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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence
[CATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAGATTCTTCAGAATGAAACGGTTATGTGAAAGGAAGTAGATACTGACCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGGGTATAGGTGTTGCCTGCCCAGGGAAAGTGGCCTCCCCAGCTTTTATGGCTGGACCATAGGTTCCTCTATTTCTTCGGAGGAACCTCTTGTGTGTTAATGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAGCTCCACGGCTTTCCACATCACCTCAGAGCGTTCTTCTTTCAGCCTTCGATACTCGGCGCTTTTCCTATCTAGTCCTTCCC]
[+] EMBL CB676564 [CATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAGATTCTTCAGAATGAAACGGTTATGTGAAAGGAAGTAGATACTGACCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGGGTATAGGTGTTGCCTGCCCAGGGAAAGTGGCCTCCCCAGCTTTTATGGCTGGACCATAGGTTCCTCTATTTCTTCGGAGGAACCTCTTGTGTGTTAATGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAGCTCCACGGCTTTCCACATCACCTCAGAGCGTTCTTCTTTCAGCCTTCGATACTCGGCGCTTTTCCTATCTAGTCCTTCCC]
consensusID : consensus_9295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence
[TTTTTTTTTTTTTTTTTGTTATCAAGTTCATCGTTCATCAAAACTATGGAGTGTACAGGATCATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGGGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGGNGTATAGGTGTTGCCTGCCCAGGGAAAGTGGTCTCCCCAGCTTTTATGGCTGGACCATAGGTTCCTCTATTTCTTCGGAGGAACCTCTTGTGTGTTAATGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAGCTCCACGGCTTTCCACATCACCTCAGAGCGGTCTTCTTTC]
[+] EMBL CA762080 [TTTTTTTTTTTTTTTTTGTTATCAAGTTCATCGTTCATCAAAACTATGGAGTGTACAGGATCATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGGGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGGNGTATAGGTGTTGCCTGCCCAGGGAAAGTGGTCTCCCCAGCTTTTATGGCTGGACCATAGGTTCCTCTATTTCTTCGGAGGAACCTCTTGTGTGTTAATGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAGCTCCACGGCTTTCCACATCACCTCAGAGCGGTCTTCTTTC]
[+] EMBL CB638917 [ GGATCATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGG GTATAGGTGTTGCCTGCCCAG ]
consensusID : consensus_9295#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence
[TGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAGATTCTTCCAGAAATGAAACNGTTATGTTGAAAGGAAGTAGANACTGACCTGCACGTCTGCATGTCNAATCCAACAGCATCCAGAACTCTGAATGTTGTGACACGGAAANTACGTGTTTGCGANAATGCCCCCTTGCANCGACGCCGGTCCCGATGCCTGAAATCAATCCCNCACCAAATACNGGGTTTAGTTTTGCNGCCCAGGAATGGCCCCCCCTTTTNGNNGACATGTCCCCNTCTCCGAGACCNTTTTTTNGNGACNACACNCCCCCNTTNCCNNTAACTG]
[+] EMBL BE229013 [TGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAGATTCTTCCAGAAATGAAACNGTTATGTTGAAAGGAAGTAGANACTGACCTGCACGTCTGCATGTCNAATCCAACAGCATCCAGAACTCTGAATGTTGTGACACGGAAANTACGTGTTTGCGANAATGCCCCCTTGCANCGACGCCGGTCCCGATGCCTGAAATCAATCCCNCACCAAATACNGGGTTTAGTTTTGCNGCCCAGGAATGGCCCCCCCTTTTNGNNGACATGTCCCCNTCTCCGAGACCNTTTTTTNGNGACNACACNCCCCCNTTNCCNNTAACTG]
[+] EMBL CB638626 [ tGGGTTTTTCTTTAAAAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGGAGTATCTACTGGATGTTGTAATGTAGTCATATACTGGTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGGCAAAAGCTCCACACAGTAG ]
consensusID : consensus_9295#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[CNAGTCAAGGAGGGTTGTAAAACGGCGGCCCNAGTGNAATTGTAANAAGAATTCAATTATGGGGGGNATNGGGTACCCGGCCCCCCCCCTTGGAGTTTNNNNNNNNCNNTNNNNNNNNNNNNNNNGGAACAGGATCATGCAGGTTTTTTTCTTGAAGAAAAATTTTCTGNAACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGNTCACAGAAAATAACTCAAAATTATCCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCNACCTNTGCANGNGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATNGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGANAAGTCCTCGTGCCGATNTCCGCAGNTGCTC]
[-] EMBL AA751869 [CNAGTCAAGGAGGGTTGTAAAACGGCGGCCCNAGTGNAATTGTAANAAGAATTCAATTATGGGGGGNATNGGGTACCCGGCCCCCCCCCTTGGAGTTTNNNNNNNNCNNTNNNNNNNNNNNNNNNGGAACAGGATCATGCAGGTTTTTTTCTTGAAGAAAAATTTTCTGNAACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGNTCACAGAAAATAACTCAAAATTATCCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCNACCTNTGCANGNGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATNGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGANAAGTCCTCGTGCCGATNTCCGCAGNTGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9295#0 ------------------------------------------------------------
consensus_9295#2 ------------------------------------------------------------
consensus_9295#1 ------------------------------------------------------------
consensus_9295#3 CNAGTCAAGGAGGGTTGTAAAACGGCGGCCCNAGTGNAATTGTAANAAGAATTCAATTAT 60
consensus_9295#0 ------------------------------------------------------------
consensus_9295#2 ------------------------------------------------------------
consensus_9295#1 --------------TTTTTTTTTTTTTTTTTGTTATCAAGTTCATCGTTCATCAAAACTA 46
consensus_9295#3 GGGGGGNATNGGGTACCCGGCCCCCCCCCTTGGAGTTTNNNNNNNNCNNTNNNNNNNNNN 120
consensus_9295#0 ---------------CATGCAGGTTTTTTCTTTAAGAAAAA--CTTCTGTA-CATAACCG 42
consensus_9295#2 -----------------TGCAGGTTTTTTCTTTAAGAAAAA--CTTCTGTA-CATAACCG 40
consensus_9295#1 TGGAGTGTACAGGATCATGCAGGTTTTTTCTTTAAGAAAAA--CTTCTGTA-CATAACCG 103
consensus_9295#3 NNNNNGGAACAGGATCATGCAGGTTTTTTTCTTGAAGAAAAATTTTCTGNAACATAACCG 180
************ ** * **** ***** * ********
consensus_9295#0 TGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATC 102
consensus_9295#2 TGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATC 100
consensus_9295#1 GGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATC 163
consensus_9295#3 TGGTTCTCATGTACTAGTTGTAAACGACAATCGGNTCACAGAAAATAACTCAAAATTATC 240
********************************* *************************
consensus_9295#0 C-AATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATG 161
consensus_9295#2 C-AATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATG 159
consensus_9295#1 C-AATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATG 222
consensus_9295#3 CCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATG 300
* **********************************************************
consensus_9295#0 TAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAAC 221
consensus_9295#2 TAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAAC 219
consensus_9295#1 TAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAAC 282
consensus_9295#3 TAGTCATATACTGTTATCCACAGATCTGCCTGCCNACCTNTGCANGNGGGGAGGATGAAC 360
********************************** **** **** * *************
consensus_9295#0 TTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTAT 281
consensus_9295#2 TTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTAT 279
consensus_9295#1 TTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTAT 342
consensus_9295#3 TTAGCTTTTAATCTTCATAGATTAATATNGATCTCTGTCAAAAGCTCCACACAGTAGTAT 420
**************************** *******************************
consensus_9295#0 TCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAG 341
consensus_9295#2 TCTTGCAAAACAAAGTCATTTGTTCCAGTTTCAGTAGCCAAAATTTGTTCCAGTTTCCAG 339
consensus_9295#1 TC---------------------------------------------------------- 344
consensus_9295#3 TC---------------------------------------------------------- 422
**
consensus_9295#0 ATTCTTC--AGAATGAAACGGTTATGT-GAAAGGAAGTAGATACTGACCTGCACGTCTGC 398
consensus_9295#2 ATTCTTCCAGAAATGAAACNGTTATGTTGAAAGGAAGTAGANACTGACCTGCACGTCTGC 399
consensus_9295#1 -------------------------------------------------TGCACGTCTGC 355
consensus_9295#3 -------------------------------------------------TGCACGTCTGC 433
***********
consensus_9295#0 ATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTT 458
consensus_9295#2 ATGTCNAAT-CCAACAGCATCCAGAA-CTCTGAATGTTGTGACACGGAAANTA-CGTGTT 456
consensus_9295#1 ATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTT 415
consensus_9295#3 ATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTT 493
***** *** *********** **** ********************* * ** ******
consensus_9295#0 TGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTC 518
consensus_9295#2 TGCGANAAT-GC-CCCCTTGCANCGACG-CCGGTCC--CGATGCCTGAAA---TCAATCC 508
consensus_9295#1 TGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTC 475
consensus_9295#3 TGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAN-----AAGTC 548
***** *** ** ** ****** ***** ***** * ********* * * *
consensus_9295#0 ACCACAGCAGAATAGCTGGGG-TATAGGTGTTGCCTGCCCAGGGAAAGTGGCCTCCCCAG 577
consensus_9295#2 CNCAC---CAAATA--CNGGG-TTTAG-TTTTGCN-GCCCAGGAA---TGGCCCCCCC-- 555
consensus_9295#1 ACCACAGCAGAATAGCTGGGNGTATAGGTGTTGCCTGCCCAGGGAAAGTGGTCTCCCCAG 535
consensus_9295#3 CTCGTGCCGATNTCCGCAGNTGCTC----------------------------------- 573
* * *
consensus_9295#0 CTTTTATGGCTGGACCATAGGTTCCTCTA--TTTCTTCGGAGGAACCTCTTGTGTGTTAA 635
consensus_9295#2 TTTTNGNNGACATGTCCCCNTCTCCGAGACCNTTTTTTNGNGACNACACNCCCCCNTTNC 615
consensus_9295#1 CTTTTATGGCTGGACCATAGGTTCCTCTA--TTTCTTCGGAGGAACCTCTTGTGTGTTAA 593
consensus_9295#3 ------------------------------------------------------------
consensus_9295#0 TGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAG 695
consensus_9295#2 CNNTAACTG--------------------------------------------------- 624
consensus_9295#1 TGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAG 653
consensus_9295#3 ------------------------------------------------------------
consensus_9295#0 CTCCACGGCTTTCCACATCACCTCAGAGCGTTCTTCTTTCAGCCTTCGATACTCGGCGCT 755
consensus_9295#2 ------------------------------------------------------------
consensus_9295#1 CTCCACGGCTTTCCACATCACCTCAGAGCGGTCTTCTTTC-------------------- 693
consensus_9295#3 ------------------------------------------------------------
consensus_9295#0 TTTCCTATCTAGTCCTTCCC 775
consensus_9295#2 --------------------
consensus_9295#1 --------------------
consensus_9295#3 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||