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Oryza sativa
cluster # 929 cluster # 929       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_929#0 length = 685 sequences # 1  
consensus_929#1 length = 625 sequences # 1  

consensusID : consensus_929#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence
                              [TTTTTTTTTTTTTTTTATCGGCGTTTCTTTCGTGGTCCGCGCGGATGGTGCGGTTTGTTTTGAGCCGGATGACAGGTGGGTCCCAGGCGACTGTGGATCCAAAGGATAGATTCTTTTGGACTGTAGTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTACAACCAGGTTCAACTTCTTCTCCACTCGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGCCGGCGGCAAACGCCGGCTCTAATGGGGACGAGGTCAAAAGATAAAATGTAGAGCAAGACATTGAGATTCCATTCCTCAACTTTTCCCCCGCCAATGGTGACTGGACCGACCCAGGCGGCGGCTGCAATCGGAAGCGCTCGGGACGCCATGCATGCACCCGTGCGTCACGGCGGTAAACGGCTCGTTCGGTTGAATGGAAATCGATGACGGAGGCGCTAGATCGGAGTTGGAGAAGACGGTGGTCGATCTCCCTCCTCGCTGCACGGTTCTGAGGGATTCTTGGGGTGTTTTGGAGAGGATGGGNGAGGCNNAANCTGGTGGCGCANCANCTCAGCCGGATTCGCCTCGAGGCGACGGGAACAGCGGCGCGAACCCGCGGCTGCGTGTTGACCACNGTGTGGCCGCGCTCCAGAGCCCCCTTGTCTCGTCCTCTGGCCACCTAATCAAGCT]

[+] EMBL CA759199             [TTTTTTTTTTTTTTTTATCGGCGTTTCTTTCGTGGTCCGCGCGGATGGTGCGGTTTGTTTTGAGCCGGATGACAGGTGGGTCCCAGGCGACTGTGGATCCAAAGGATAGATTCTTTTGGACTGTAGTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTACAACCAGGTTCAACTTCTTCTCCACTCGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGCCGGCGGCAAACGCCGGCTCTAATGGGGACGAGGTCAAAAGATAAAATGTAGAGCAAGACATTGAGATTCCATTCCTCAACTTTTCCCCCGCCAATGGTGACTGGACCGACCCAGGCGGCGGCTGCAATCGGAAGCGCTCGGGACGCCATGCATGCACCCGTGCGTCACGGCGGTAAACGGCTCGTTCGGTTGAATGGAAATCGATGACGGAGGCGCTAGATCGGAGTTGGAGAAGACGGTGGTCGATCTCCCTCCTCGCTGCACGGTTCTGAGGGATTCTTGGGGTGTTTTGGAGAGGATGGGNGAGGCNNAANCTGGTGGCGCANCANCTCAGCCGGATTCGCCTCGAGGCGACGGGAACAGCGGCGCGAACCCGCGGCTGCGTGTTGACCACNGTGTGGCCGCGCTCCAGAGCCCCCTTGTCTCGTCCTCTGGCCACCTAATCAAGCT]


>consensus_929#0 TTTTTTTTTTTTTTTTATCGGCGTTTCTTTCGTGGTCCGCGCGGATGGTGCGGTTTGTTT TGAGCCGGATGACAGGTGGGTCCCAGGCGACTGTGGATCCAAAGGATAGATTCTTTTGGA CTGTAGTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTACAACCAGGTTCAACTTCTT CTCCACTCGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGCCGGCG GCAAACGCCGGCTCTAATGGGGACGAGGTCAAAAGATAAAATGTAGAGCAAGACATTGAG ATTCCATTCCTCAACTTTTCCCCCGCCAATGGTGACTGGACCGACCCAGGCGGCGGCTGC AATCGGAAGCGCTCGGGACGCCATGCATGCACCCGTGCGTCACGGCGGTAAACGGCTCGT TCGGTTGAATGGAAATCGATGACGGAGGCGCTAGATCGGAGTTGGAGAAGACGGTGGTCG ATCTCCCTCCTCGCTGCACGGTTCTGAGGGATTCTTGGGGTGTTTTGGAGAGGATGGGNG AGGCNNAANCTGGTGGCGCANCANCTCAGCCGGATTCGCCTCGAGGCGACGGGAACAGCG GCGCGAACCCGCGGCTGCGTGTTGACCACNGTGTGGCCGCGCTCCAGAGCCCCCTTGTCT CGTCCTCTGGCCACCTAATCAAGCT



consensusID : consensus_929#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [ATACCATATTTATAGGGTAACCAAAAGTGGTTTCATAATTTTAGGATATAGCATAAAGTTCCTAGAGATTATACAACTCCTATGTGCAAAAATAAGTGTATTTTATGAAACTCACAATTTTAGTGACTTTTTCAGTACCGCAGTTGTAATGTTTTAATTTACAAACATAAAGACTACAAATTTATGAACACATAGAAATTTGGTTCACTCGTAAATGAGTAAAGATGAATTAGTTATGGATTTTTGAAGTTTTCCTAGTTCTCATATATGTTTTCGATTATTCTTTTGGACTGTACTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTTCAACCAGGTCCAGCTTTTCTCCACAAGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGATCTCAAGCTCGCCGGCGGCAAACGGCGGCTCTAATGGGGGCGAGGTCAAAAGATAAAATGTAGAGCAAAACATTGCGATTCCATTCCTCAACTTTTCCCCAGCCAATGGTGACTGCACCGACGCAGGCAGCAGCTGCAATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGGTGGACGGCTCGATCTATTGCATGCATGTCAAGAACATCA]

[-] EMBL CB680521             [ATACCATATTTATAGGGTAACCAAAAGTGGTTTCATAATTTTAGGATATAGCATAAAGTTCCTAGAGATTATACAACTCCTATGTGCAAAAATAAGTGTATTTTATGAAACTCACAATTTTAGTGACTTTTTCAGTACCGCAGTTGTAATGTTTTAATTTACAAACATAAAGACTACAAATTTATGAACACATAGAAATTTGGTTCACTCGTAAATGAGTAAAGATGAATTAGTTATGGATTTTTGAAGTTTTCCTAGTTCTCATATATGTTTTCGATTATTCTTTTGGACTGTACTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTTCAACCAGGTCCAGCTTTTCTCCACAAGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGATCTCAAGCTCGCCGGCGGCAAACGGCGGCTCTAATGGGGGCGAGGTCAAAAGATAAAATGTAGAGCAAAACATTGCGATTCCATTCCTCAACTTTTCCCCAGCCAATGGTGACTGCACCGACGCAGGCAGCAGCTGCAATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGGTGGACGGCTCGATCTATTGCATGCATGTCAAGAACATCA]


>consensus_929#1 ATACCATATTTATAGGGTAACCAAAAGTGGTTTCATAATTTTAGGATATAGCATAAAGTT CCTAGAGATTATACAACTCCTATGTGCAAAAATAAGTGTATTTTATGAAACTCACAATTT TAGTGACTTTTTCAGTACCGCAGTTGTAATGTTTTAATTTACAAACATAAAGACTACAAA TTTATGAACACATAGAAATTTGGTTCACTCGTAAATGAGTAAAGATGAATTAGTTATGGA TTTTTGAAGTTTTCCTAGTTCTCATATATGTTTTCGATTATTCTTTTGGACTGTACTTTT GCATGTCGAACCCTGGGATTTCTAAAACTTTCAACCAGGTCCAGCTTTTCTCCACAAGAG CAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGATCTCAAGCTCGCCGGC GGCAAACGGCGGCTCTAATGGGGGCGAGGTCAAAAGATAAAATGTAGAGCAAAACATTGC GATTCCATTCCTCAACTTTTCCCCAGCCAATGGTGACTGCACCGACGCAGGCAGCAGCTG CAATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGGTGGACGGCTCGATC TATTGCATGCATGTCAAGAACATCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_929#0      ------------------------------------------------------------
consensus_929#1      ATACCATATTTATAGGGTAACCAAAAGTGGTTTCATAATTTTAGGATATAGCATAAAGTT 60
                                                                                 

consensus_929#0      ------------------------------------------------------------
consensus_929#1      CCTAGAGATTATACAACTCCTATGTGCAAAAATAAGTGTATTTTATGAAACTCACAATTT 120
                                                                                 

consensus_929#0      -----------------------------------------------TTTTTTTTTTTTT 13
consensus_929#1      TAGTGACTTTTTCAGTACCGCAGTTGTAATGTTTTAATTTACAAACATAAAGACTACAAA 180
                                                                    *      *     

consensus_929#0      TTTATCGGCGTTTCT---TTCGTGGTCCGCGCGGATG-GTGCGGTTTGTTTTGAGCCGGA 69
consensus_929#1      TTTATGAACACATAGAAATTTGGTTCACTCGTAAATGAGTAAAGATGAATTAGTTATGGA 240
                     *****   *   *     ** *     * **   *** **   * *   ** *    ***

consensus_929#0      TGACAGGTGGGTCCCAGGCGACTGTGGATCCAAAGGATAGATTCTTTTGGACTGTAGTTT 129
consensus_929#1      TTTTTGAAGTTTTCCTAGTTCTCATATATGTTTTCGATT-ATTCTTTTGGACTGTACTTT 299
                     *    *  *  * **  *      *  **      ***  **************** ***

consensus_929#0      TGCATGTCGAACCCTGGGATTTCTAAAACTTACAACCAGGTTCAACTTCTTCTCCACTCG 189
consensus_929#1      TGCATGTCGAACCCTGGGATTTCTAAAACTTTCAACCAGGTCCAGCTT-TTCTCCACAAG 358
                     ******************************* ********* ** *** ********  *

consensus_929#0      AGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCG------------CCG 237
consensus_929#1      AGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGATCTCAAGCTCGCCG 418
                     *********************************************            ***

consensus_929#0      GCGGCAAACGCCGGCTCTAATGGGGACGAGGTCAAAAGATAAAATGTAGAGCAAGACATT 297
consensus_929#1      GCGGCAAACGGCGGCTCTAATGGGGGCGAGGTCAAAAGATAAAATGTAGAGCAAAACATT 478
                     ********** ************** **************************** *****

consensus_929#0      GAGATTCCATTCCTCAACTTTTCCCCCGCCAATGGTGACTGGACCGACCCAGGCGGCGGC 357
consensus_929#1      GCGATTCCATTCCTCAACTTTTCCCCAGCCAATGGTGACTGCACCGACGCAGGCAGCAGC 538
                     * ************************ ************** ****** ***** ** **

consensus_929#0      TGCAATCGGAAGCGCTCGGGACGCCATGCATGCACCCGTGCGTCACGGCGGTAAACGGCT 417
consensus_929#1      TGCAATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGGTGG---ACGGCT 595
                     ****** **************************  *  ******* ** **   ******

consensus_929#0      CGTTCGGTTGAATGGAAATCGATGACGGAGGCGCTAGATCGGAGTTGGAGAAGACGGTGG 477
consensus_929#1      CGATCTATTGCATGCATGTCAAGAACATCA------------------------------ 625
                     ** **  *** *** *  ** *  **                                  

consensus_929#0      TCGATCTCCCTCCTCGCTGCACGGTTCTGAGGGATTCTTGGGGTGTTTTGGAGAGGATGG 537
consensus_929#1      ------------------------------------------------------------
                                                                                 

consensus_929#0      GNGAGGCNNAANCTGGTGGCGCANCANCTCAGCCGGATTCGCCTCGAGGCGACGGGAACA 597
consensus_929#1      ------------------------------------------------------------
                                                                                 

consensus_929#0      GCGGCGCGAACCCGCGGCTGCGTGTTGACCACNGTGTGGCCGCGCTCCAGAGCCCCCTTG 657
consensus_929#1      ------------------------------------------------------------
                                                                                 

consensus_929#0      TCTCGTCCTCTGGCCACCTAATCAAGCT 685
consensus_929#1      ----------------------------
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)