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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 936 fasta sequence
[TTGCTTCCCAATCGTCCCAGCGGCGTGTGCCCCTCACACCCTCGTCCAGCCAAGGCGGCGGC-GCACAGCCAGGAGAAGCCGTCGAGCGGCGGCGCACC-GCGCACCGCGCAC-GGAGCACCCCTCCCCCCCCTGTTACCGTCCCCTCCCGCTGCAGAAGGCGCCGGCGCACGGCGTCGTCCCATCCCTAATTCCGGCCCCCCCTCTGGTTCACTCCCCACGTTTGAAGTCAGCTTGGTTCTGACTCCAGGGATCTCAACTATCCTGTCCAGGATCAAGACCAAACCCGTCAGCCATCATGCAGGCTAGCGACAGGTTCAACATAAATTCTCAACTTGAGCATCTTCAAGCGAAATATGTGGGCACAGGGCATGCTGACTTGAATCGATTTGAATGGGCAGTAAACATCCAAAGGGATAGCTATGCATCCTATATTGGGCACTATCCAATGCTGGCATATTTTTCCATTGCTGAGAATGAATCAATTGGAAGAGAGCGTTACAATTTTATGCAGAAAATGCTACTTCCGTGTGGTCTGCCTCCTGAGAGAGACGAAGATTGAGGTGGCCTTCGGGTCTGGCGTTCAGTGTTACTGCAACTACTGGAACCTAGGGTTCAGTATCAGTTTGATATCCAAAGCAAGATCAAACTAATCTTTGCCTAGCCACCTACTACTACTATGTAAGACTCTGTCCATCTTGAACATCTGAAGCACTCTGTGTACCCTTTTCGAACATGTTCATCAGTAATGTTCGGCGCATGTGTGTAACGGATCTTTTAGTTAAGGTGAATGTTGAGGGACAAAATGTTTCTGGAGCGATCATTCATATGTTTGCATAAGCTCCTTGCCGCTGCAAATATGGCATATTAGAAAAATATCACTACTATTTGCTATATCGGCTACGTGCCACTGAAATTTGGGGAAATTGGAACCATGCC]
[+] EMBL AK073746 [TTGCTTCCCAATCGTCCCAGCGGCGTGTGCCCCTCACACCCTCGTCCAGCCAAGGCGGCGGC GCACAGCCAGGAGAAGCCGTCGAGCGGCGGCGCACC GCGCACCGCGCAC GGAGCACCCCTCCCCCCCCTGTTACCGTCCCCTCCCGCTGCAGAAGGCGCCGGCGCACGGCGTCGTCCCATCCCTAATTCCGGCCCCCCCTCTGGTTCACTCCCCACGTTTGAAGTCAGCTTGGTTCTGACTCCAGGGATCTCAACTATCCTGTCCAGGATCAAGACCAAACCCGTCAGCCATCATGCAGGCTAGCGACAGGTTCAACATAAATTCTCAACTTGAGCATCTTCAAGCGAAATATGTGGGCACAGGGCATGCTGACTTGAATCGATTTGAATGGGCAGTAAACATCCAAAGGGATAGCTATGCATCCTATATTGGGCACTATCCAATGCTGGCATATTTTTCCATTGCTGAGAATGAATCAATTGGAAGAGAGCGTTACAATTTTATGCAGAAAATGCTACTTCCGTGTGGTCTGCCTCCTGAGAGAGACGAAGATTGAGGTGGCCTTCGGGTCTGGCGTTCAGTGTTACTGCAACTACTGGAACCTAGGGTTCAGTATCAGTTTGATATCCAAAGCAAGATCAAACTAATCTTTGCCTAGCCACCTACTACTACTATGTAAGACTCTGTCCATCTTGAACATCTGAAGCACTCTGTGTACCCTTTTCGAACATGTTCATCAGTAATGTTCGGCGCATGTGTGTAACGGATCTTTTAGTTAAGGTGAATGTTGAGGGACAAAATGTTTCTGGAGCGATCATTCATATGTTTGCATAAGCTCCTTGCCGCTGCAAATATGGCATATTAGAAAAATATCACTACTATTTGCTATATCGGCTACGTGCCACTGAAATTTGGGGAAATTGGAACCATGCC]
[+] EMBL AU183336 [ TGCTTCCCAATCGTCCCAGCGGCGTGTGCCCCTCACACCCTCGTCCAGCCAAGGCGGAGGCAGCACAGCCAGGAGAAGCCGTCGAGCGGCGGCGCACCAGCGCACCGCACACNGGAGCACCCCTCCCCCCCCTGTTACCGTCCCCTCCCGCTGCAGAAGGCGCCGGCGCACGGCGTCGTCCCATCCCTAATTCCGGCCCCCCCTCTGGTTCACTCCCCACGTTTGAAGTCAGCTTGGTTCTGACTCCAGGGATCTCAACTATCCTGTCCAGGATCAAGACCAAACCCGTCAGCCATCATGCAGGCTAGCGACAGGTTCAACATAAATTCTCAACTTGAGCATCTTCAAGCGAAATATGTGGGCACAGGGCATGCTGACTTGAATCGATTTGAATGGGCAGTAAACATCCAAAGGGATAGCTATGCATCCTA ]
[+] EMBL AU164928 [ TGTTTCTGGAGCGATCATTCATATGTTTGCATAAGCNCCTTGCCGCTGCAAATATGGCATATTAGAAAAATATCACTACTATTTGCTAaaaa ]
consensusID : consensus_9278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence
[CGGCGCACCGCGCACCGCGCACGGAGCACCCCTCCCCCCCCTGTTACCGTCCCCTCCCGCTGCAGAAGGCGCCGGCGCACGGCGTCGTCCCATCCCTAATTCCGGCCCCCCCTCTGGTTCACTCCCCACGTTTGAAGTCAGGGATCTCAACTATCCTGTCCAGGATCAAGACCAAACCCGTCAGCCATCATGCAGGCTAGCGACAGGTTCAACATAAATTCTCAACTTGAGCATCTTCAAGCGAAATATGTGGGCACAGGGCATGCTGACTTGAATCGATTTGAATGGGCAGTAAACATCCAAAGGGATAGCTATGCATCCTATATTGGGCACTATCCAATGCTGGCATATTTTTCCATTGCTGAGAATGAATCAATTGGAAGAGAGCGTTACAATTTTATGCAGAAAATGCTACTTCCGTGTGGTCTGCCTCCTGAGAGAGACGAAGATTGAGGTGGCCTTCGGGTCTGGCGTTCAGTGTTACTGCAACTACTGGAACCTAGGGTTCAGTATCAGTTTGATATCCAAAGCAAGATCAAACTAATCTTTGCCTAGCCACCTACTACTACTATGTAAGACTCTGTCCATCTTGAACATCTGAAACACTCTGTGTACCCTTTTCGAACATGTTCATCAGTAATGTTCGGCGCATGTGTGTAACGGATCTTTTAGTTAAGGTGAATGTTGNNGGGCCNNANNANANNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA756928 [CGGCGCACCGCGCACCGCGCACGGAGCACCCCTCCCCCCCCTGTTACCGTCCCCTCCCGCTGCAGAAGGCGCCGGCGCACGGCGTCGTCCCATCCCTAATTCCGGCCCCCCCTCTGGTTCACTCCCCACGTTTGAAGTCAGGGATCTCAACTATCCTGTCCAGGATCAAGACCAAACCCGTCAGCCATCATGCAGGCTAGCGACAGGTTCAACATAAATTCTCAACTTGAGCATCTTCAAGCGAAATATGTGGGCACAGGGCATGCTGACTTGAATCGATTTGAATGGGCAGTAAACATCCAAAGGGATAGCTATGCATCCTATATTGGGCACTATCCAATGCTGGCATATTTTTCCATTGCTGAGAATGAATCAATTGGAAGAGAGCGTTACAATTTTATGCAGAAAATGCTACTTCCGTGTGGTCTGCCTCCTGAGAGAGACGAAGATTGAGGTGGCCTTCGGGTCTGGCGTTCAGTGTTACTGCAACTACTGGAACCTAGGGTTCAGTATCAGTTTGATATCCAAAGCAAGATCAAACTAATCTTTGCCTAGCCACCTACTACTACTATGTAAGACTCTGTCCATCTTGAACATCTGAAACACTCTGTGTACCCTTTTCGAACATGTTCATCAGTAATGTTCGGCGCATGTGTGTAACGGATCTTTTAGTTAAGGTGAATGTTGNNGGGCCNNANNANANNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL AA750238 [ CCTGAGAGAGACGAAGATTGAGGTGGCCTTCGGGTCTGGCGTTCAGTGTTACTGCAACTACTGGAACCTAGGGTTCAGTATCAGTTTGATATCCAAAGCAAGATCAAACTAATCTTTGCCTAGCCACCTACTACTACTATGTAAGACTCTGTCCATCTTGA ]
consensusID : consensus_9278#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence
[CGTGCCAACGTACCTTGGAACCCTATGGCGCTTCAGTATTCAGCGTTTGAGTATTCCAAAGCCACAGAGTCACAACTAATCTTTGCCTAGCCCACCTACTACGTACACGTAGTGGTAAGACCTCTGCTCCATCTTGAACATTCTGAACACTCTGTGTACCCTTTTCGAACATGTTCATCAGTAATGTTCGGCGCCATGCTGTGTAACGGATCTTTTAGTTAAAAAAAA]
[+] EMBL BQ907128 [CGTGCCAACGTACCTTGGAACCCTATGGCGCTTCAGTATTCAGCGTTTGAGTATTCCAAAGCCACAGAGTCACAACTAATCTTTGCCTAGCCCACCTACTACGTACACGTAGTGGTAAGACCTCTGCTCCATCTTGAACATTCTGAACACTCTGTGTACCCTTTTCGAACATGTTCATCAGTAATGTTCGGCGCCATGCTGTGTAACGGATCTTTTAGTTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9278#0 TTGCTTCCCAATCGTCCCAGCGGCGTGTGCCCCTCACACCCTCGTCCAGCCAAGGCGGCG 60
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 GCGCACAGCCAGGAGAAGCCGTCGAGCGGCGGCGCACCGCGCACCGCGCACGGAGCACCC 120
consensus_9278#1 -----------------------------CGGCGCACCGCGCACCGCGCACGGAGCACCC 31
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 CTCCCCCCCCTGTTACCGTCCCCTCCCGCTGCAGAAGGCGCCGGCGCACGGCGTCGTCCC 180
consensus_9278#1 CTCCCCCCCCTGTTACCGTCCCCTCCCGCTGCAGAAGGCGCCGGCGCACGGCGTCGTCCC 91
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 ATCCCTAATTCCGGCCCCCCCTCTGGTTCACTCCCCACGTTTGAAGTCAGCTTGGTTCTG 240
consensus_9278#1 ATCCCTAATTCCGGCCCCCCCTCTGGTTCACTCCCCACGTTTGAAGTCAG---------- 141
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 ACTCCAGGGATCTCAACTATCCTGTCCAGGATCAAGACCAAACCCGTCAGCCATCATGCA 300
consensus_9278#1 -------GGATCTCAACTATCCTGTCCAGGATCAAGACCAAACCCGTCAGCCATCATGCA 194
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 GGCTAGCGACAGGTTCAACATAAATTCTCAACTTGAGCATCTTCAAGCGAAATATGTGGG 360
consensus_9278#1 GGCTAGCGACAGGTTCAACATAAATTCTCAACTTGAGCATCTTCAAGCGAAATATGTGGG 254
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 CACAGGGCATGCTGACTTGAATCGATTTGAATGGGCAGTAAACATCCAAAGGGATAGCTA 420
consensus_9278#1 CACAGGGCATGCTGACTTGAATCGATTTGAATGGGCAGTAAACATCCAAAGGGATAGCTA 314
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 TGCATCCTATATTGGGCACTATCCAATGCTGGCATATTTTTCCATTGCTGAGAATGAATC 480
consensus_9278#1 TGCATCCTATATTGGGCACTATCCAATGCTGGCATATTTTTCCATTGCTGAGAATGAATC 374
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 AATTGGAAGAGAGCGTTACAATTTTATGCAGAAAATGCTACTTCCGTGTGGTCTGCCTCC 540
consensus_9278#1 AATTGGAAGAGAGCGTTACAATTTTATGCAGAAAATGCTACTTCCGTGTGGTCTGCCTCC 434
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 TGAGAGAGACGAAGATTGAGGTGGCCTTCGGGTCTGGCGTTCAGTGTTACTGCAACTACT 600
consensus_9278#1 TGAGAGAGACGAAGATTGAGGTGGCCTTCGGGTCTGGCGTTCAGTGTTACTGCAACTACT 494
consensus_9278#2 ----------------------------CGTG-CCAACGTACCTTGGAACC----CTATG 27
** * * *** * ** ** ***
consensus_9278#0 GGAACCTAGGGTTCAGTATCAGTTTGATATCCAAAGC---AAGATCA-AACTAATCTTTG 656
consensus_9278#1 GGAACCTAGGGTTCAGTATCAGTTTGATATCCAAAGC---AAGATCA-AACTAATCTTTG 550
consensus_9278#2 GCGCTTCAGTATTCAGCGTTTGAGTATT--CCAAAGCCACAGAGTCACAACTAATCTTTG 85
* ** ***** * * * * ******* * *** ************
consensus_9278#0 CCTAGCC-ACCTACTACTACTATGTA------AGAC-TCTG-TCCATCTTGAACATCTGA 707
consensus_9278#1 CCTAGCC-ACCTACTACTACTATGTA------AGAC-TCTG-TCCATCTTGAACATCTGA 601
consensus_9278#2 CCTAGCCCACCTACTACGTACACGTAGTGGTAAGACCTCTGCTCCATCTTGAACATTCTG 145
******* ********* * *** **** **** **************
consensus_9278#0 AGCACTCTGTGTACCCTTTTCGAACATGTTCATCAGTAATGTTCGGCGC-ATG-TGTGTA 765
consensus_9278#1 AACACTCTGTGTACCCTTTTCGAACATGTTCATCAGTAATGTTCGGCGC-ATG-TGTGTA 659
consensus_9278#2 AACACTCTGTGTACCCTTTTCGAACATGTTCATCAGTAATGTTCGGCGCCATGCTGTGTA 205
* *********************************************** *** ******
consensus_9278#0 ACGGATCTTTTAGTTAAGGTGAATGTTGAGGGACAAAATGTTTCTGGAGCGATCATTCAT 825
consensus_9278#1 ACGGATCTTTTAGTTAAGGTGAATGTTGNNGGGCCNNANNANANNNNNNNNNNNNNNNNN 719
consensus_9278#2 ACGGATCTTTTAGTTAAAAAAAA------------------------------------- 228
***************** **
consensus_9278#0 ATGTTTGCATAAGCTCCTTGCCGCTGCAAATATGGCATATTAGAAAAATATCACTACTAT 885
consensus_9278#1 NNNNNNNNN--------------------------------------------------- 728
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 TTGCTATATCGGCTACGTGCCACTGAAATTTGGGGAAATTGGAACCATGCC 936
consensus_9278#1 ---------------------------------------------------
consensus_9278#2 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||