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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1328 fasta sequence
[GCCACCACTCCATTGCCATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTT-CCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCTGGGGCG-GCGGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGGACCACCCGCGGCCGCCTCCGCCAAGCCCCTCGTCGCGGCCGCCAACCCGCCGCTGCTGCCGGTGGTGGCTCCGGCGGCGGCGGCGCCCAAGTCGTCGTCAGGGGCCGTGGAAGAGAGCAAAGAGGGTGTGGAAGAGAGCAACAAGAGCAATGTGTTGACCATTGGCAGCATCAGGAGCACGCTGATGAAGCATGAGGACACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGCTGCTGCTAACATCAACATAAACAAAAGGATCTGGGATGTGTACTTTGGTGACCTTCTGCCAAGGCTTGTGAAGGAAGGAAGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTTAATTCTGCAGGCACTCTCCAAGAGGATTCACTATGGCAAGTATGTGGCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATCTTAAACAAGGACAGTGACAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTCGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATCTACAAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCTGTAGTTTGCAGTTTAGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTATTTCTATGGTGAAACAT]
[+] EMBL AK105512 [GCCACCACTCCATTGCCATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTTCCCCTGGACAAGGCCGCGGCCCGCTCCACCCCACTCGCGCTCCCCGCCGCTGGGGCG GCGGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGGACCACCCGCGGCCGCCTCCGCCAAGCCCCTCGTCGCGGCCGCCAACCCGCCGCTGCTGCCGGTGGTGGCTCCGGCGGCGGCGGCGCCCAAGTCGTCGTCAGGGGCCGTGGAAGAGAGCAAAGAGGGTGTGGAAGAGAGCAACAAGAGCAATGTGTTGACCATTGGCAGCATCAGGAGCACGCTGATGAAGCATGAGGACACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCCGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGCTGCTGCTAACATCAACATAAACAAAAGGATCTGGGATGTGTACTTTGGTGACCTTCTGCCAAGGCTTGTGAAGGAAGGAAGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTTAATTCTGCAGGCACTCTCCAAGAGGATTCACTATGGCAAGTATGTGGCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATCTTAAACAAGGACAGTGACAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTCGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATCTACAAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCTGTAGTTTGCAGTTTAGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTATTTCTATGGTGAAACAT]
[+] EMBL BI799376 [ ATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTT CCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCTGGGGCGCGCGGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGG ]
[+] EMBL BI799363 [ ATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTT CCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCT GGGC GCGGC GCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGG ]
[+] EMBL AA751486 [ AGCAATGTGTTGACCATTGGCAGCATCAGGNGCACGCTGATGAAGCATGAGGNCACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGCTGCTGCTAACATCAACATAAACAAAAGGNTCTGGGATGTGTACTTTGGTGACCTTCTGCCAAGGCTTGTGAAGGAAGGNNGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTTAATTCTGCAGGCACTCTCCAAGAGGATTCACTNTGGCAAG ]
[+] EMBL AA750462 [ AAGCATGAGGACACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATC ]
consensusID : consensus_9281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CCAGAGGCCGAGCCAAGGGGGGCCATGTTAATTCTGCAGGCCCTCTCCAAGAGGATTCACTATGGCAAGTATGTGCCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATTTTAAACAAGGACAGTGCCAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTNGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATTTACGAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCAGTAGTTTGCAGTTTGGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTAAAAAAAAAAAAAA]
[-] EMBL CA759527 [CCAGAGGCCGAGCCAAGGGGGGCCATGTTAATTCTGCAGGCCCTCTCCAAGAGGATTCACTATGGCAAGTATGTGCCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATTTTAAACAAGGACAGTGCCAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTNGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATTTACGAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCAGTAGTTTGCAGTTTGGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9281#0 GCCACCACTCCATTGCCATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGC 60
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 TTCCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCTGGGGCGGC 120
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 GGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGGACCACCCGCGGCCGCCTCCGC 180
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 CAAGCCCCTCGTCGCGGCCGCCAACCCGCCGCTGCTGCCGGTGGTGGCTCCGGCGGCGGC 240
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 GGCGCCCAAGTCGTCGTCAGGGGCCGTGGAAGAGAGCAAAGAGGGTGTGGAAGAGAGCAA 300
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 CAAGAGCAATGTGTTGACCATTGGCAGCATCAGGAGCACGCTGATGAAGCATGAGGACAC 360
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 CATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCC 420
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 CAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGAC 480
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 CGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCC 540
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 TGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGC 600
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 TGCTGCTAACATCAACATAAACAAAAGGATCTGGGATGTGTACTTTGGTGACCTTCTGCC 660
consensus_9281#1 ------------------------------------------------------------
consensus_9281#0 AAGGCTTGTGAAGGAAGGAAGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTT 720
consensus_9281#1 ------------------------------CCAGAGGCCGAGC-CAAGGGGGGCCATGTT 29
* * ***** ** * *** ******
consensus_9281#0 AATTCTGCAGGCACTCTCCAAGAGGATTCACTATGGCAAGTATGTGGCAGAGGCTAAGTT 780
consensus_9281#1 AATTCTGCAGGCCCTCTCCAAGAGGATTCACTATGGCAAGTATGTGCCAGAGGCTAAGTT 89
************ ********************************* *************
consensus_9281#0 CCAGGGGGCACCTGACACGTACACGCCTGCAATCTTAAACAAGGACAGTGACAAGCTGAT 840
consensus_9281#1 CCAGGGGGCACCTGACACGTACACGCCTGCAATTTTAAACAAGGACAGTGCCAAGCTGAT 149
********************************* **************** *********
consensus_9281#0 GGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGC 900
consensus_9281#1 GGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGC 209
************************************************************
consensus_9281#0 CATGACCTTCGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGA 960
consensus_9281#1 CATGACCTTNGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGA 269
********* **************************************************
consensus_9281#0 GCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCA 1020
consensus_9281#1 GCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCA 329
************************************************************
consensus_9281#0 AGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGT 1080
consensus_9281#1 AGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGT 389
************************************************************
consensus_9281#0 CCATCTACAAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTT 1140
consensus_9281#1 CCATTTACGAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTT 449
**** *** ***************************************************
consensus_9281#0 ATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCTGTAGTTTGCAGTTT 1200
consensus_9281#1 ATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCAGTAGTTTGCAGTTT 509
********************************************* **************
consensus_9281#0 AGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGA 1260
consensus_9281#1 GGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGA 569
***********************************************************
consensus_9281#0 ATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTATTTCTATGG 1320
consensus_9281#1 ATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTAAAAAAAAAA 629
*************************************************** *
consensus_9281#0 TGAAACAT 1328
consensus_9281#1 AAAA---- 633
**
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||