCCAAAGGATTTCAGGTGTGGTTGTTCCATCATGTGACAGCTTTGTGAATAGTAGCAGTACAGCGAGGAAGTGTCAGCTATTGAACTCCTCCCCTTTTTTGGCTCTTGCTAGAGTGTTGTATGATGCCTGAGGCGCTTTCTCCTTTCATTTTTCTTTCACTGTATTATGGGTGGCTCATTGCCCAAAATCCTGAGTTGCATCGAGTACATGACTTGAAGTTATTGGTCTAAAATCTAAATTCGTTC]
[+] EMBL CF339557             [                                CACCCCCCTCTCCTCTCCCCACTCCAAATCTCCCTCCTCCTCTTCGTCTTCTTCCTTCCCCCTTGGGCACTTGGCCTAGCTACTAGTACTACTTCCCCCATGCCCCTCCACTCCTATGATCCTTCCTCCTCCCCACCCTCCCTGGTTTCTTGATCCATCCTTTCTCATCCAGATTTGAGCCCCCGCCTTCTCCGTCCCCCCCGGATTCCTCGCTTTCTGCCCAGAAATTTGCTGGCGTTGGGGGGGCTCGGAGATGTCCGGCGGCGTGCAGGAGCAGTTTGAGATCAAGTTCCGGCTGCCGGACGGCACCGACATCGGGCCCAAGAGGTACCCGGCGGCCTCCACCGTCGCCACGCTCAAGGAATCCATCGTTGCTCAATGGCCTAAAGCAGATAAGGAAAAGGGCCCAAGGACTGTAAATGACCTCAAGCTTATTAATGCTGGGAAGATATTGGAGAACAACAAAACCCTTTCAGAATGCAAAAGCCCAATTTGTGACTTCTCTGGATTGACAACAATGCATGTCGCAGTTCGTGCTCCTACTTCAGACAAACAGTCCAATAAAATAGTTGCCAAGAAGCCAAAGGA                                                                                                                                                                                                                                             ]
[+] EMBL CF338375             [                                 ACCCCCCTCTCCTCTCCCCACTCCAAATCTCCCTCCTCCTCTTCGTCTTCTTCCTTCCCCCTTGGGCACTTGGCCTAGCTACTAGTACTACTTCCCCCATGCCCCTCCACTCCTATGATCCTTCCTCCTCCCCACCCTCCCTGGTTTCTTGATCCATCCTTTCTCATCCAGATTTGAGCCCCCGCCTTCTCCGTCCCCCCCGGATTCCTCGCTTTCTGCCCAGAAATTTGCTGGCGTTGGGGGGGCTCGGAGATGTCCGGCGGCGTGCAGGAGCAGTTTGAGATCAAGTTCCGGCTGCCGGACGGCACCGACATCGGGCCCAAGAGGTACCCGGCGGCCTCCACCGTCGCCACGCTCAAGGAATCCATCGTTGCTCAATGGCCTAAAGCAGATAAGGAAAAGGGCCCAAGGACTGTAAATGACCTCAAGC                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF338804             [                                 cCCCCCCTCTCCTCTCCCCACTCCAAATCTCCCTCCTCCTCTTCGTCTTCTTCCTTCCCCCTTGGGCACTTGGCCTAGCTACTAGTACTACTTCCCCCATGCCCCTCCACTCCTATGATCCTTCCTCCTCCCCACCCTCCCTGGTTTCTTGATCCATCCTTTCTCATCCAGATTTGAGCCCCCGCCTTCTCCGTCCCCCCCGGATTCCTCGCTTTCTGCCCAGAAATTTGCTGGCGTTGGGGGGGCTCGGAGATGTCCGGCGGCGTGCAGGAGCAGTTTGAGATCAAGTTCCGGCTGCCGGACGGCACCGACATCGGGCCCAAGAGGTACCCGGCGGCCTCCACCGTCGCCACGCTCAAGGAATCCATCGTTGCTCAATGGCCTAAAGCAGATAAGGAAAAGGGCCCAAGGACTGTAAATGACCTCAAGCTTATTAATGCTGGGAAGATATTGGAGAACAACAAAACCCT                                                                                                                                                                                                                                                                                                                                                                  ]




>consensus_9247#0
TGACACGGACTGAAGGAGTAGAAAACCCCCCACACCCCCCTCTCCTCTCCCCACTCCAAA
TCTCCCTCCTCCTCTTCGTCTTCTTCCTTCCCCCTTGGGCACTTGGCCTAGCTACTAGTA
CTACTTCCCCCATGCCCCTCCACTCCTATGATCCTTCCTCCTCCCCACCCTCCCTGGTTT
CTTGATCCATCCTTTCTCATCCAGATTTGAGCCCCCGCCTTCTCCGTCCCCCCCGGATTC
CTCGCTTTCTGCCCAGAAATTTGCTGGCGTTGGGGGGGCTCGGAGATGTCCGGCGGCGTG
CAGGAGCAGTTTGAGATCAAGTTCCGGCTGCCGGACGGCACCGACATCGGGCCCAAGAGG
TACCCGGCGGCCTCCACCGTCGCCACGCTCAAGGAATCCATCGTTGCTCAATGGCCTAAA
GCAGATAAGGAAAAGGGCCCAAGGACTGTAAATGACCTCAAGCTTATTAATGCTGGGAAG
ATATTGGAGAACAACAAAACCCTTTCAGAATGCAAAAGCCCAATTTGTGACTTCTCTGGA
TTGACAACAATGCATGTCGTAGTTCGTGCTCCTACTTCAGACAAACAGTCCAATAAAATA
GTTGCCAAGAAGCCAAAGGATTTCAGGTGTGGTTGTTCCATCATGTGACAGCTTTGTGAA
TAGTAGCAGTACAGCGAGGAAGTGTCAGCTATTGAACTCCTCCCCTTTTTTGGCTCTTGC
TAGAGTGTTGTATGATGCCTGAGGCGCTTTCTCCTTTCATTTTTCTTTCACTGTATTATG
GGTGGCTCATTGCCCAAAATCCTGAGTTGCATCGAGTACATGACTTGAAGTTATTGGTCT
AAAATCTAAATTCGTTC

consensusID : consensus_9247#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence

                              [CCCAAAAGGTACCCGGGGGCCTCCCCGTTTGCCAGGTTCAAGGAATCCTTTGTTGCTCAATGGCCTAAAAATAAGGAAAAGGGCCCAAGGACTGTAAATGCCCTCAAGTTTATTAATGTTGGGAAAATATTGGAGAACAACAAACCCCTTTTAAAATGCAAAAGCCCAATTTGTGATTTTTTTGGATTGACAACAATGCATGTGGTAGTTGGGGTTCCTACTTCAGACAAACAGTCCAATAAAATAGTAGCCAAAAAGCCAAAGGATTTCAGGTGTGGTTGTTCCATCATGTGACAGCTTTGTGAATAGTACCAGTCCAGCGAGGAAGTGTCAGCTATTGAACTCCCCCCCTTTTTTGGTTTTTGCAAAAGTGTTGTATAAACCCTAAGGCGCTTTTTCCTTTCATTTTTTTTTCACTGAAAAAGGGGGGGCTCATTGCCCAAAATCCTGAGTTGCATTGAGTACATGACTTGAAGTTATTGGTTTAAAATTTAAATTGG]

[-] EMBL BI305937             [CCCAAAAGGTACCCGGGGGCCTCCCCGTTTGCCAGGTTCAAGGAATCCTTTGTTGCTCAATGGCCTAAAAATAAGGAAAAGGGCCCAAGGACTGTAAATGCCCTCAAGTTTATTAATGTTGGGAAAATATTGGAGAACAACAAACCCCTTTTAAAATGCAAAAGCCCAATTTGTGATTTTTTTGGATTGACAACAATGCATGTGGTAGTTGGGGTTCCTACTTCAGACAAACAGTCCAATAAAATAGTAGCCAAAAAGCCAAAGGATTTCAGGTGTGGTTGTTCCATCATGTGACAGCTTTGTGAATAGTACCAGTCCAGCGAGGAAGTGTCAGCTATTGAACTCCCCCCCTTTTTTGGTTTTTGCAAAAGTGTTGTATAAACCCTAAGGCGCTTTTTCCTTTCATTTTTTTTTCACTGAAAAAGGGGGGGCTCATTGCCCAAAATCCTGAGTTGCATTGAGTACATGACTTGAAGTTATTGGTTTAAAATTTAAATTGG]




>consensus_9247#1
CCCAAAAGGTACCCGGGGGCCTCCCCGTTTGCCAGGTTCAAGGAATCCTTTGTTGCTCAA
TGGCCTAAAAATAAGGAAAAGGGCCCAAGGACTGTAAATGCCCTCAAGTTTATTAATGTT
GGGAAAATATTGGAGAACAACAAACCCCTTTTAAAATGCAAAAGCCCAATTTGTGATTTT
TTTGGATTGACAACAATGCATGTGGTAGTTGGGGTTCCTACTTCAGACAAACAGTCCAAT
AAAATAGTAGCCAAAAAGCCAAAGGATTTCAGGTGTGGTTGTTCCATCATGTGACAGCTT
TGTGAATAGTACCAGTCCAGCGAGGAAGTGTCAGCTATTGAACTCCCCCCCTTTTTTGGT
TTTTGCAAAAGTGTTGTATAAACCCTAAGGCGCTTTTTCCTTTCATTTTTTTTTCACTGA
AAAAGGGGGGGCTCATTGCCCAAAATCCTGAGTTGCATTGAGTACATGACTTGAAGTTAT
TGGTTTAAAATTTAAATTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9247#0      TGACACGGACTGAAGGAGTAGAAAACCCCCCACACCCCCCTCTCCTCTCCCCACTCCAAA 60
consensus_9247#1      ------------------------------------------------------------
                                                                                  

consensus_9247#0      TCTCCCTCCTCCTCTTCGTCTTCTTCCTTCCCCCTTGGGCACTTGGCCTAGCTACTAGTA 120
consensus_9247#1      ------------------------------------------------------------
                                                                                  

consensus_9247#0      CTACTTCCCCCATGCCCCTCCACTCCTATGATCCTTCCTCCTCCCCACCCTCCCTGGTTT 180
consensus_9247#1      ------------------------------------------------------------
                                                                                  

consensus_9247#0      CTTGATCCATCCTTTCTCATCCAGATTTGAGCCCCCGCCTTCTCCGTCCCCCCCGGATTC 240
consensus_9247#1      ------------------------------------------------------------
                                                                                  

consensus_9247#0      CTCGCTTTCTGCCCAGAAATTTGCTGGCGTTGGGGGGGCTCGGAGATGTCCGGCGGCGTG 300
consensus_9247#1      ------------------------------------------------------------
                                                                                  

consensus_9247#0      CAGGAGCAGTTTGAGATCAAGTTCCGGCTGCCGGACGGCACCGACATCGGGCCCAAGAGG 360
consensus_9247#1      ---------------------------------------------------CCCAAAAGG 9
                                                                         ***** ***

consensus_9247#0      TACCCGGCGGCCTCCACCGTCGCCACGCTCAAGGAATCCATCGTTGCTCAATGGCCTAAA 420
consensus_9247#1      TACCCGGGGGCCTCCCCGTTTGCCAGGTTCAAGGAATCCTTTGTTGCTCAATGGCCTAAA 69
                      ******* ******* *  * **** * *********** * ******************

consensus_9247#0      GCAGATAAGGAAAAGGGCCCAAGGACTGTAAATGACCTCAAGCTTATTAATGCTGGGAAG 480
consensus_9247#1      A---ATAAGGAAAAGGGCCCAAGGACTGTAAATGCCCTCAAGTTTATTAATGTTGGGAAA 126
                          ****************************** ******* ********* ****** 

consensus_9247#0      ATATTGGAGAACAACAAAACCCTTTCAGAATGCAAAAGCCCAATTTGTGACTTCTCTGGA 540
consensus_9247#1      ATATTGGAGAACAACAAACCCCTTTTAAAATGCAAAAGCCCAATTTGTGATTTTTTTGGA 186
                      ****************** ****** * ********************** ** * ****

consensus_9247#0      TTGACAACAATGCATGTCGTAGTTCGTGCTCCTACTTCAGACAAACAGTCCAATAAAATA 600
consensus_9247#1      TTGACAACAATGCATGTGGTAGTTGGGGTTCCTACTTCAGACAAACAGTCCAATAAAATA 246
                      ***************** ****** * * *******************************

consensus_9247#0      GTTGCCAAGAAGCCAAAGGATTTCAGGTGTGGTTGTTCCATCATGTGACAGCTTTGTGAA 660
consensus_9247#1      GTAGCCAAAAAGCCAAAGGATTTCAGGTGTGGTTGTTCCATCATGTGACAGCTTTGTGAA 306
                      ** ***** ***************************************************

consensus_9247#0      TAGTAGCAGTACAGCGAGGAAGTGTCAGCTATTGAACTCCTCCCCTTTTTTGGCTCTTGC 720
consensus_9247#1      TAGTACCAGTCCAGCGAGGAAGTGTCAGCTATTGAACTCCCCCCCTTTTTTGGTTTTTGC 366
                      ***** **** ***************************** ************ * ****

consensus_9247#0      TAGAGTGTTGTATGATGCCTGAGGCGCTTTCTCCTTTCATTTTTCTTTCACTGTATTATG 780
consensus_9247#1      AAAAGTGTTGTATAAACCCTAAGGCGCTTTTTCCTTTCATTTTTTTTTCACTGAAAAAGG 426
                       * ********** *  *** ********* ************* ******** *  * *

consensus_9247#0      GGTGGCTCATTGCCCAAAATCCTGAGTTGCATCGAGTACATGACTTGAAGTTATTGGTCT 840
consensus_9247#1      GGGGGCTCATTGCCCAAAATCCTGAGTTGCATTGAGTACATGACTTGAAGTTATTGGTTT 486
                      ** ***************************** ************************* *

consensus_9247#0      AAAATCTAAATTCGTTC 857
consensus_9247#1      AAAATTTAAATTGG--- 500
                      ***** ****** *