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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 929 fasta sequence
[TTTTTTGCAAATCGGCAAGAATAAACGACATTAGATAAATTACACAAGTAAACACTTCTGATACATGATACAAAAAATAATAAGAATGTTGAGAACGCAAGCTACTCTAGAAATGACTGCTGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATCATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGCAAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAATGGCCA-CCATTTCATTTGATCTTTCAACGTCATTTGTTAGACCATCCATGTGTTTATACAGCTCATTGAACTGATTCCTGAGTTCATTGTTCCGAGTCTTCAAAACTGCAATTTTCATTCCAAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCC-TCTTGCAA-TGTTCTACACTTGG-CCATTAGCA-TTTTCCC-ATGTTTACTGGATGGAGTAAAATTGACAGC-AGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGAT-CAAGCAATAATCTCCTTGTCTGCATCGATGGTGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTCACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT]
[+] EMBL CF310581 [TTTTTTGCAAATCGGCAAGAATAAACGACATTAGATAAATTACACAAGTAAACACTTCTGATACATGATACAAAAAATAATAAGAATGTTGAGAACGCAAGCTACTCTAGAAATGACTGCTGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATCATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGCAAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAATGGCCA CCATTTCATTTGATCTTTCAACGTCATTTGTTAGACCATCCATGTGTTTATACAGCTCATTGAACTGATTCCTGAGTTCATTGTTCCGAGTCTTCAAAACTGCAATTTTCATTCCAAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCC TCTTGCAA TGTTCTACACTTGG CCATTAGCA TTTTCCC ATGTTTACTGGATGGAGTAAAATTGACAG ]
[-] EMBL C29096 [ CTACTCTAGAAATGACTGCTGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATCATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGCAAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAATGGCCANCCATTTCATTTGATCTTTCAACG ]
[-] EMBL CF310580 [ CATTCCAAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCC TCTTGCAA TGTTCTACACTTGG CCATTAGCA TTTTCCC ATGTTTACTGGATGGAGTAAAATTGACAGC AGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGAT CAAGCAATAATCTCCTTGTCTGCATCGATGGTGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTCACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT]
[-] EMBL BP184616 [ tnTTCATTTTCCTTCTTGCAATTGTTCTACATTTGGCCCATAAGCATTTTTCCCAATGTTTACTGNATGAAGTAAAATTGACAGCAAGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGATCCAAGCAATAATCTCCTTGTCTGCATCGATGGTGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTCACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT]
[-] EMBL AA751113 [ caagTCTACAC TGG CCTATAGCA TTTCCC ATGTTTACTGGATGGAGTAAAA TGACAGC AGCAACATTGTCCTGTAGTTCC TGATCTTTTTCTCC TCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGAT CAAGCAATAATCTCCTTGTCTG ]
consensusID : consensus_9288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence
[TTTTCGTTGTTCTCTNNNCTTCNCNTTTNTTTCTTGANNGTTAAGAGACATAGAAGATATGTGGTAGGGGGTAAATACGACAAATGTCGGTGTCCTAGTTTTTTTCTTCTCCTCAACAAGTTTTTATTGGGTAATCCTCGGGATTGTGGATAAGCAATATTTCTTGTTTGAATNGATGGGGCCTTAATGGAGTTTCAAATCCCTAATGCAAACTTAAGTTCTGCATTTCTGTTAAGGTTTGCAAATGTTACAAGAAAGGTGCCTCTTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT]
[-] EMBL CA753350 [TTTTCGTTGTTCTCTNNNCTTCNCNTTTNTTTCTTGANNGTTAAGAGACATAGAAGATATGTGGTAGGGGGTAAATACGACAAATGTCGGTGTCCTAGTTTTTTTCTTCTCCTCAACAAGTTTTTATTGGGTAATCCTCGGGATTGTGGATAAGCAATATTTCTTGTTTGAATNGATGGGGCCTTAATGGAGTTTCAAATCCCTAATGCAAACTTAAGTTCTGCATTTCTGTTAAGGTTTGCAAATGTTACAAGAAAGGTGCCTCTTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9288#0 TTTTTTGCAAATCGGCAAGAATAAACGACATTAGATAAATTACACAAGTAAACACTTCTG 60
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 ATACATGATACAAAAAATAATAAGAATGTTGAGAACGCAAGCTACTCTAGAAATGACTGC 120
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 TGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATC 180
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 ATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGC 240
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 AAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAAT 300
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 GGCCACCATTTCATTTGATCTTTCAACGTCATTTGTTAGACCATCCATGTGTTTATACAG 360
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 CTCATTGAACTGATTCCTGAGTTCATTGTTCCGAGTCTTCAAAACTGCAATTTTCATTCC 420
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 AAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCCTCTTGCAA 480
consensus_9288#1 -------------------------------------TTTTCGTTGTTCTCTNNNCTTCN 23
* ** * ** **
consensus_9288#0 TGTTCTACACTTGGCCATTAGCATTTTCCCATGTTTACTGGATGGAGTAAAATTGACAGC 540
consensus_9288#1 CNTTTNTTTCTTGANNGTTAAGAGACATAGAAGATATGTGGTAGGGGGTAAAT--ACGAC 81
** **** *** * * * * *** ** * **** ** *
consensus_9288#0 AGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAA 600
consensus_9288#1 A-----AATGTC----GGTGTCCTAGTTTTTTT---CTTCTCCTCAACAAG---TTTTTA 126
* * **** ** * * * ***** ********* ***** *** *
consensus_9288#0 TCGTGTAAATTCCTCGTGGATTGCTGGATCAAGCAATAATCTCCTTGTCTGCATCGATGG 660
consensus_9288#1 TTGGGTAA--TCCTCG-GGATTG-TGGAT-AAGCAATA--TTTCTTGTTTGAATNGATGG 179
* * **** ****** ****** ***** ******** * ***** ** ** *****
consensus_9288#0 TGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTC 720
consensus_9288#1 -GGCCTTAATGGAGTTT-CAAATCCCTAA-TGCAAACTTAAGTTCTGCA--TTTCTGTTA 234
********* ****** *********** **** **** ********* ** ****
consensus_9288#0 ACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTC 780
consensus_9288#1 AGGTTT-GCAAATGTTACAA-GAAAGGTGCCTCT-TTTTCTTAGCTTTCTCCAGCTGCTC 291
* **** ************* ***** ****** *************************
consensus_9288#0 CTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATC 840
consensus_9288#1 CTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATC 351
************************************************************
consensus_9288#0 TGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAAC 900
consensus_9288#1 TGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAAC 411
************************************************************
consensus_9288#0 TTCTGATTTGGCAGCCTCCCGTTCCACCT 929
consensus_9288#1 TTCTGATTTGGCAGCCTCCCGTTCCACCT 440
*****************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||