These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1340 fasta sequence [GCGTATATTCAGCTTCGGGGACTCGCTGACGGACACCGGCAACTTCCTGCTCTCCGTGCCGGAGGACTTCCCGGACCCCGCCCGCAGCCTCCCCTACGGCCAGACCTTCTTCGGCCGCCCCTCCGGCCGCTACTCCGACGGCCGCAACCTCCTCGACTTCTTCGCGGAAGCATTTGGTCTGCCGTTCGTGCCGCCGTACCTGGCTGGCGGCGACTTCCGGCAAGGCGCAAATTTCGCGGTCGGCGGCGCCACCGCCCTCAACGGATCATTCTTCCGGGACCGCGGCGTGGAGCCGACATGGACGCCGCACTCCCTCGATGAGCAGATGCAGTGGTTCAAGAAGCTACTCACTACTGTCTCCTCGTCAGAGTCCGAACTCAATGATATCATGACCAAGTCACTTTTCCTTGTGGGAGAGGTAGGCGGAAATGATTACAACCATCTAATTGTCAGGGGGAAATCTCTAGATGAGCTACACGAGCTTGTTCCTAAGGTTGTCGGTACCATAACCTCAGCTATCACGGAGCTCATAAACCTTGGAGCAAAGAAACTAGTTGTTCCAGGAAACTTTCCAATAGGCTGTGTACCATTGTATCTCTCAATCTTTCCAAGCCAAAAGGAAGACTACTATGATGAGAAAACAGGGTGCATTAAATGGTTAAATGAATTCACCGAGTACCATAATCGATTGCTTCAGGAGGAGCTGGAGAAGCTCAGGAATCTTTACCCCGATGTATCCATCATTTATGCTGATTATTATGGTGCTGCATTGAATATATTCCTTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGCTCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGACCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACGGAGGCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGAGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTATGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGAGCAATATAGATATAACAGGCCCCATCCCCTTGGACACTTTTCAAAGGTGAGAAGAGCATTGGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTTGTAGAGCAGAAATTTGCAATTGCCATGTCCATGGCTTTGCCCAACCCATTTAGTTTCTCAGAAATTTACTGCAACGGGAA] [+] EMBL CB658656 [GCGTATATTCAGCTTCGGGGACTCGCTGACGGACACCGGCAACTTCCTGCTCTCCGTGCCGGAGGACTTCCCGGACCCCGCCCGCAGCCTCCCCTACGGCCAGACCTTCTTCGGCCGCCCCTCCGGCCGCTACTCCGACGGCCGCAACCTCCTCGACTTCTTCGCGGAAGCATTTGGTCTGCCGTTCGTGCCGCCGTACCTGGCTGGCGGCGACTTCCGGCAAGGCGCAAATTTCGCGGTCGGCGGCGCCACCGCCCTCAACGGATCATTCTTCCGGGACCGCGGCGTGGAGCCGACATGGACGCCGCACTCCCTCGATGAGCAGATGCAGTGGTTCAAGAAGCTACTCACTACTGTCTCCTCGTCAGAGTCCGAACTCAATGATATCATGACCAAGTCACTTTTCCTTGTGGGAGAGGTAGGCGGAAATGATTACAACCATCTAATTGTCAGGGGGAAATCTCTAGATGAGCTACACGAGCTTGTTCCTAAGGTTGTCGGTACCATAACCTCAGCTATCACGGAGCTCATAAACCTTGGAGCAAAGAAACTAGTTGTTCCAGGAAACTTTCCAATAGGCTGTGTACCATTGTATCTCTCAATCTTTCCAAGCCAAAAGGAAGACTACTATGATGAGAAAACAGGGTGCATTAAATGGTTAAATGAATTCACCGAGTACCATAATCGATTGCTTCAGGAGGAGCTGGAGAAGCTCAGGAATCTTTACCCCGATGTATCCATCATTTATGCTGATTATTATGGTGCTGCATTG ] [+] EMBL AA750492 [ GGTACCATAACCTCAGCTATCACGGAGCTCATAAACCTTGGAGCAAAGAAACTAGTTGTTCCAGGAAACTTTCCAATAGGCTGTGTACCATTGTATCTCTCAATCTTTCCAAGCCAAAAGGAAGACTACTATGATGAGAAAACAGGGTGCATTAAATGGTTAAATGAATTCACCGAGTACCATAATCGATTGCTTCAGGAGGAGCTGGAGAAGCTCAGGAATCT ] [-] EMBL CB658657 [ TCCAATAGGCTGTGTACCATTGTATCTCTCAATCTTTCCAAGCCAAAAGGAAGACTACTATGATGAGAAAACAGGGTGCATTAAATGGTTAAATGAATTCACCGAGTACCATAATCGATTGCTTCAGGAGGAGCTGGAGAAGCTCAGGAATCTTTACCCCGATGTATCCATCATTTATGCTGATTATTATGGTGCTGCATTGAATATATTCCTTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGCTCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGACCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACGGAGGCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGAGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTATGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGAGCAATATAGATATAACAGGCCCCATCCCCTTGGACACTTTTCAAAGGTGAGAAGAGCATTGGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTTGTAGAGCAGAAATTTGCAATTGCCATGTCCATGGCTTTGCCCAACCCATTTAGTTTCTCAGAAATTTACTGCAACGGGAA] consensusID : consensus_9282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 603 fasta sequence [CTAGCTCGTGCCGAATTCGGCACGAGCTTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGCTCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGACCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACCGAGGCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGANCATACAAAGTCTCACAACTTCATCAATGTNCAGATAACCCAACAAACACTGTAACGTATGATTCTATGANCTCTTTTATTTGATCCTCTGANCTCTANGGCATGTNNAGTNTTAAGGAGCAATATAGATATNACAGGCCCCATCCCCTTGGACACTTCTCAAAGGTGAGAAGAGCATTGGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTTGTAGAGCANNNNNNNNCAATTGCCATGTCCATGNCNNNGNNNNNNNNATNNAGTTTCTCNNNNNNNTACTGCANCNNNNNNNNGNANGTACANNNNNN] [+] EMBL BE228263 [CTAGCTCGTGCCGAATTCGGCACGAGCTTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGCTCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGACCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACCGAGGCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGANCATACAAAGTCTCACAACTTCATCAATGTNCAGATAACCCAACAAACACTGTAACGTATGATTCTATGANCTCTTTTATTTGATCCTCTGANCTCTANGGCATGTNNAGTNTTAAGGAGCAATATAGATATNACAGGCCCCATCCCCTTGGACACTTC ] [+] EMBL CF196376 [ GCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGAGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTATGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGAGCAATATAGATATAACAGGCCCCATCCCCTTGGACACTTCTCAAAGGTGAGAAGAGCATTGGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTTGTAGAGCANNNNNNNNCAATTGCCATGTCCATGNCNNNGNNNNNNNNATNNAGTTTCTCNNNNNNNTACTGCANCNNNNNNNNGNANGTACANNNNNN] consensusID : consensus_9282#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [GCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGAGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTATGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGAGCAATATAGATATAACAGGCCCCATCNNNTTGGACACTTCTCAAAGGTGAGAAGAGCANNNNTNNGGGANNNNTGTACNNCN] [+] EMBL CF196366 [GCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGAGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTATGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGAGCAATATAGATATAACAGGCCCCATCNNNTTGGACACTTCTCAAAGGTGAGAAGAGCANNNNTNNGGGANNNNTGTACNNCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9282#0 GCGTATATTCAGCTTCGGGGACTCGCTGACGGACACCGGCAACTTCCTGCTCTCCGTGCC 60 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 GGAGGACTTCCCGGACCCCGCCCGCAGCCTCCCCTACGGCCAGACCTTCTTCGGCCGCCC 120 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 CTCCGGCCGCTACTCCGACGGCCGCAACCTCCTCGACTTCTTCGCGGAAGCATTTGGTCT 180 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 GCCGTTCGTGCCGCCGTACCTGGCTGGCGGCGACTTCCGGCAAGGCGCAAATTTCGCGGT 240 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 CGGCGGCGCCACCGCCCTCAACGGATCATTCTTCCGGGACCGCGGCGTGGAGCCGACATG 300 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 GACGCCGCACTCCCTCGATGAGCAGATGCAGTGGTTCAAGAAGCTACTCACTACTGTCTC 360 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 CTCGTCAGAGTCCGAACTCAATGATATCATGACCAAGTCACTTTTCCTTGTGGGAGAGGT 420 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 AGGCGGAAATGATTACAACCATCTAATTGTCAGGGGGAAATCTCTAGATGAGCTACACGA 480 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 GCTTGTTCCTAAGGTTGTCGGTACCATAACCTCAGCTATCACGGAGCTCATAAACCTTGG 540 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 AGCAAAGAAACTAGTTGTTCCAGGAAACTTTCCAATAGGCTGTGTACCATTGTATCTCTC 600 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 AATCTTTCCAAGCCAAAAGGAAGACTACTATGATGAGAAAACAGGGTGCATTAAATGGTT 660 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 AAATGAATTCACCGAGTACCATAATCGATTGCTTCAGGAGGAGCTGGAGAAGCTCAGGAA 720 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ------------------------------------------------------------ consensus_9282#0 TCTTTACCCCGATGTATCCATCATTTATGCTGATTATTATGGTGCTGCATTGAATATATT 780 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 ---------------------------------CTAGC-TCGTGCCGAATTCGGCACGAG 26 consensus_9282#0 CCTTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGC 840 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 C-TTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGC 85 consensus_9282#0 TCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGA 900 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 TCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGA 145 consensus_9282#0 CCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACGGAGGCAACCTACAAGATTAT 960 consensus_9282#2 -------------------------------------------GCAACCTACAAGATTAT 17 consensus_9282#1 CCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACCGAGGCAACCTACAAGATTAT 205 ***************** consensus_9282#0 CATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGG 1020 consensus_9282#2 CATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGG 77 consensus_9282#1 CATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGG 265 ************************************************************ consensus_9282#0 AGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTA 1080 consensus_9282#2 AGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTA 137 consensus_9282#1 ANCATACAAAGTCTCACAACTTCATCAATGTNCAGATAACCCAACAAACACTGTAACGTA 325 * ***************************** **************************** consensus_9282#0 TGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGA 1140 consensus_9282#2 TGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGA 197 consensus_9282#1 TGATTCTATGANCTCTTTTATTTGATCCTCTGANCTCTANGGCATGTNNAGTNTTAAGGA 385 *********** ********************* ***** ******* *** ******* consensus_9282#0 GCAATATAGATATAACAGGCCCCATCCCCTTGGACACTTTTCAAAGGTGAGAAGAGCATT 1200 consensus_9282#2 GCAATATAGATATAACAGGCCCCATCNNNTTGGACACTTCTCAAAGGTGAGAAGAGCANN 257 consensus_9282#1 GCAATATAGATATNACAGGCCCCATCCCCTTGGACACTTCTCAAAGGTGAGAAGAGCATT 445 ************* ************ ********** ****************** consensus_9282#0 GGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTT 1260 consensus_9282#2 NNTNNGGGANNNNTGTACNNCN-------------------------------------- 279 consensus_9282#1 GGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTT 505 * **** ***** * consensus_9282#0 GTAGAGCAGAAATTTGCAATTGCCATGTCCATGGCTTTGCCCAACCCATTTAGTTTCTCA 1320 consensus_9282#2 ------------------------------------------------------------ consensus_9282#1 GTAGAGCANNNNNNNNCAATTGCCATGTCCATGNCNNNGNNNNNNNNATNNAGTTTCTCN 565 consensus_9282#0 GAAATTTACTGCAACGGGAA------------------ 1340 consensus_9282#2 -------------------------------------- consensus_9282#1 NNNNNNTACTGCANCNNNNNNNNGNANGTACANNNNNN 603 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||