These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence [CATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAGATTCTTCAGAATGAAACGGTTATGTGAAAGGAAGTAGATACTGACCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGGGTATAGGTGTTGCCTGCCCAGGGAAAGTGGCCTCCCCAGCTTTTATGGCTGGACCATAGGTTCCTCTATTTCTTCGGAGGAACCTCTTGTGTGTTAATGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAGCTCCACGGCTTTCCACATCACCTCAGAGCGTTCTTCTTTCAGCCTTCGATACTCGGCGCTTTTCCTATCTAGTCCTTCCC] [+] EMBL CB676564 [CATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAGATTCTTCAGAATGAAACGGTTATGTGAAAGGAAGTAGATACTGACCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGGGTATAGGTGTTGCCTGCCCAGGGAAAGTGGCCTCCCCAGCTTTTATGGCTGGACCATAGGTTCCTCTATTTCTTCGGAGGAACCTCTTGTGTGTTAATGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAGCTCCACGGCTTTCCACATCACCTCAGAGCGTTCTTCTTTCAGCCTTCGATACTCGGCGCTTTTCCTATCTAGTCCTTCCC] consensusID : consensus_9295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence [TTTTTTTTTTTTTTTTTGTTATCAAGTTCATCGTTCATCAAAACTATGGAGTGTACAGGATCATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGGGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGGNGTATAGGTGTTGCCTGCCCAGGGAAAGTGGTCTCCCCAGCTTTTATGGCTGGACCATAGGTTCCTCTATTTCTTCGGAGGAACCTCTTGTGTGTTAATGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAGCTCCACGGCTTTCCACATCACCTCAGAGCGGTCTTCTTTC] [+] EMBL CA762080 [TTTTTTTTTTTTTTTTTGTTATCAAGTTCATCGTTCATCAAAACTATGGAGTGTACAGGATCATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGGGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGGNGTATAGGTGTTGCCTGCCCAGGGAAAGTGGTCTCCCCAGCTTTTATGGCTGGACCATAGGTTCCTCTATTTCTTCGGAGGAACCTCTTGTGTGTTAATGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAGCTCCACGGCTTTCCACATCACCTCAGAGCGGTCTTCTTTC] [+] EMBL CB638917 [ GGATCATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGG GTATAGGTGTTGCCTGCCCAG ] consensusID : consensus_9295#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [TGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAGATTCTTCCAGAAATGAAACNGTTATGTTGAAAGGAAGTAGANACTGACCTGCACGTCTGCATGTCNAATCCAACAGCATCCAGAACTCTGAATGTTGTGACACGGAAANTACGTGTTTGCGANAATGCCCCCTTGCANCGACGCCGGTCCCGATGCCTGAAATCAATCCCNCACCAAATACNGGGTTTAGTTTTGCNGCCCAGGAATGGCCCCCCCTTTTNGNNGACATGTCCCCNTCTCCGAGACCNTTTTTTNGNGACNACACNCCCCCNTTNCCNNTAACTG] [+] EMBL BE229013 [TGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAGATTCTTCCAGAAATGAAACNGTTATGTTGAAAGGAAGTAGANACTGACCTGCACGTCTGCATGTCNAATCCAACAGCATCCAGAACTCTGAATGTTGTGACACGGAAANTACGTGTTTGCGANAATGCCCCCTTGCANCGACGCCGGTCCCGATGCCTGAAATCAATCCCNCACCAAATACNGGGTTTAGTTTTGCNGCCCAGGAATGGCCCCCCCTTTTNGNNGACATGTCCCCNTCTCCGAGACCNTTTTTTNGNGACNACACNCCCCCNTTNCCNNTAACTG] [+] EMBL CB638626 [ tGGGTTTTTCTTTAAAAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGGAGTATCTACTGGATGTTGTAATGTAGTCATATACTGGTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGGCAAAAGCTCCACACAGTAG ] consensusID : consensus_9295#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [CNAGTCAAGGAGGGTTGTAAAACGGCGGCCCNAGTGNAATTGTAANAAGAATTCAATTATGGGGGGNATNGGGTACCCGGCCCCCCCCCTTGGAGTTTNNNNNNNNCNNTNNNNNNNNNNNNNNNGGAACAGGATCATGCAGGTTTTTTTCTTGAAGAAAAATTTTCTGNAACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGNTCACAGAAAATAACTCAAAATTATCCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCNACCTNTGCANGNGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATNGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGANAAGTCCTCGTGCCGATNTCCGCAGNTGCTC] [-] EMBL AA751869 [CNAGTCAAGGAGGGTTGTAAAACGGCGGCCCNAGTGNAATTGTAANAAGAATTCAATTATGGGGGGNATNGGGTACCCGGCCCCCCCCCTTGGAGTTTNNNNNNNNCNNTNNNNNNNNNNNNNNNGGAACAGGATCATGCAGGTTTTTTTCTTGAAGAAAAATTTTCTGNAACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGNTCACAGAAAATAACTCAAAATTATCCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCNACCTNTGCANGNGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATNGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGANAAGTCCTCGTGCCGATNTCCGCAGNTGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9295#0 ------------------------------------------------------------ consensus_9295#2 ------------------------------------------------------------ consensus_9295#1 ------------------------------------------------------------ consensus_9295#3 CNAGTCAAGGAGGGTTGTAAAACGGCGGCCCNAGTGNAATTGTAANAAGAATTCAATTAT 60 consensus_9295#0 ------------------------------------------------------------ consensus_9295#2 ------------------------------------------------------------ consensus_9295#1 --------------TTTTTTTTTTTTTTTTTGTTATCAAGTTCATCGTTCATCAAAACTA 46 consensus_9295#3 GGGGGGNATNGGGTACCCGGCCCCCCCCCTTGGAGTTTNNNNNNNNCNNTNNNNNNNNNN 120 consensus_9295#0 ---------------CATGCAGGTTTTTTCTTTAAGAAAAA--CTTCTGTA-CATAACCG 42 consensus_9295#2 -----------------TGCAGGTTTTTTCTTTAAGAAAAA--CTTCTGTA-CATAACCG 40 consensus_9295#1 TGGAGTGTACAGGATCATGCAGGTTTTTTCTTTAAGAAAAA--CTTCTGTA-CATAACCG 103 consensus_9295#3 NNNNNGGAACAGGATCATGCAGGTTTTTTTCTTGAAGAAAAATTTTCTGNAACATAACCG 180 ************ ** * **** ***** * ******** consensus_9295#0 TGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATC 102 consensus_9295#2 TGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATC 100 consensus_9295#1 GGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATC 163 consensus_9295#3 TGGTTCTCATGTACTAGTTGTAAACGACAATCGGNTCACAGAAAATAACTCAAAATTATC 240 ********************************* ************************* consensus_9295#0 C-AATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATG 161 consensus_9295#2 C-AATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATG 159 consensus_9295#1 C-AATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATG 222 consensus_9295#3 CCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATG 300 * ********************************************************** consensus_9295#0 TAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAAC 221 consensus_9295#2 TAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAAC 219 consensus_9295#1 TAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAAC 282 consensus_9295#3 TAGTCATATACTGTTATCCACAGATCTGCCTGCCNACCTNTGCANGNGGGGAGGATGAAC 360 ********************************** **** **** * ************* consensus_9295#0 TTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTAT 281 consensus_9295#2 TTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTAT 279 consensus_9295#1 TTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTAT 342 consensus_9295#3 TTAGCTTTTAATCTTCATAGATTAATATNGATCTCTGTCAAAAGCTCCACACAGTAGTAT 420 **************************** ******************************* consensus_9295#0 TCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAG 341 consensus_9295#2 TCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAG 339 consensus_9295#1 TC---------------------------------------------------------- 344 consensus_9295#3 TC---------------------------------------------------------- 422 ** consensus_9295#0 ATTCTTC--AGAATGAAACGGTTATGT-GAAAGGAAGTAGATACTGACCTGCACGTCTGC 398 consensus_9295#2 ATTCTTCCAGAAATGAAACNGTTATGTTGAAAGGAAGTAGANACTGACCTGCACGTCTGC 399 consensus_9295#1 -------------------------------------------------TGCACGTCTGC 355 consensus_9295#3 -------------------------------------------------TGCACGTCTGC 433 *********** consensus_9295#0 ATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTT 458 consensus_9295#2 ATGTCNAAT-CCAACAGCATCCAGAA-CTCTGAATGTTGTGACACGGAAANTA-CGTGTT 456 consensus_9295#1 ATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTT 415 consensus_9295#3 ATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTT 493 ***** *** *********** **** ********************* * ** ****** consensus_9295#0 TGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTC 518 consensus_9295#2 TGCGANAAT-GC-CCCCTTGCANCGACG-CCGGTCC--CGATGCCTGAAA---TCAATCC 508 consensus_9295#1 TGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTC 475 consensus_9295#3 TGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAN-----AAGTC 548 ***** *** ** ** ****** ***** ***** * ********* * * * consensus_9295#0 ACCACAGCAGAATAGCTGGGG-TATAGGTGTTGCCTGCCCAGGGAAAGTGGCCTCCCCAG 577 consensus_9295#2 CNCAC---CAAATA--CNGGG-TTTAG-TTTTGCN-GCCCAGGAA---TGGCCCCCCC-- 555 consensus_9295#1 ACCACAGCAGAATAGCTGGGNGTATAGGTGTTGCCTGCCCAGGGAAAGTGGTCTCCCCAG 535 consensus_9295#3 CTCGTGCCGATNTCCGCAGNTGCTC----------------------------------- 573 * * * consensus_9295#0 CTTTTATGGCTGGACCATAGGTTCCTCTA--TTTCTTCGGAGGAACCTCTTGTGTGTTAA 635 consensus_9295#2 TTTTNGNNGACATGTCCCCNTCTCCGAGACCNTTTTTTNGNGACNACACNCCCCCNTTNC 615 consensus_9295#1 CTTTTATGGCTGGACCATAGGTTCCTCTA--TTTCTTCGGAGGAACCTCTTGTGTGTTAA 593 consensus_9295#3 ------------------------------------------------------------ consensus_9295#0 TGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAG 695 consensus_9295#2 CNNTAACTG--------------------------------------------------- 624 consensus_9295#1 TGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAG 653 consensus_9295#3 ------------------------------------------------------------ consensus_9295#0 CTCCACGGCTTTCCACATCACCTCAGAGCGTTCTTCTTTCAGCCTTCGATACTCGGCGCT 755 consensus_9295#2 ------------------------------------------------------------ consensus_9295#1 CTCCACGGCTTTCCACATCACCTCAGAGCGGTCTTCTTTC-------------------- 693 consensus_9295#3 ------------------------------------------------------------ consensus_9295#0 TTTCCTATCTAGTCCTTCCC 775 consensus_9295#2 -------------------- consensus_9295#1 -------------------- consensus_9295#3 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||