These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1993 fasta sequence [CCTCCAAGGTGACCACCTCCTCCCCACCGCCCCCCACATCCGGTTCCCCGAGGTTGCAGCCTCTGCAGCCTTGCGAGGATCAGATGAACCCATCGTCACCAGACGAATTCTCCAACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCAAATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATATGTGCCATAAAAGACCCATGGTTAAGCTAATGGCACAGCAGGAACGGGAGCAACTGAAGCAGAGGTGTGGTGGATCTTGGAAGCTTGTTTTCAAGTATATTGTGGCTAGAGAAAGGAATTACTCTCGGATTGTCGCCGGGCCGGGCCATAGTATTGTTGTCACCACAAAGGGAGATGCATACTCATTTGGGGCTAATTGCTGGGGCCAGCTTGGCCTTGGGGATACTGAAGATCGGTTCAAGCCATGCCTTATTAGGTCTTTGCAAAGCATCAAAATCACACAGGCTGCAGTTGGATCAAGGCAGACAATGCTTGTGAGTGACACAGGAAGTGTCTATGCATTTGGGAAGGGTAGCTTTGTGTGGGAAGAGCTTTCTGATGCAGCTGATCACATTACCACTCCTAAGATAGTGGAGTCGCTAAAGGGTGTGTTTGTAGTTCAAGCAGCCATTGGTGGTTACTTCTCTGCGTTTCTATCTAGAGAGGGTCAGGTTTACACGATCTCGTGGGGGCGAACCGAGAGGCTTGGCCATAGTTCGGATCCTTCAGATGTTGAGCCTCGTCTTCTCTCTGGACCACTTGAGGGTGTTCTTGTTGCACAGATTTCTGCTGGGAATTGCTATCTCCTTATGTTGGCCTACCAGCCAACTGGAATGTCAGTGTATTCTGTAGGCTGTGGTTTAGGAGGCAAGCTTGGTCACGGATGCAAAAACAATAAGGGCACCCCCAAGTTGATTGAACATTTCCTGACATTGAGCTTTAATCCGGTTTCAGTTGCGGCTGGCACTTGGCATGCTGCAGCTCTAGGTGACGATGGGCGTGTCTGCACCTGGGGTTGGGGCCATACTGGTTGTTTGGGACATGGCGATGAGGAGTACAGGGTTCTCCCCACTGTGGTTCAAGGATTGAGCAATGTGAAGGCTGTGCATGTCTCCACCGGTGAATACACCACCTTTGTTGTCTCCGATAACGGCGATACATACTCCTTTGGATCCGCTGAATCCCTGAATATAGGTTTCCAGGAGGATGAGGAAGCAGCAGATGATGCAGATTTTTCTACCCCAAGCTTGGTAGAATCACTGAAGGTGTTGAATGATAAGGCTGTACAGATTAGCACAACAAATTCTTCATATTGGCTCAACTCAGAAATGGGATACCCGCATACGTTCGCGCTCATGGAATCCGGTAAACTGTATGCCTTTGGGGGAGGGATCAAAGGCCAGCTTGGTGTCAAGCTCTCTGAGGGTCAAGAAAGAGCTCAGAACCCAGAGCGAGTCCCGATCGATCTCTGCTAATTTCAACCAGCATTCTGGTGACCATTTGCAATGACATATTCTGTGATCTGTGGTTAGCATGCCCTCCTGAATTTCATAGGAGGAACTCAAATGTTAGCATCGATGTAAATACTAGGGGCACTTACCTTTGGTTCTTCTCTGAAGTAACAGTGTGGTTGTTGGTAGTTCTTGCATTTTGAATTGTTGGTGCAGCCAAGTCCTGACC] [+] EMBL AK102225 [CCTCCAAGGTGACCACCTCCTCCCCACCGCCCCCCACATCCGGTTCCCCGAGGTTGCAGCCTCTGCAGCCTTGCGAGGATCAGATGAACCCATCGTCACCAGACGAATTCTCCAACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCAAATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATATGTGCCATAAAAGACCCATGGTTAAGCTAATGGCACAGCAGGAACGGGAGCAACTGAAGCAGAGGTGTGGTGGATCTTGGAAGCTTGTTTTCAAGTATATTGTGGCTAGAGAAAGGAATTACTCTCGGATTGTCGCCGGGCCGGGCCATAGTATTGTTGTCACCACAAAGGGAGATGCATACTCATTTGGGGCTAATTGCTGGGGCCAGCTTGGCCTTGGGGATACTGAAGATCGGTTCAAGCCATGCCTTATTAGGTCTTTGCAAAGCATCAAAATCACACAGGCTGCAGTTGGATCAAGGCAGACAATGCTTGTGAGTGACACAGGAAGTGTCTATGCATTTGGGAAGGGTAGCTTTGTGTGGGAAGAGCTTTCTGATGCAGCTGATCACATTACCACTCCTAAGATAGTGGAGTCGCTAAAGGGTGTGTTTGTAGTTCAAGCAGCCATTGGTGGTTACTTCTCTGCGTTTCTATCTAGAGAGGGTCAGGTTTACACGATCTCGTGGGGGCGAACCGAGAGGCTTGGCCATAGTTCGGATCCTTCAGATGTTGAGCCTCGTCTTCTCTCTGGACCACTTGAGGGTGTTCTTGTTGCACAGATTTCTGCTGGGAATTGCTATCTCCTTATGTTGGCCTACCAGCCAACTGGAATGTCAGTGTATTCTGTAGGCTGTGGTTTAGGAGGCAAGCTTGGTCACGGATGCAAAAACAATAAGGGCACCCCCAAGTTGATTGAACATTTCCTGACATTGAGCTTTAATCCGGTTTCAGTTGCGGCTGGCACTTGGCATGCTGCAGCTCTAGGTGACGATGGGCGTGTCTGCACCTGGGGTTGGGGCCATACTGGTTGTTTGGGACATGGCGATGAGGAGTACAGGGTTCTCCCCACTGTGGTTCAAGGATTGAGCAATGTGAAGGCTGTGCATGTCTCCACCGGTGAATACACCACCTTTGTTGTCTCCGATAACGGCGATACATACTCCTTTGGATCCGCTGAATCCCTGAATATAGGTTTCCAGGAGGATGAGGAAGCAGCAGATGATGCAGATTTTTCTACCCCAAGCTTGGTAGAATCACTGAAGGTGTTGAATGATAAGGCTGTACAGATTAGCACAACAAATTCTTCATATTGGCTCAACTCAGAAATGGGATACCCGCATACGTTCGCGCTCATGGAATCCGGTAAACTGTATGCCTTTGGGGGAGGGATCAAAGGCCAGCTTGGTGTCAAGCTCTCTGAGGGTCAAGAAAGAGCTCAGAACCCAGAGCGAGTCCCGATCGATCTCTGCTAATTTCAACCAGCATTCTGGTGACCATTTGCAATGACATATTCTGTGATCTGTGGTTAGCATGCCCTCCTGAATTTCATAGGAGGAACTCAAATGTTAGCATCGATGTAAATACTAGGGGCACTTACCTTTGGTTCTTCTCTGAAGTAACAGTGTGGTTGTTGGTAGTTCTTGCATTTTGAATTGTTGGTGCAGCCAAGTCCTGACC] [+] EMBL OSS4817A [ AGGTTGCAGCCTCTGCAGCCTTGCGAGGATCAGATGAACCCATCGTCACCAGACGAATTCTCCAACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTG CCAATGGACGCAGNTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCNCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGNTGCACTGGAGGCTACATG ACA TCTTCAG AANCC ] [+] EMBL CA756181 [ TCACCAGACGAATTCTCCAACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCAAATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATATGTGCCATAAAAGACCCATGGTTAAGCTAATGGCACAGCAGGAACGGGAGCAACTGAAGCAGAGGTGTGGTGGATCTTGGAAGCTTGTTTTCAAGTATATTGTGGCTAGAGAAAGGAATTACTCTCGGATTGTCGCCGGGCCGGGCCATAGTATTGTTGTCACCACAAAGGNAGATGCATACTCATTTGGGGCTta ] [+] EMBL BE230783 [ TGCTT TGAGTGACACAGGGAGTGTCTATGCATTTGGGAAGGGTAGCTTTTTGTGGGAAGAGCTTTCTGATGCAGCTGATCACATTACCACTCCTAAGATAGTGGAGTCGCTAAAGGGTGTGTTTGTAGTTCAAGCAGCCATTGGTGGTTACTTCTCTGCGTTTCTA ] [+] EMBL AA751413 [ CTGATGCAGCTGATCACATTACCACTCCTAAGATAGTGGAGTCGCTAAAGGGTGTGTTTGTAGTTCAAGCAGCCATTGGTGGTTACTTCTCTGCGTTTCTATCTAGAGAGGGTCAGGTTTACACGATCTCGTGGGGGCGAACCGAGA GCTTGG CATAGTTCGGATCCTTCAGATGTTGAGCCTCGTCTTCTCTCTGGACCA ] consensusID : consensus_9290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [GCTTAGAAATACTGAACTGCCAACATGATCGAATAATTCAATGCTTCCTTTAATTTAACCTCCATTGCAAATGATTTGCTTATTAGTGATGCCGGGGTTTGCACTATAATGTGAAGTAGTAGTAATTTGCCTCTCTTCTTTTATTCTTGTCAGACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCAAATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATAT] [+] EMBL CB640727 [GCTTAGAAATACTGAACTGCCAACATGATCGAATAATTCAATGCTTCCTTTAATTTAACCTCCATTGCAAATGATTTGCTTATTAGTGATGCCGGGGTTTGCACTATAATGTGAAGTAGTAGTAATTTGCCTCTCTTCTTTTATTCTTGTCAGACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCAAATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9290#0 ----------------------------CCTCCAAGGTGACCACCTCCTCCCCACCGCCC 32 consensus_9290#1 GCTTAGAAATACTGAACTGCCAACATGATCGAATAATTCAATGCTTCCTTTAATTTAACC 60 * * * * * **** ** consensus_9290#0 CCCAC--------ATCCGGTTCCCCGAGGTTGCAGCCTCTGCAGCCTTGCGAGGATCAGA 84 consensus_9290#1 TCCATTGCAAATGATTTGCTTATTAGTGATGCCGGGGTTTGCACTATAATGTGAAGTAGT 120 *** ** * ** * * * * * * **** * * * * ** consensus_9290#0 TGAACCCATCGTCACCAGACGAATTCT---CCAACTGAGTACTCTGCTCCCATAATCCTA 141 consensus_9290#1 AGTAATTTGCCTCTCTTCTTTTATTCTTGTCAGACTGAGTACTCTGCTCCCATAATCCTA 180 * * * ** * ***** * *************************** consensus_9290#0 TTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCA 201 consensus_9290#1 TTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCA 240 ************************************************************ consensus_9290#0 AGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCA 261 consensus_9290#1 AGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCA 300 ************************************************************ consensus_9290#0 TCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCA 321 consensus_9290#1 TCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCA 360 ************************************************************ consensus_9290#0 GGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAG 381 consensus_9290#1 GGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAG 420 ************************************************************ consensus_9290#0 CTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCA 441 consensus_9290#1 CTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCA 480 ************************************************************ consensus_9290#0 AATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATATGTGCCAT 501 consensus_9290#1 AATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATAT------- 533 ***************************************************** consensus_9290#0 AAAAGACCCATGGTTAAGCTAATGGCACAGCAGGAACGGGAGCAACTGAAGCAGAGGTGT 561 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GGTGGATCTTGGAAGCTTGTTTTCAAGTATATTGTGGCTAGAGAAAGGAATTACTCTCGG 621 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 ATTGTCGCCGGGCCGGGCCATAGTATTGTTGTCACCACAAAGGGAGATGCATACTCATTT 681 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GGGGCTAATTGCTGGGGCCAGCTTGGCCTTGGGGATACTGAAGATCGGTTCAAGCCATGC 741 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 CTTATTAGGTCTTTGCAAAGCATCAAAATCACACAGGCTGCAGTTGGATCAAGGCAGACA 801 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 ATGCTTGTGAGTGACACAGGAAGTGTCTATGCATTTGGGAAGGGTAGCTTTGTGTGGGAA 861 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GAGCTTTCTGATGCAGCTGATCACATTACCACTCCTAAGATAGTGGAGTCGCTAAAGGGT 921 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GTGTTTGTAGTTCAAGCAGCCATTGGTGGTTACTTCTCTGCGTTTCTATCTAGAGAGGGT 981 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 CAGGTTTACACGATCTCGTGGGGGCGAACCGAGAGGCTTGGCCATAGTTCGGATCCTTCA 1041 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GATGTTGAGCCTCGTCTTCTCTCTGGACCACTTGAGGGTGTTCTTGTTGCACAGATTTCT 1101 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GCTGGGAATTGCTATCTCCTTATGTTGGCCTACCAGCCAACTGGAATGTCAGTGTATTCT 1161 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GTAGGCTGTGGTTTAGGAGGCAAGCTTGGTCACGGATGCAAAAACAATAAGGGCACCCCC 1221 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 AAGTTGATTGAACATTTCCTGACATTGAGCTTTAATCCGGTTTCAGTTGCGGCTGGCACT 1281 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 TGGCATGCTGCAGCTCTAGGTGACGATGGGCGTGTCTGCACCTGGGGTTGGGGCCATACT 1341 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GGTTGTTTGGGACATGGCGATGAGGAGTACAGGGTTCTCCCCACTGTGGTTCAAGGATTG 1401 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 AGCAATGTGAAGGCTGTGCATGTCTCCACCGGTGAATACACCACCTTTGTTGTCTCCGAT 1461 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 AACGGCGATACATACTCCTTTGGATCCGCTGAATCCCTGAATATAGGTTTCCAGGAGGAT 1521 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GAGGAAGCAGCAGATGATGCAGATTTTTCTACCCCAAGCTTGGTAGAATCACTGAAGGTG 1581 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 TTGAATGATAAGGCTGTACAGATTAGCACAACAAATTCTTCATATTGGCTCAACTCAGAA 1641 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 ATGGGATACCCGCATACGTTCGCGCTCATGGAATCCGGTAAACTGTATGCCTTTGGGGGA 1701 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GGGATCAAAGGCCAGCTTGGTGTCAAGCTCTCTGAGGGTCAAGAAAGAGCTCAGAACCCA 1761 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GAGCGAGTCCCGATCGATCTCTGCTAATTTCAACCAGCATTCTGGTGACCATTTGCAATG 1821 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 ACATATTCTGTGATCTGTGGTTAGCATGCCCTCCTGAATTTCATAGGAGGAACTCAAATG 1881 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 TTAGCATCGATGTAAATACTAGGGGCACTTACCTTTGGTTCTTCTCTGAAGTAACAGTGT 1941 consensus_9290#1 ------------------------------------------------------------ consensus_9290#0 GGTTGTTGGTAGTTCTTGCATTTTGAATTGTTGGTGCAGCCAAGTCCTGACC 1993 consensus_9290#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||