cluster # 928

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Oryza sativa
cluster # 928 cluster # 928 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_928#0 length = 561 sequences # 1

consensus_928#1 length = 516 sequences # 1

consensusID : consensus_928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence

                              [CACATCTTAATTCCTCTTCTGACCAAGATCCAAAGAAAGTTACAAAGCCCATATGATGGTGGCCTCCCCTGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTCTTCTTCCCCGGCGCCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAACTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTCCTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTACTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAATTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCGCTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATATATATGTGAAAGTTGCATGTGTCTTCTGTCGAAAAATGTTCCGTCGTTTCTTGTACGTAACTCGGTCAATCAGTTATGAAAGATCGAAT]

[+] EMBL AK111239             [CACATCTTAATTCCTCTTCTGACCAAGATCCAAAGAAAGTTACAAAGCCCATATGATGGTGGCCTCCCCTGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTCTTCTTCCCCGGCGCCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAACTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTCCTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTACTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAATTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCGCTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATATATATGTGAAAGTTGCATGTGTCTTCTGTCGAAAAATGTTCCGTCGTTTCTTGTACGTAACTCGGTCAATCAGTTATGAAAGATCGAAT]




>consensus_928#0
CACATCTTAATTCCTCTTCTGACCAAGATCCAAAGAAAGTTACAAAGCCCATATGATGGT
GGCCTCCCCTGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTC
TTCTTCCCCGGCGCCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAA
CTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTC
CTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTA
CTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAA
TTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCG
CTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATATATATGTG
AAAGTTGCATGTGTCTTCTGTCGAAAAATGTTCCGTCGTTTCTTGTACGTAACTCGGTCA
ATCAGTTATGAAAGATCGAAT

consensusID : consensus_928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [TGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTCTTCTTCCCCGGCGGCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAACTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTCCTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTACTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAATTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCGCTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATTATATATGTGAAAAGTGCATGTGTCTTCTGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA758576             [TGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTCTTCTTCCCCGGCGGCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAACTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTCCTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTACTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAATTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCGCTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATTATATATGTGAAAAGTGCATGTGTCTTCTGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_928#1
TGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTCTTCTTCCCC
GGCGGCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAACTCGTCGTG
CGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTCCTCATGCAC
GAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTACTGCCGCTC
CAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAATTAGAAGCT
TGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCGCTTGTGCTT
GCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATTATATATGTGAAAAGTGC
ATGTGTCTTCTGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_928#0      CACATCTTAATTCCTCTTCTGACCAAGATCCAAAGAAAGTTACAAAGCCCATATGATGGT 60
consensus_928#1      ------------------------------------------------------------
                                                                                 

consensus_928#0      GGCCTCCCCTGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTC 120
consensus_928#1      ---------TGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTC 51
                              ***************************************************

consensus_928#0      TTCTTCCCCGGCGCCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAA 180
consensus_928#1      TTCTTCCCCGGCGGCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAA 111
                     ************* **********************************************

consensus_928#0      CTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTC 240
consensus_928#1      CTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTC 171
                     ************************************************************

consensus_928#0      CTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTA 300
consensus_928#1      CTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTA 231
                     ************************************************************

consensus_928#0      CTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAA 360
consensus_928#1      CTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAA 291
                     ************************************************************

consensus_928#0      TTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCG 420
consensus_928#1      TTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCG 351
                     ************************************************************

consensus_928#0      CTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATAT-ATATATGT 479
consensus_928#1      CTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATTATATATGT 411
                     *************************************************** ********

consensus_928#0      GAAAGTTGCATGTGTCTTCTGTCGAAAAATGTTCCGTCGTTTCTTGTACGTAACTCGGTC 539
consensus_928#1      GAAAAGTGCATGTGTCTTCTGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 471
                     ****  ******************                                    

consensus_928#0      AATCAGTTATGAAAGATCGAAT----------------------- 561
consensus_928#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 516