These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 731 fasta sequence [CCCCCCGCCCCCAACCCCGACCTCCTCCCGTGCTCCGCGCTCCGATCCGCCGCCGCCGCCGCGCGCGCGCCGCCGGGGGAGTGCGCCGGCGTGTGGTGGTGGGTGTGTAAGGGTAGGTGGAGGGGTGGGTGATCCCTAATATCCTGTGCGACGACATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTT-GTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAATACATTTAAAGCTCGAACAAAGTCACCAAAGTCGATGACCCCCCTTTTCTTCACATCAAAAAGGTCAAATATCCGATTAGCGAA] [+] EMBL CB653877 [CCCCCCGCCCCCAACCCCGACCTCCTCCCGTGCTCCGCGCTCCGATCCGCCGCCGCCGCCGCGCGCGCGCCGCCGGGGGAGTGCGCCGGCGTGTGGTGGTGGGTGTGTAAGGGTAGGTGGAGGGGTGGGTGATCCCTAATATCCTGTGCGACGACATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTT GTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAATACATTTAAAGCTCGAACAAAGTCACCAAAGTCGATGACCCCCCTTTTCTTCACATCAAAAAGGTCAAATATCCGATTAGCGAA] [-] EMBL AA752507 [ TTTTGTTTTTMGTTAACTGTACACCGGTAACAGAYACACGATCATGTGACGAGATCATCAACCRCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGActcg ] consensusID : consensus_9272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [ATAGACAGAAGATTTTCCACTCATGTTTAGAAAACTAGGTAAATACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGNCAAAGACNTGAAANCTGCAAACCCAANCATACAAATGTTACATTCTCTGGTTTCTGCATGCTTAGCATCCGAATCTAATCANCANCACTAAAACGACAACGCTAATATCCTGTGCGACGACATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAATACATTTAAAGCTCGAACA] [-] EMBL CA766884 [ATAGACAGAAGATTTTCCACTCATGTTTAGAAAACTAGGTAAATACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGNCAAAGACNTGAAANCTGCAAACCCAANCATACAAATGTTACATTCTCTGGTTTCTGCATGCTTAGCATCCGAATCTAATCANCANCACTAAAACGACAACGCTAATATCCTGTGCGACGACATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAATACATTTAAAGCTCGAACA] consensusID : consensus_9272#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 629 fasta sequence [TGGAAAACTTTGAAAAGACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGGCAAAGACCTGAAAACTGCAAACCCAAACATACAAATGTTACATTCCGAATCTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGA-CATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAACGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGCTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCCACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCCCCTCC] [+] EMBL CB653878 [TGGAAAACTTTGAAAAGACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGGCAAAGACCTGAAAACTGCAAACCCAAACATACAAATGTTACATTCCGAATCTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGA CATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAACGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGCTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCCACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCCCCTCC] [-] EMBL AA749548 [ CCTGTGCGACGAGCATCATCAATGAAGTTATACGCTTCCAAGCTG GCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGA ] consensusID : consensus_9272#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [TTTTTTTTTTTTTCCAGATAGACAGAAAATTTTCCACTCATGTTTGGAAAACTAGGTAAATACTGTATATCTCTACGGGGACAAGGATAAAATGTTATAGTTGGCAAAGACCTGAAAACTGCAAACCCAAACATACAAATGTTACATTCTCTGGTTTCTGCATGCTTAGCATCCGAATCTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGACTTCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAATGGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCCCATCAGATAATCTCCCCCTTGTCTCGT] [+] EMBL CA759191 [TTTTTTTTTTTTTCCAGATAGACAGAAAATTTTCCACTCATGTTTGGAAAACTAGGTAAATACTGTATATCTCTACGGGGACAAGGATAAAATGTTATAGTTGGCAAAGACCTGAAAACTGCAAACCCAAACATACAAATGTTACATTCTCTGGTTTCTGCATGCTTAGCATCCGAATCTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGACTTCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAATGGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCCCATCAGATAATCTCCCCCTTGTCTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9272#1 -----------------ATAGACAGAAGATTTTCCACTCATGTTTAGAAAACTAGGTAAA 43 consensus_9272#3 TTTTTTTTTTTTTCCAGATAGACAGAAAATTTTCCACTCATGTTTGGAAAACTAGGTAAA 60 consensus_9272#2 --------------------------------------------TGGAAAACTTTGAAAA 16 consensus_9272#0 ------------------------------------------------------------ consensus_9272#1 TACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGNCAAAGACNTGAAANCT 103 consensus_9272#3 TACTGTATATCTCTACGGGGACAAGGATAAAATGTTATAGTTGGCAAAGACCTGAAAACT 120 consensus_9272#2 GACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGGCAAAGACCTGAAAACT 76 consensus_9272#0 ----------CCCCCCGCCCCCAACCCCGACCTCCTCCCGTGCTCCGCGCTCCGA--TCC 48 * * ** *** * * * ** * * ** * consensus_9272#1 GCAAACCCAANCATACAAATGTTACATTCTCTG-GTTTCTGCATGCT-TAGCATCCGAAT 161 consensus_9272#3 GCAAACCCAAACATACAAATGTTACATTCTCTG-GTTTCTGCATGCT-TAGCATCCGAAT 178 consensus_9272#2 GCAAACCCAAACATACAAATGTTACATTC--------------------------CGAAT 110 consensus_9272#0 GCCGCCGCCGCCGCGCGCGCGCCGCCGGGGGAGTGCGCCGGCGTGTGGTGGTGGGTGTGT 108 ** * * * * * * * * consensus_9272#1 CTAATCANCANCACTAAAACGACAACGCTAATATCCTGTGCGACGACATCATCAATGAAG 221 consensus_9272#3 CTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGACTTCATCAATGAAG 238 consensus_9272#2 CTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGACATCATCAATGAAG 170 consensus_9272#0 AAGGGTAGGTGGAGGGGTGGGTGATCCCTAATATCCTGTGCGACGACATCATCAATGAAG 168 * * * * ******************** ************ consensus_9272#1 TTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAAT 281 consensus_9272#3 TTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAAT 298 consensus_9272#2 TTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAAT 230 consensus_9272#0 TTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAAT 228 ************************************************************ consensus_9272#1 GTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAA 341 consensus_9272#3 GTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAA 358 consensus_9272#2 GTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAA 290 consensus_9272#0 GTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAA 288 ************************************************************ consensus_9272#1 CAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAAT 401 consensus_9272#3 CAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAAT 418 consensus_9272#2 CAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAAT 350 consensus_9272#0 CAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAAT 348 ***************************************************** ****** consensus_9272#1 G-TGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCT 460 consensus_9272#3 GGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCT 478 consensus_9272#2 G-TGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAACGAGGGATTCCT 409 consensus_9272#0 G-TGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCT 407 * ********************************************** *********** consensus_9272#1 TGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATC 520 consensus_9272#3 TGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATC 538 consensus_9272#2 TGAGACAAAATTCTCCCACTCTGCTCTATCTATTCTCCCATCCTGATTAGTATCAGCATC 469 consensus_9272#0 TGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATC 467 *********************** ************************************ consensus_9272#1 TGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTC 580 consensus_9272#3 TGAAAACGTCTTGTCAAGGATTGTCTCAATAATCCCATCAGATAATCTCCCCCTTGTCTC 598 consensus_9272#2 TGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTC 529 consensus_9272#0 TGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTC 527 ********************************** ************** ** ** consensus_9272#1 ACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTC 640 consensus_9272#3 GT---------------------------------------------------------- 600 consensus_9272#2 ACCTAGAAGAGCAATCCACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTC 589 consensus_9272#0 ACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTC 587 consensus_9272#1 CATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAA 700 consensus_9272#3 ------------------------------------------------------------ consensus_9272#2 CATATCATATAGCTTGAAGGAAAAATCAATTTTCCCCTCC-------------------- 629 consensus_9272#0 CATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAA 647 consensus_9272#1 TACATTTAAAGCTCGAACA----------------------------------------- 719 consensus_9272#3 ------------------------------------------------------------ consensus_9272#2 ------------------------------------------------------------ consensus_9272#0 TACATTTAAAGCTCGAACAAAGTCACCAAAGTCGATGACCCCCCTTTTCTTCACATCAAA 707 consensus_9272#1 ------------------------ consensus_9272#3 ------------------------ consensus_9272#2 ------------------------ consensus_9272#0 AAGGTCAAATATCCGATTAGCGAA 731 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||