These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [TTTTTTTTTTTTTTTTATCGGCGTTTCTTTCGTGGTCCGCGCGGATGGTGCGGTTTGTTTTGAGCCGGATGACAGGTGGGTCCCAGGCGACTGTGGATCCAAAGGATAGATTCTTTTGGACTGTAGTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTACAACCAGGTTCAACTTCTTCTCCACTCGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGCCGGCGGCAAACGCCGGCTCTAATGGGGACGAGGTCAAAAGATAAAATGTAGAGCAAGACATTGAGATTCCATTCCTCAACTTTTCCCCCGCCAATGGTGACTGGACCGACCCAGGCGGCGGCTGCAATCGGAAGCGCTCGGGACGCCATGCATGCACCCGTGCGTCACGGCGGTAAACGGCTCGTTCGGTTGAATGGAAATCGATGACGGAGGCGCTAGATCGGAGTTGGAGAAGACGGTGGTCGATCTCCCTCCTCGCTGCACGGTTCTGAGGGATTCTTGGGGTGTTTTGGAGAGGATGGGNGAGGCNNAANCTGGTGGCGCANCANCTCAGCCGGATTCGCCTCGAGGCGACGGGAACAGCGGCGCGAACCCGCGGCTGCGTGTTGACCACNGTGTGGCCGCGCTCCAGAGCCCCCTTGTCTCGTCCTCTGGCCACCTAATCAAGCT] [+] EMBL CA759199 [TTTTTTTTTTTTTTTTATCGGCGTTTCTTTCGTGGTCCGCGCGGATGGTGCGGTTTGTTTTGAGCCGGATGACAGGTGGGTCCCAGGCGACTGTGGATCCAAAGGATAGATTCTTTTGGACTGTAGTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTACAACCAGGTTCAACTTCTTCTCCACTCGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGCCGGCGGCAAACGCCGGCTCTAATGGGGACGAGGTCAAAAGATAAAATGTAGAGCAAGACATTGAGATTCCATTCCTCAACTTTTCCCCCGCCAATGGTGACTGGACCGACCCAGGCGGCGGCTGCAATCGGAAGCGCTCGGGACGCCATGCATGCACCCGTGCGTCACGGCGGTAAACGGCTCGTTCGGTTGAATGGAAATCGATGACGGAGGCGCTAGATCGGAGTTGGAGAAGACGGTGGTCGATCTCCCTCCTCGCTGCACGGTTCTGAGGGATTCTTGGGGTGTTTTGGAGAGGATGGGNGAGGCNNAANCTGGTGGCGCANCANCTCAGCCGGATTCGCCTCGAGGCGACGGGAACAGCGGCGCGAACCCGCGGCTGCGTGTTGACCACNGTGTGGCCGCGCTCCAGAGCCCCCTTGTCTCGTCCTCTGGCCACCTAATCAAGCT] consensusID : consensus_929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [ATACCATATTTATAGGGTAACCAAAAGTGGTTTCATAATTTTAGGATATAGCATAAAGTTCCTAGAGATTATACAACTCCTATGTGCAAAAATAAGTGTATTTTATGAAACTCACAATTTTAGTGACTTTTTCAGTACCGCAGTTGTAATGTTTTAATTTACAAACATAAAGACTACAAATTTATGAACACATAGAAATTTGGTTCACTCGTAAATGAGTAAAGATGAATTAGTTATGGATTTTTGAAGTTTTCCTAGTTCTCATATATGTTTTCGATTATTCTTTTGGACTGTACTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTTCAACCAGGTCCAGCTTTTCTCCACAAGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGATCTCAAGCTCGCCGGCGGCAAACGGCGGCTCTAATGGGGGCGAGGTCAAAAGATAAAATGTAGAGCAAAACATTGCGATTCCATTCCTCAACTTTTCCCCAGCCAATGGTGACTGCACCGACGCAGGCAGCAGCTGCAATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGGTGGACGGCTCGATCTATTGCATGCATGTCAAGAACATCA] [-] EMBL CB680521 [ATACCATATTTATAGGGTAACCAAAAGTGGTTTCATAATTTTAGGATATAGCATAAAGTTCCTAGAGATTATACAACTCCTATGTGCAAAAATAAGTGTATTTTATGAAACTCACAATTTTAGTGACTTTTTCAGTACCGCAGTTGTAATGTTTTAATTTACAAACATAAAGACTACAAATTTATGAACACATAGAAATTTGGTTCACTCGTAAATGAGTAAAGATGAATTAGTTATGGATTTTTGAAGTTTTCCTAGTTCTCATATATGTTTTCGATTATTCTTTTGGACTGTACTTTTGCATGTCGAACCCTGGGATTTCTAAAACTTTCAACCAGGTCCAGCTTTTCTCCACAAGAGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGATCTCAAGCTCGCCGGCGGCAAACGGCGGCTCTAATGGGGGCGAGGTCAAAAGATAAAATGTAGAGCAAAACATTGCGATTCCATTCCTCAACTTTTCCCCAGCCAATGGTGACTGCACCGACGCAGGCAGCAGCTGCAATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGGTGGACGGCTCGATCTATTGCATGCATGTCAAGAACATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_929#0 ------------------------------------------------------------ consensus_929#1 ATACCATATTTATAGGGTAACCAAAAGTGGTTTCATAATTTTAGGATATAGCATAAAGTT 60 consensus_929#0 ------------------------------------------------------------ consensus_929#1 CCTAGAGATTATACAACTCCTATGTGCAAAAATAAGTGTATTTTATGAAACTCACAATTT 120 consensus_929#0 -----------------------------------------------TTTTTTTTTTTTT 13 consensus_929#1 TAGTGACTTTTTCAGTACCGCAGTTGTAATGTTTTAATTTACAAACATAAAGACTACAAA 180 * * consensus_929#0 TTTATCGGCGTTTCT---TTCGTGGTCCGCGCGGATG-GTGCGGTTTGTTTTGAGCCGGA 69 consensus_929#1 TTTATGAACACATAGAAATTTGGTTCACTCGTAAATGAGTAAAGATGAATTAGTTATGGA 240 ***** * * ** * * ** *** ** * * ** * *** consensus_929#0 TGACAGGTGGGTCCCAGGCGACTGTGGATCCAAAGGATAGATTCTTTTGGACTGTAGTTT 129 consensus_929#1 TTTTTGAAGTTTTCCTAGTTCTCATATATGTTTTCGATT-ATTCTTTTGGACTGTACTTT 299 * * * * ** * * ** *** **************** *** consensus_929#0 TGCATGTCGAACCCTGGGATTTCTAAAACTTACAACCAGGTTCAACTTCTTCTCCACTCG 189 consensus_929#1 TGCATGTCGAACCCTGGGATTTCTAAAACTTTCAACCAGGTCCAGCTT-TTCTCCACAAG 358 ******************************* ********* ** *** ******** * consensus_929#0 AGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCG------------CCG 237 consensus_929#1 AGCAGGAAGCAGCGACAGCCATGGCTGAGCTCGATCTCAAGCTCGATCTCAAGCTCGCCG 418 ********************************************* *** consensus_929#0 GCGGCAAACGCCGGCTCTAATGGGGACGAGGTCAAAAGATAAAATGTAGAGCAAGACATT 297 consensus_929#1 GCGGCAAACGGCGGCTCTAATGGGGGCGAGGTCAAAAGATAAAATGTAGAGCAAAACATT 478 ********** ************** **************************** ***** consensus_929#0 GAGATTCCATTCCTCAACTTTTCCCCCGCCAATGGTGACTGGACCGACCCAGGCGGCGGC 357 consensus_929#1 GCGATTCCATTCCTCAACTTTTCCCCAGCCAATGGTGACTGCACCGACGCAGGCAGCAGC 538 * ************************ ************** ****** ***** ** ** consensus_929#0 TGCAATCGGAAGCGCTCGGGACGCCATGCATGCACCCGTGCGTCACGGCGGTAAACGGCT 417 consensus_929#1 TGCAATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGGTGG---ACGGCT 595 ****** ************************** * ******* ** ** ****** consensus_929#0 CGTTCGGTTGAATGGAAATCGATGACGGAGGCGCTAGATCGGAGTTGGAGAAGACGGTGG 477 consensus_929#1 CGATCTATTGCATGCATGTCAAGAACATCA------------------------------ 625 ** ** *** *** * ** * ** consensus_929#0 TCGATCTCCCTCCTCGCTGCACGGTTCTGAGGGATTCTTGGGGTGTTTTGGAGAGGATGG 537 consensus_929#1 ------------------------------------------------------------ consensus_929#0 GNGAGGCNNAANCTGGTGGCGCANCANCTCAGCCGGATTCGCCTCGAGGCGACGGGAACA 597 consensus_929#1 ------------------------------------------------------------ consensus_929#0 GCGGCGCGAACCCGCGGCTGCGTGTTGACCACNGTGTGGCCGCGCTCCAGAGCCCCCTTG 657 consensus_929#1 ------------------------------------------------------------ consensus_929#0 TCTCGTCCTCTGGCCACCTAATCAAGCT 685 consensus_929#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||