These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1422 fasta sequence [AAATCTTNGACTAGTATAATTACTGTGATTTTTTAATTAATCAATGTGGTGTTGTTCTTTGCAGTGTGTTGGAGGCGCTTGATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTCTCCGCTCCGGCGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGACTACTGCTGGTTGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTCCCTCTTCTCCCATGTCGCCGGNNTTTCCNTCTCCTCCCTCGGCCTCGTGCGCGCCGACNACCTCCTCACGGTGCGGCCCCACGANGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGCCATCGCCACGGAGACCGCGGTCGCCGTCGTCGACNACNGCGGCCACCTCGTCGGCG-ANATCTCCCCCGCGCTCCTCGCGTTCTGCGACGAGACGGCGGCCGCGGCCATCGCGACGCTGTCGGTGGCCGACCTCATGGCGTACGTCGACTACTTCGGCGCGCCGCCGGAGCACATCCTTCGCGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAACGAGGCGGTGTCCTCCTTCGCGTTCTCCTCCTCCTCCACCTCGTCGTCCTCCGACGACGAGGCCCACGGCCGCGCCGCGCGGCTGAGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCCGCTGCCGCGGCGACGCC-AAGAAAGAGTTCTTTTTTTTTTTCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAGCG-TTTTGAACTCTGAACTCTGAAGTATTTGTCTCTGCCTTGGCCTGGTGCTGATGAACAAACTGAGACTTTTTGGATATGCCTTTCAAATAAAAAAAATAAAAAGATATTCTAGTTGCCCTCTCTAAACTAAAAAGGACTACACTCTTCCCTCCTCTGCGTTGGTTTGTGTTTTGGTTTTTCTTTGGGGGGGGGCCTGACCACTCTGCCTTATTTGTGGTGTTTTCGCGCCTTAGTGCTGGATGTTGCAAAAGGGAGTGGAAAATTGTGTTCACACTATCACTTTATAAAGCGCTTTTCCCATTTGATTACAGAAGTTTATTTGTCCTTGAATGTGTGCTGTTATGGTTGAATGCTGTTGCCTTTAGAACGATTGTTAGATTGGTACTTGCTTGGTCTGAGCGCTC] [+] EMBL AA751809 [AAATCTTNGACTAGTATAATTACTGTGATTTTTTAATTAATCAATGTGGTGTTGTTCTTTGCAGTGTGTTGGAGGCGCTTGATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTCTCCGCTCCGGCGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGACTACTGCTGGTTGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTCCCTCTTCTCCCATGTCGCCGGNNTTTCCNTCTCCTCCCTCGGCCTCGTGCGCGCCGACNACCTCCTCACGGTGCGGCCCCACGANGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGCCATCGCCACGGAGACCGCGGTCGCCGTCGTCGACNACNGCGGCCACCTCGTCGGCGAANATCTCCCCCGCGCTCCTCGCGTT ] [+] EMBL AK061011 [ GTTGTTCTTTGCAGTGTGTTGGAGGCGCTTGATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTCTCCGCTCCGGCGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGACTACTGCTGGTTGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTCCCTCTTCTCCCATGTCGCCGGCCGCTCCGTCTCCTCCCTCGGCCTCGTGCGCGCCGACGACCTCCTCACGGTGCGGCCCCACGAGGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGCCATCGCCACGGAGACCGCGGTCGCCGTCGTCGACGACGGCGGCCACCTCGTCGGCG AGATCTCCCCCGCGCTCCTCGCGTCCTGCGACGAGACGGCGGCCGCGGCCATCGCGACGCTGTCGGTGGCCGACCTCATGGCGTACGTCGACTACTTCGGCGCGCCGCCGGAGCACATCCTTCGCGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAACGAGGCGGTGTCCTCCTTCGCGTTCTCCTCCTCCTCCACCTCGTCGTCCTCCGACGACGAGGCCCACGGCCGCGCCGCGCGGCTGAGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCCGCTGCCGCGGCGACGCC AAGAAAGAGTTCTTTTTTTTTTTCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAGCG TTTTGAACTCTGAACTCTGAAGTATTTGTCTCTGCCTTGGCCTGGTGCTGATGAACAAACTGAGACTTTTTGGATATG ] [+] EMBL AU069917 [ CATCGCGACGCTGTCGGTGGCCGACCTCATGGCGTACGTCGACTACTTCGGCGCGCCGCCGGAGCACATCCTTCGCGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAACGAGGCGGTGTCCTCCTTCGCGTTCTCCTCCTCCTCCANCTCGTCGTCCTCCGACGACGAGGCCCACGGCCGCGCCGCGCGGCTGAGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCANCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCCGCTGCCGCGGCGACGCCAAAGAA ] [+] EMBL BE039875 [ GACGCTGTCGGTGGCCGACCTCATGGCGTACGTCGACTACTTCGGCGCGCCGCCAGAGCACATCCTTCGCGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAACGAGGCGGTGTCCTCGTTCGCGTTCTCCTCCTCCTCCACCTCGTCGTCCTCCGACGACGAGGCCCACGGCCGCGCCGCGCGGCTGAGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCCGCTGCCGCGGCGACGCC AAGAAAGAGTTCTTTTTTTTTTTCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAGCGTTTTTGAACTCTGAACTCTGAAGTATTTGGCTCTGCCTTGGCCTGGTGCTGATGAACAAACTGAGAACTTTTGGATATGCCTTTCAAATAAAAAAAATAAAAAGATATTCTAGTTGCCCTCTCTAAACTAAAAAGGACTACACTCTTCCCTCCTCTGCGTTGGTTTGTGTTTTGGTTTTTCTTTGGGGGGGGGCCTGACCACTCTGCCTTATTTGTGGTGTTTTCGCGCCTTAGTGCTGGATGTTGCAAAAGGGAGTGGAAAATTGTGTTCACACTATCACTTTATAAAGCGCTTTTCCCATTTGATTACAGAAGTTTATTTGTCCTTGAATGTGTGCTGTTATGGTTGAATGCTGTTGCCTTTAGAACGATTGTTAGATTGGTACTTGCTTGGTCTGAGCGCTC] consensusID : consensus_9293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [ATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTCTCCGCTCCGGTGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGACTACTGCTGGTTGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTCCCTCTTCTCCCATGTCGCCGGCCGCTCCGTCTCCTCCCTCGGCCTCGTGCGCGCCGACGACCTCCTCACGGTGCGGCCCCACGAGGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGCCATCGCCACGGAGACCGCGTCGCCGTCGTCGACGACGCGCCACCTCGTCGGCGAGATCTCCCCCGCGCTCCTCGCGTCCTCGACGAGCGCGCCCAAGCTTATTCCCTTATGAGGTA] [-] EMBL CB967325 [ATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTCTCCGCTCCGGTGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGACTACTGCTGGTTGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTCCCTCTTCTCCCATGTCGCCGGCCGCTCCGTCTCCTCCCTCGGCCTCGTGCGCGCCGACGACCTCCTCACGGTGCGGCCCCACGAGGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGCCATCGCCACGGAGACCGCGTCGCCGTCGTCGACGACGCGCCACCTCGTCGGCGAGATCTCCCCCGCGCTCCTCGCGTCCTCGACGAGCGCGCCCAAGCTTATTCCCTTATGAGGTA] consensusID : consensus_9293#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [CTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTNTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGNAANGGCCTGCCGCGGCGACGCCAAGAAAGAGTTCTTTTTTTTTTTTCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU089704 [CTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTNTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGNAANGGCCTGCCGCGGCGACGCCAAGAAAGAGTTCTTTTTTTTTTTTCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9293#0 AAATCTTNGACTAGTATAATTACTGTGATTTTTTAATTAATCAATGTGGTGTTGTTCTTT 60 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 GCAGTGTGTTGGAGGCGCTTGATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTC 120 consensus_9293#1 ---------------------ATGCCGTCTTGAGCGGCGCGCAGGTGCTCGCCGTCCCTC 39 consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 TCCGCTCCGGCGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCG-GCGGCGGCGGC 179 consensus_9293#1 TCCGCTCCGGTGGCCGGAGGAAGCAGCTCGGCGGCGGCGGCGGTGGCG-GCGGCGGCGGC 98 consensus_9293#2 --------------CTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTNTGCAGCC-CGGC 45 * ** ** ***** *** ** * ****** ** ** **** consensus_9293#0 GA--CTACTGCTGGT--TGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTC 235 consensus_9293#1 GA--CTACTGCTGGT--TGACGCAGGAGGACCTCGTCCGCTACTTCCTCAACTCCATCTC 154 consensus_9293#2 GAGCTCGCTGGTGGCCGTGATGATGCAGGCGCTCGCCCACCGCGCC---AGCTACCTGTG 102 ** *** *** *** * * *** **** ** * * * * ** * * * consensus_9293#0 CCTCTTCTCCCATGTCGCCGGNNTTTCCNTCTCCTCCCTCGGCCTCGTGCGCGCCGACNA 295 consensus_9293#1 CCTCTTCTCCCATGTCGCCGGCCGCTCCGTCTCCTCCCTCGGCCTCGTGCGCGCCGACGA 214 consensus_9293#2 GGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGATCG---TCACGTTCGCCGACG- 158 * ** * * * ** ** * ** ** *** ** * ******* consensus_9293#0 CCTCCTCACGGTGCGGCCCCACGANGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGC 355 consensus_9293#1 CCTCCTCACGGTGCGGCCCCACGAGGCAGCCCTGTCCGCCGTGCCCCTCCTCCGCCGCGC 274 consensus_9293#2 --TGCTCACGGT---GTTCCGCGAG-CAGCT------GCAGTGNAANGGC-CTGCCGCGG 205 * ******** * ** *** **** ** *** * * ****** consensus_9293#0 CATCGCCACGGAGACCGCGGTCGCCGTCGTCGACNACNGCGGCCACCTCGTCGGCGANAT 415 consensus_9293#1 CATCGCCACGGAGACCGCG-TCGCCGTCGTCGACGACGC--GCCACCTCGTCGGCGAGAT 331 consensus_9293#2 CGACGCCA-AGAAAGAGTTCTTTTTTTTTTTTCTGTTGC--GGCGATCGATCGATGGATC 262 * ***** ** * * * * * * * *** * consensus_9293#0 CTCCCCCGCGCTCCTCGCGTTCTGCGACGAGACGGCGGCCGCGGCCATCGCGACGCTGTC 475 consensus_9293#1 CTCCCCCGCGCTCCTCGCGTCCT-CGACGAGC--GCGCCCAAGCTTATTCCCTTATGA-- 386 consensus_9293#2 GTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAAAAAAAA 322 * * ** * * * * * * * consensus_9293#0 GGTGGCCGACCTCATGGCGTACGTCGACTACTTCGGCGCGCCGCCGGAGCACATCCTTCG 535 consensus_9293#1 GGTA-------------------------------------------------------- 390 consensus_9293#2 AAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------- 347 consensus_9293#0 CGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAA 595 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 CGAGGCGGTGTCCTCCTTCGCGTTCTCCTCCTCCTCCACCTCGTCGTCCTCCGACGACGA 655 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 GGCCCACGGCCGCGCCGCGCGGCTGAGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTC 715 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 GACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGCCGTGATGATGCAGGC 775 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 GCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGC 835 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 CGGGATCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCC 895 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 GCTGCCGCGGCGACGCCAAGAAAGAGTTCTTTTTTTTTTTCTGTTGCGGCGATCGATCGA 955 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 TGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTGGAGTGTTTGTTTTGAA 1015 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 GCGTTTTGAACTCTGAACTCTGAAGTATTTGTCTCTGCCTTGGCCTGGTGCTGATGAACA 1075 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 AACTGAGACTTTTTGGATATGCCTTTCAAATAAAAAAAATAAAAAGATATTCTAGTTGCC 1135 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 CTCTCTAAACTAAAAAGGACTACACTCTTCCCTCCTCTGCGTTGGTTTGTGTTTTGGTTT 1195 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 TTCTTTGGGGGGGGGCCTGACCACTCTGCCTTATTTGTGGTGTTTTCGCGCCTTAGTGCT 1255 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 GGATGTTGCAAAAGGGAGTGGAAAATTGTGTTCACACTATCACTTTATAAAGCGCTTTTC 1315 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 CCATTTGATTACAGAAGTTTATTTGTCCTTGAATGTGTGCTGTTATGGTTGAATGCTGTT 1375 consensus_9293#1 ------------------------------------------------------------ consensus_9293#2 ------------------------------------------------------------ consensus_9293#0 GCCTTTAGAACGATTGTTAGATTGGTACTTGCTTGGTCTGAGCGCTC 1422 consensus_9293#1 ----------------------------------------------- consensus_9293#2 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||