cluster # 9279

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Oryza sativa
cluster # 9279 cluster # 9279 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9279#0 length = 805 sequences # 5

consensus_9279#1 length = 168 sequences # 1

consensusID : consensus_9279#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 805
fasta sequence

                              [ATCAGGCCACACAATTTCAGTCCAAGTACTAGTGCAAGATCGATCAAGTGTGAGGCTGGGTTGAGACAATGGCTGGGTTTCACCGCCTCTCCCTCGCCTTCCTCCTGCTCGTCGTCGTCGTCGCCGGCGACCTGATGATCTCCACCGCCACCTCCATGGCGGTGGGTACATCGGACGACGACGGCCCACCTAT-CAAGA-TCAGTATGCGGTACGCCAACG-CGGAGGAGTCGCGGTGGCT-CGACAGCTGGGCGGAGAAGA-CGCAGTCGG-CCGGCGG-TG-GCGGCGGCGACGACTTCGAGGTTCGCCGGGCCACCGACGAGGAGTCGGCGCGGCTGAACCGCATGCGCGCCGACGCCGACAGGAGGGCGAGGGA-CGG-CAG-CGGCTT-CGGCTT-CGACGG-CCACAT-CGAGTTCGACGATGA-CCATCC-TTTTGGTAGAGTCGTCGTGACGGACTT-CCCTCCGTCGT-CCAAGCCGAACGATGATCTGTGAAGCCAGAACAAGTCCCACTCGCGCCGAGGATGATGAGTTCCAGTTTCCTTAGGACGACGAATTAAGCTGAATACCAACAAGCTTATGGATTGGAGGCCGGCGGGTTCATTGCACCAGAGTCTTCAGTTTCTAGCTTTGGCTCTTCAAGCCTTAGTATCCTGGGCAAGACCCAAACTATCTTCAGTTTCTATCATGTCGTGTCCTCTTAGCTTAGTTAAACCCAACCTCTTAAAGGTAGTGGTTTTCAGTCAGTGTAATCGGTCTTCGGTCAGTTAAAGGTGCCTTTTCAGTTTCAGTTTGTTCAAAAAAAGTTCCTCTGTTCT]

[+] EMBL AK106780             [ATCAGGCCACACAATTTCAGTCCAAGTACTAGTGCAAGATCGATCAAGTGTGAGGCTGGGTTGAGACAATGGCTGGGTTTCACCGCCTCTCCCTCGCCTTCCTCCTGCTCGTCGTCGTCGTCGCCGGCGACCTGATGATCTCCACCGCCACCTCCATGGCGGTGGGTACATCGGACGACGACGGCCCACCTAT CAAGA TCAGTATGCGGTACGCCAACG CGGAGGAGTCGCGGTGGCT CGACAGCTGGGCGGAGAAGA CGCAGTCGG CCGGCGG TG GCGGCGGCGACGACTTCGAGGTTCGCCGGGCCACCGACGAGGAGTCGGCGCGGCTGAACCGCATGCGCGCCGACGCCGACAGGAGGGCGAGGGA CGG CAG CGGCTT CGGCTT CGACGG CCACAT CGAGTTCGACGATGA CCATCC TTTTGGTAGAGTCGTCGTGACGGACTT CCCTCCGTCGT CCAAGCCGAACGATGATCTGTGAAGCCAGAACAAGTCCCACTCGCGCCGAGGATGATGAGTTCCAGTTTCCTTAGGACGACGAATTAAGCTGAATACCAACAAGCTTATGGATTGGAGGCCGGCGGGTTCATTGCACCAGAGTCTTCAGTTTCTAGCTTTGGCTCTTCAAGCCTTAGTATCCTGGGCAAGACCCAAACTATCTTCAGTTTCTATCATGTCGTGTCCTCTTAGCTTAGTTAAACCCAACCTCTTAAAGGTAGTGGTTTTCAGTCAGTGTAATCGGTCTTCGGTCAGTTAAAGGTGCCTTTTCAGTTTCAGTTTGTTCAATTGCAGTTCCTCTGTTCT]
[+] EMBL C74021               [         anttntnTCAGTCCAAGTACTAGTGCAAGATCGATCAAGTGTGAGGCTGGGTTGAGACAATGGCTGGGTTTCACCGCCTCTCCCTCGCCTTCCTCCTGCTCGTCGTCGTCGTCGCCGGCGACCTGATGATCTCCACCGCCACCTCCATGGCGGTGGGTACATCGGACGACGACGGCCCACCTAT CAAGA TCAGTATGCGGTAC NCAACG CGGAGGAGTCGCGGTGGCT CGACAGCTGGGCGGAGAAGA CG A TGGN ANGNAGGTTG GCGGCGGCGACGACTTCGAAGTTCGCCGGGCCACCGACGAGGAGTCGGCGCGGCTGAACCGCATGCGCGCCGACGCCGAAAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU082239             [                    TCCAAGTACTAGTGCAAGATCGATCAAGTGTGAGGCTGGGTTGAGACAATGGCTGGGTTTCACCGCCTCTCCCTCGCCTTCCTCCTGCTCGTCGTCGTCGTCGCCGGCGACCTGATGATCTCCACCGCCACCTCCATGGCGGTGGGTACATCGGACGACGACGGCCCACCTAT CAAGA TCAGTATGCGGTACGCCAACG CGGAGGAGTCGCGGTGGCT CGACAGCTGGGCGGAGAAGA CGCAGTCGG CCGGCGG TG GCGGCGGCGACGACTTCGAGGTTCGCCGGGCCACCGACGAGGAGTCGGCGCGGCTGAACCGCATGCGCGCCGACGCCGACAGGAGGGCGAGGGA CGG CAG CGGCTT CGGCTT CGACGG CCACAT CGAGTTCGACGATGA CCATCC TTTTGGTAGAGTCGTCGTGACGGACTT CCCTCCGTCGT CCAAGCCGAACGATGATCTGTGAAGCCAGAACAAGTCCCACTCGCGCCGAGGATGATGAGTT CAGTTTCCTTAGGACGACGAATTAAGCTGAATACCAACAAG                                                                                                                                                                                                                                                  ]
[+] EMBL AU029334             [                                                                                                                                                                                   GACNGCCCACTTATCCAAGATTCATTATGCGGTACGCCAACGCCGGAGGATTCGCNTTGGCTCCAACAGCTGGGCGGAGAANACCGCATTCGGCCCGGCGT TGNCCGGCGGCGACGACTTCGAGNTTCGCCGGGCCACCGACGAGGATTCGGCNCGGCTGAACCCCATGCGCGCCGACGCCGACAGGAGGGCGAGGGACCGGCCAGCCGGCTTCCGGCTTCCGACGGCCCACATCCGANTTCGACGATGACCCATCCTTTTTGTTAGAGTCNTCTTGACGGANTTCCCCTCCNTCGTCCCAAGCCGAACGATGATCTGTGAAGCCAGAACAAGTCCCACTCGCGCCGAGGATGATGAGTTCCAGTTTCCTTAGGACGACGAATTAAGCTGAATACCAACAAGCTTATGGATTGGAGGCCGGCGGGTTCATTGCACCAGAGTCTTCAGTTTCTAGCTTTGGCTCTTCAAGCCTTAGTATCCTGGGCAAGACCCAAACTATCTTCAGTTTCTATCATGTCGTGTCCTCTTAGCTTAGTTAAACCCAACCTCTTAAAGGTAGTGGTTTTCAGTCAGTGTAATCGGTCTTCGGTCAGTTAAAGGTGCCTTTTCAGTTTCAGTTTGTTCAAAAAAAaaaa         ]
[+] EMBL AU082240             [                                                                                                                                                                                                                                                                                                                                                GCTGAACCGCATGCGCGCCGACGCCGACAGGAGGGCGAGGGA CGG CAG CGGCTT CGGCTT CGACGG CCACAT CGAGTTCGACGATGA CCATCC TTTTGGTAGAGTCGTCGTGACGGACTT CCCTCCGTCGT CCAAGCCGAACGATGATCTGTGAAGCCAGAACAAGTCCCACTCGCGCCGAGGATGATGAGTTCCAGTTTCCTTAGGACGACGAATTAAGCTGAATACCAACAAGCTTATGGATTGGAGGCCGGCGGGTTCATTGCACCAGAGTCTTCAGTTTCTAGCTTTGGCTCTTCAAGCCTTAGTATCCTGGGCAAGACCCAAACTATCTTCAGTTTCTATCATGTCGTGTCCTCTTAGCTTAGTTAAACCCAACCTCTTAAAGGTAGTGGTTTTCAGTCAGTGTAATCGGTCTTCGGTCAGTTAAAGGTGCCTTTTCAGTTTCAGTTTGTTCAAAAAAA             ]




>consensus_9279#0
ATCAGGCCACACAATTTCAGTCCAAGTACTAGTGCAAGATCGATCAAGTGTGAGGCTGGG
TTGAGACAATGGCTGGGTTTCACCGCCTCTCCCTCGCCTTCCTCCTGCTCGTCGTCGTCG
TCGCCGGCGACCTGATGATCTCCACCGCCACCTCCATGGCGGTGGGTACATCGGACGACG
ACGGCCCACCTATCAAGATCAGTATGCGGTACGCCAACGCGGAGGAGTCGCGGTGGCTCG
ACAGCTGGGCGGAGAAGACGCAGTCGGCCGGCGGTGGCGGCGGCGACGACTTCGAGGTTC
GCCGGGCCACCGACGAGGAGTCGGCGCGGCTGAACCGCATGCGCGCCGACGCCGACAGGA
GGGCGAGGGACGGCAGCGGCTTCGGCTTCGACGGCCACATCGAGTTCGACGATGACCATC
CTTTTGGTAGAGTCGTCGTGACGGACTTCCCTCCGTCGTCCAAGCCGAACGATGATCTGT
GAAGCCAGAACAAGTCCCACTCGCGCCGAGGATGATGAGTTCCAGTTTCCTTAGGACGAC
GAATTAAGCTGAATACCAACAAGCTTATGGATTGGAGGCCGGCGGGTTCATTGCACCAGA
GTCTTCAGTTTCTAGCTTTGGCTCTTCAAGCCTTAGTATCCTGGGCAAGACCCAAACTAT
CTTCAGTTTCTATCATGTCGTGTCCTCTTAGCTTAGTTAAACCCAACCTCTTAAAGGTAG
TGGTTTTCAGTCAGTGTAATCGGTCTTCGGTCAGTTAAAGGTGCCTTTTCAGTTTCAGTT
TGTTCAAAAAAAGTTCCTCTGTTCT

consensusID : consensus_9279#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [GATCTCCACCGCCACCTCCATGGCGGTGGGTACATCGGACGACGACGGCCCACCTATCAAGATCACTATGCGGTACGCCAACGCGGAGGAGTCGCGTGGCGCGTGCTCGACAGCTGGGCGAGAACGCAGTCGCGCGTGCGCGCGACGACTCGAGCGCCGGCACGACGG]

[+] EMBL AA750367             [GATCTCCACCGCCACCTCCATGGCGGTGGGTACATCGGACGACGACGGCCCACCTATCAAGATCACTATGCGGTACGCCAACGCGGAGGAGTCGCGTGGCGCGTGCTCGACAGCTGGGCGAGAACGCAGTCGCGCGTGCGCGCGACGACTCGAGCGCCGGCACGACGG]




>consensus_9279#1
GATCTCCACCGCCACCTCCATGGCGGTGGGTACATCGGACGACGACGGCCCACCTATCAA
GATCACTATGCGGTACGCCAACGCGGAGGAGTCGCGTGGCGCGTGCTCGACAGCTGGGCG
AGAACGCAGTCGCGCGTGCGCGCGACGACTCGAGCGCCGGCACGACGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9279#0      ATCAGGCCACACAATTTCAGTCCAAGTACTAGTGCAAGATCGATCAAGTGTGAGGCTGGG 60
consensus_9279#1      ------------------------------------------------------------
                                                                                  

consensus_9279#0      TTGAGACAATGGCTGGGTTTCACCGCCTCTCCCTCGCCTTCCTCCTGCTCGTCGTCGTCG 120
consensus_9279#1      ------------------------------------------------------------
                                                                                  

consensus_9279#0      TCGCCGGCGACCTGATGATCTCCACCGCCACCTCCATGGCGGTGGGTACATCGGACGACG 180
consensus_9279#1      ----------------GATCTCCACCGCCACCTCCATGGCGGTGGGTACATCGGACGACG 44
                                      ********************************************

consensus_9279#0      ACGGCCCACCTATCAAGATCAGTATGCGGTACGCCAACGCGGAGGAGTCGCGGTG----- 235
consensus_9279#1      ACGGCCCACCTATCAAGATCACTATGCGGTACGCCAACGCGGAGGAGTCGCGTGGCGCGT 104
                      ********************* ******************************  *     

consensus_9279#0      GCTCGACAGCTGGGCGGAGAAGACGCAGTCGGCCGGCGGTGGCGGCGGCGACGACTTCGA 295
consensus_9279#1      GCTCGACAGCTGGGCG---AGAACGCAGTCGCGCGTGCGCG-------CGACGACT-CGA 153
                      ****************   *  *********  **   * *       ******** ***

consensus_9279#0      GGTTCGCCGGGCCACCGACGAGGAGTCGGCGCGGCTGAACCGCATGCGCGCCGACGCCGA 355
consensus_9279#1      G---CGCCGGCACGACGG------------------------------------------ 168
                      *   ******  *  **                                           

consensus_9279#0      CAGGAGGGCGAGGGACGGCAGCGGCTTCGGCTTCGACGGCCACATCGAGTTCGACGATGA 415
consensus_9279#1      ------------------------------------------------------------
                                                                                  

consensus_9279#0      CCATCCTTTTGGTAGAGTCGTCGTGACGGACTTCCCTCCGTCGTCCAAGCCGAACGATGA 475
consensus_9279#1      ------------------------------------------------------------
                                                                                  

consensus_9279#0      TCTGTGAAGCCAGAACAAGTCCCACTCGCGCCGAGGATGATGAGTTCCAGTTTCCTTAGG 535
consensus_9279#1      ------------------------------------------------------------
                                                                                  

consensus_9279#0      ACGACGAATTAAGCTGAATACCAACAAGCTTATGGATTGGAGGCCGGCGGGTTCATTGCA 595
consensus_9279#1      ------------------------------------------------------------
                                                                                  

consensus_9279#0      CCAGAGTCTTCAGTTTCTAGCTTTGGCTCTTCAAGCCTTAGTATCCTGGGCAAGACCCAA 655
consensus_9279#1      ------------------------------------------------------------
                                                                                  

consensus_9279#0      ACTATCTTCAGTTTCTATCATGTCGTGTCCTCTTAGCTTAGTTAAACCCAACCTCTTAAA 715
consensus_9279#1      ------------------------------------------------------------
                                                                                  

consensus_9279#0      GGTAGTGGTTTTCAGTCAGTGTAATCGGTCTTCGGTCAGTTAAAGGTGCCTTTTCAGTTT 775
consensus_9279#1      ------------------------------------------------------------
                                                                                  

consensus_9279#0      CAGTTTGTTCAAAAAAAGTTCCTCTGTTCT 805
consensus_9279#1      ------------------------------