These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1524 fasta sequence [GCGTTAAAGATATGGTATAAGAAATAGGCTATTAAGTAACCCTTTATGAATTGTGGATACATCTGTATCCTTAACATACTGAAACAACTGCCATTATTCGTATCAAACCAATACCGATTCATACAAGTTAAATCTTCTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATTAAGACGCTTGGCCTGATTTCGAAATTGTCCAGAGTTTTTTATGTAGTTTTCATTGCAAAATGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAATTCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAACCAGAAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTCTTCTTTAATGCAATAGCTATAGTTTGATATAGAATCCATTTCTCAAAGTAATGGAAACCTTTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTATCGTGAAAAGTGATACCTGTGAAGATCGTGCATTTCAGTCACATTCAGATCCGTTTTTTGAGTCCATGATATAACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCACCAGGAGTCGCGAATATCTCCTTCTTCCCTAATCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCCATGGAGAATGTGGTCAGAAACCCATAATAGAGTCCGAACGCAACGACCGAATTAATTATCCTCATCGAGAAACTTAGACTACTAAGTAGAAAAGATTTGAAAATCATGGCATGGGTCTCCTTTTTTTCTTTCTTTAGAGTTTTCTATATGCACAATTTCTCGATGTTTCGATGAGAATTTCTTGACTTTCCATATATAGAAAGGGATAGACTATAAATGACATCTCTTATGTCAATAAGACCAAAGGGATGGATATTAAATGATAGGAAGTGCTAGGAAGTGAAATAGAATGAAATAGAGCCACTCTGGGCTTACCTATGAAATGAGGCATGGAACGGAGCCACTACGAAGAAATTCCGGGAGTTACGAAAGAAGCTTCGGACTCATATTGTTCATGGGTTGAGAGCGGGAGTTGAACTCTAGGAGGTCGAATCCCCCTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCCCTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCAATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAATTCAATTCTTTATTCTTACATTAAA] [+] EMBL CB661986 [GCGTTAAAGATATGGTATAAGAAATAGGCTATTAAGTAACCCTTTATGAATTGTGGATACATCTGTATCCTTAACATACTGAAACAACTGCCATTATTCGTATCAAACCAATACCGATTCATACAAGTTAAATCTTCTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATTAAGACGCTTGGCCTGATTTCGAAATTGTCCAGAGTTTTTTATGTAGTTTTCATTGCAAAATGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAATTCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAACCAGAAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTCTTCTTTAATGCAATAGCTATAGTTTGATATAGAATCCATTTCTCAAAGTAATGGAAACCTTTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTATCGTGAAAAGTGATACCTGTGAAGATCGTGCATTTCAGTCACATTCAGATCCGTTTTTTGAGTCCATGATATAACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCACCAGGAGTCGCGAATATCTCCTTCTTCCCTAATCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCCATGGAGAATGTGGTCAGAAACCCATAATAGAGTCCGAACGCAACGACCGAATTAATT ] [-] EMBL CB661985 [ TTTTTGCATATGTATTAAGACGCTTGGCCTGATTTCGAAATTGTCCAGAGTTTTTTATGTAGTTTTCATTGCAAAATGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAATTCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAACCAGAAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTCTTCTTTAATGCAATAGCTATAGTTTGATATAGAATCCATTTCTCAAAGTAATGGAAACCTTTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTATCGTGAAAAGTGATACCTGTGAAGATCGTGCATTTCAGTCACATTCAGATCCGTTTTTTGAGTCCATGATATAACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCACCAGGAGTCGCGAATATCTCCTTCTTCCCTAATCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCCATGGAGAATGTGGTCAGAAACCCATAATAGAGTCCGACCGCAACGACCGAATTAATTATCCTCATCGAGAAACTTAGACTACTAAGTAGAAAAGATTTGAAAATCATGGCATGGGTCTCCTTTTTTTCTTTCTTTAGAGTTTTCTATATGCACAATTTCTCGATGTTTCGATGAGAATTTCTTGACTTTCCATATATAGAAAGGGATAGA ] [-] EMBL CA763822 [ AGAAAACCAGAAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTCCTTCTTTAATGCAATAGCTATAGTTTGATATAGAATCCATTTCTCAAAGTAATGGAGACCTTTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTATCGTGAAAAGTGATGCCTGTGAAGATCGTGCATTTCAGTCACATTCAGATCCGTTTTTTGAGTCCATGATATAACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCACCAGGAGTCGCGAATATCTCCTTCTTC ] [-] EMBL CK085106 [ GATGTTTCGATGAGAATTTCTTGACTTTCCATATATAGAAAGAGATAGACTATAAATGACATCTCTTATGTCAATAAGACCAAAGGGATGGATATTAAATGATAGGAAGTGCTAGGAAGTGAAATAGAATGAAATAGAGCCACTCTGGGCTTACCTATGAAATGAGGCATGGAACGGAGCCACTACGAAGAAATTCCGGGAGTTACGAAAGAAGCTTCGGACTCATATTGTTCATGGGTTGAGAGCGGGAGTTGAACTCTAGGAGGTCGAATCCCCCTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCCCTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCAATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAATTCAATTCTTTATTCTTACATTAAA] consensusID : consensus_9254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [ACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGCAAAATAGCTCGATGCCAGAATGATAAAAAGCTTAACACCTCTTATTTGACTTTTTCACTATTTTGAAATACGAAAAAGATCCAAATCCAAAATGCAAAGGTCGTCTTATTCAAAACCTCAATCATCACATCCCCTCTCTCCCACTTCACACCTCGGAACGCACTGTTCTTATAGAGAGAAAGGGGCTTTCCCATCTTCTTAACCCGAAATGAAATGGCTGAGGAGAGGGAGGTTCCTTTTGGGGGGTACCCCCGGGAAGAGATCCAGTGGAGACGGGGTGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCCCTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCG] [+] EMBL CK085163 [ACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGCAAAATAGCTCGATGCCAGAATGATAAAAAGCTTAACACCTCTTATTTGACTTTTTCACTATTTTGAAATACGAAAAAGATCCAAATCCAAAATGCAAAGGTCGTCTTATTCAAAACCTCAATCATCACATCCCCTCTCTCCCACTTCACACCTCGGAACGCACTGTTCTTATAGAGAGAAAGGGGCTTTCCCATCTTCTTAACCCGAAATGAAATGGCTGAGGAGAGGGAGGTTCCTTTTGGGGGGTACCCCCGGGAAGAGATCCAGTGGAGACGGGGTGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCCCTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCG] consensusID : consensus_9254#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [NNAAGGNGANNNGNNTNNNNNNNCCCNNNGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCAATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAATTCAATTCTTTATTCTTACATTAAAGAATGAATCAAATCTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAAGGGGGATTCGACCTCCTAGAGTTCAACTCCCGCTCTCAACCCATGAACAATATGAGTCCGAAGCTTCTTTCGTAACTCCCGGAATTTCTTCGTAGTGGC] [-] EMBL CF196281 [NNAAGGNGANNNGNNTNNNNNNNCCCNNNGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCAATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAATTCAATTCTTTATTCTTACATTAAAGAATGAATCAAATCTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAAGGGGGATTCGACCTCCTAGAGTTCAACTCCCGCTCTCAACCCATGAACAATATGAGTCCGAAGCTTCTTTCGTAACTCCCGGAATTTCTTCGTAGTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9254#0 GCGTTAAAGATATGGTATAAGAAATAGGCTATTAAGTAACCCTTTATGAATTGTGGATAC 60 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 ATCTGTATCCTTAACATACTGAAACAACTGCCATTATTCGTATCAAACCAATACCGATTC 120 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 ATACAAGTTAAATCTTCTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATT 180 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 AAGACGCTTGGCCTGATTTCGAAATTGTCCAGAGTTTTTTATGTAGTTTTCATTGCAAAA 240 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 TGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAAT 300 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 TCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAACCAG 360 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 AAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTC 420 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 TTCTTTAATGCAATAGCTATAGTTTGATATAGAATCCATTTCTCAAAGTAATGGAAACCT 480 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 TTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTATCGTGAAAAGTG 540 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 ATACCTGTGAAGATCGTGCATTTCAGTCACATTCAGATCCGTTTTTTGAGTCCATGATAT 600 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 AACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGAT 660 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 AATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCACCAGGAGTCGCGAATA 720 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 TCTCCTTCTTCCCTAATCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCCATGGAGAAT 780 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 GTGGTCAGAAACCCATAATAGAGTCCGAACGCAACGACCGAATTAATTATCCTCATCGAG 840 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 AAACTTAGACTACTAAGTAGAAAAGATTTGAAAATCATGGCATGGGTCTCCTTTTTTTCT 900 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ----------ACCAATCCATCCCGAATTTGGTGGTTAAACTCTA---CTGCGGTGACGAT 47 consensus_9254#0 TTCTTTAGAGTTTTCTATATGCACAATTTCTCGATGTTTCGATGAGAATTTCTTGACTTT 960 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ACTGTAGGGGAGGTCCTGCGGCAAAATAGCTCGATGCCAGAATGATAAAA----AGCTTA 103 consensus_9254#0 CCATATATAGAAAGGGATAGACTATAAATGACATCTCTTATGTCAATAAGACCAAAGGGA 1020 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 ACACCTCTTATTTGACTTTTTCACTATTTTGAAATACGAAAAAGATCCAAATCCAAAATG 163 consensus_9254#0 TGGATATTAAATGATAGGAAGTGCTAGGAAGTGAAATAGAATGAAATAGAGCCACTCTGG 1080 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 CAAAGGTCGTCTTATTCAAAACCTCAATCATCACATCCCCTCTCTCCCACTTCACACCTC 223 consensus_9254#0 GCTTACCTATGAAATGAGGCATGGAACGGAGCCACTACGAAGAAATTCCGGGAGTTACGA 1140 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 GGAACGCACTGTTCTTATAGAGAGAAAGGGGCTTTCCCATCTTCTTAACCCGAAATGAAA 283 consensus_9254#0 AAGAAGCTTCGGACTCATATTGTTCATGGGTTGAGAGCGGGAGTTGAACTCTAGGAGGTC 1200 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 TGGCTGAGGAGAGGGAGGTTCCTTTTGGGGGGTACCCCCGGGAAGAGATCCAGTGGAGAC 343 consensus_9254#0 GAATCCCCCTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTC 1260 consensus_9254#2 ------------------------------------------------------------ consensus_9254#1 GGGGTGGGCCTGTAGCTCAG------AGGATTAGAGCACGTGGCTACGAACCACGGTGTC 397 consensus_9254#0 GTAGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCC 1320 consensus_9254#2 ---------------------------------NNAAGGNGANNNGNNTNNNNNNNCCCN 27 consensus_9254#1 GGGGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGAAGGGCCTTTACTTTCCCC 457 **** ** * * *** consensus_9254#0 CTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGC 1380 consensus_9254#2 NNGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGC 87 consensus_9254#1 CTGAGGGTAGGAAAACCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTGGGTATGC 517 ********************************************************** consensus_9254#0 TCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCA 1440 consensus_9254#2 TCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAAAATGCA 147 consensus_9254#1 TCTTTCCTTTTGTCG--------------------------------------------- 532 *************** consensus_9254#0 ATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAAT 1500 consensus_9254#2 ATAGAAACAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAAT 207 consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 TCAATTCTTTATTCTTACATTAAA------------------------------------ 1524 consensus_9254#2 TCAATTCTTTATTCTTACATTAAAGAATGAATCAAATCTCCCCAAGTAGGATTCGAACCT 267 consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 ------------------------------------------------------------ consensus_9254#2 ACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAAGGGGGAT 327 consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 ------------------------------------------------------------ consensus_9254#2 TCGACCTCCTAGAGTTCAACTCCCGCTCTCAACCCATGAACAATATGAGTCCGAAGCTTC 387 consensus_9254#1 ------------------------------------------------------------ consensus_9254#0 -------------------------------- consensus_9254#2 TTTCGTAACTCCCGGAATTTCTTCGTAGTGGC 419 consensus_9254#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||