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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1322 fasta sequence
[ACACCGAGTCTTTGGTCGTCTCAGTGTCCGTCTCCTTCCTCATCTCCAACTCAGGAGATCATAGAATCCGAAACGAACCGTTGCAGCAGCTGATCGTCAGGCCATGTCGAACGCCGACGTGGAGGCCGGTGGGCCGGCGGGGAGGGAGGCGACGACGGGGATCAAGCCGCCGCCGGGGAGGTACAACCCGAGCGGCAACGGGCCGAACGCGGTGGCGCCGGCGCCGCCGCCGTTCTACTACTACGACCAAGCGGCGGCGCAGGAGCGGCACCACCGGACGTGGGTGGTGCCGCTGGTGGTGATAGCCAACGTGGCCATGTTCGTGGTGGTGATGTACTACAACAACTGCCCGGCCAACGGCGGCCGCCGCGACTGCGTCGGCCGCAGCTTCCTCCGACGGCTCTCCTTCCAGCCGCTCAGGGAGAACCCCGTCCTCGGCCCCTCGGCCGCCACGCTGCGGAAGTACGGGGCGCTGGACTGGTACGGGGTGGTGCACGGCAACCAGGCGTGGCGGCTGGAGACGAGCACCTGGCTGCACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGGGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTGGTGCCACTACCTCACCTGCGTGCCGACATCCAGCTGGAAATGCGACAAATGAACAGGAGATC-AGTGACGCATTAGCATGCCATGCCTCCCACTTGTCACTGCAGGGGAGAGAATGCCACCCTGCTTAAGAGGGAACAATCGAGATACAATAGATATTGTTTCTGTTTGAGACCACACTGTAAAATTTTTACGCTATATAGAACTTCAATATTGTCCATTCTTACCTATATTCTTCTGTGAAG]
[+] EMBL AK058648 [ACACCGAGTCTTTGGTCGTCTCAGTGTCCGTCTCCTTCCTCATCTCCAACTCAGGAGATCATAGAATCCGAAACGAACCGTTGCAGCAGCTGATCGTCAGGCCATGTCGAACGCCGACGTGGAGGCCGGTGGGCCGGCGGGGAGGGAGGCGACGACGGGGATCAAGCCGCCGCCGGGGAGGTACAACCCGAGCGGCAACGGGCCGAACGCGGTGGCGCCGGCGCCGCCGCCGTTCTACTACTACGACCAAGCGGCGGCGCAGGAGCGGCACCACCGGACGTGGGTGGTGCCGCTGGTGGTGATAGCCAACGTGGCCATGTTCGTGGTGGTGATGTACTACAACAACTGCCCGGCCAACGGCGGCCGCCGCGACTGCGTCGGCCGCAGCTTCCTCCGACGGCTCTCCTTCCAGCCGCTCAGGGAGAACCCCGTCCTCGGCCCCTCGGCCGCCACGCTGCGGAAGTACGGGGCGCTGGACTGGTACGGGGTGGTGCACGGCAACCAGGCGTGGCGGCTGGAGACGAGCACCTGGCTGCACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGGGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTGGTGCCACTACCTCACCTGCGTGCCGGCATCCAGCTGGAAATGCGACAAATGAACAGGAGATC AGTGACGCATTAGCATGCCATGCCTCCCACTTGTCACTGCAGGGGAGAGAATGCCACCCTGCTTAAGAGGGAACAATCGAGATACAATAGATATTGTTTCTGTTTGAGACCACACTGTAAAATTTTTACGCTATATAGAACTTCAATATTGTCCATTCTTACCTATATTCTTCTGTGAAG]
[+] EMBL AK099082 [ TCTCCTTCCTCATCTCCAACTCAGGAGATCATAGAATCCGAAACGAACCGTTGCAGCAGCTGATCGTCAGGCCATGTCGAACGCCGACGTGGAGGCCGGTGGGCCGGCGGGGAGGGAGGCGACGACGGGGATCAAGCCGCCGCCGGGGAGGTACAACCCGAGCGGCAACGGGCCGAACGCGGTGGCGCCGGCGCCGCCGCCGTTCTACTACTACGACCAAGCGGCGGCGCAGGAGCGGCACCACCGGACGTGGGTGGTGCCGCTGGTGGTGATAGCCAACGTGGCCATGTTCGTGGTGGTGATGTACTACAACAACTGCCCGGCCAACGGCGGCCGCCGCGACTGCGTCGGCCGCAGCTTCCTCCGACGGCTCTCCTTCCAGCCACTCAGGGAGAACCCCGTCCTCGGCCCCTCGGCCGCCACGCTGCGGAAGTACGGGGCGCTGGACTGGTACGGGGTGGTGCACGGCAACCAGGCGTGGCGGCTGGAGACGAGCACCTGGCTGCACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGAGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTGGTGCCACTACCTCACCTGCGTGCCGACATCCAGCTGGAAATGCGACAAATGAACAGGAGATC AGTGACGCATTAGCATGCCATGCCTCCCACTTGTCACTGCAGGGGAGAGAATGCCACCCTGCTTAAGAGGGAACAATCGAGATACAATAGATATTGTTTCTGTTTGAGACCACACTGTAAAATTTTTACGCTATATAGAACTTC ]
[+] EMBL BE230237 [ CGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTGGTGCCACTACCTCACCTGCGTGCCGACATCCAGCTGGAAATGCGACAAATGAACAGGAGATCAAGTGACGCATTAGCATGCCATGC ]
[+] EMBL BE229901 [ CGGGAGCGTCCTCTCCGTGCTCTTGATCAGCAGAAATGGCATCACCGTTGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCG CAAGTCCAAATACAACGCGTTCCAAATCATTC ]
[+] EMBL AA751893 [ CCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTANACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCANTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCT ]
consensusID : consensus_9296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[NGCCGNGGATNNAATTTGCNNGNNNNTAGANNNNNNNNTTNNNNNNNGNNGNNGNNNNNNNAANANTGNATNNNNNNGGCGAGGAATTNGGTANGAGGCGGNAANNAGGCGTGGNGGGNGGAGACGAGCANNNGGNTGNACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGAGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTCCCAGATCATCCTCCTGACTCTCTCCGTGGCCTTGTTGATACCAGGGTTT]
[+] EMBL CA753716 [NGCCGNGGATNNAATTTGCNNGNNNNTAGANNNNNNNNTTNNNNNNNGNNGNNGNNNNNNNAANANTGNATNNNNNNGGCGAGGAATTNGGTANGAGGCGGNAANNAGGCGTGGNGGGNGGAGACGAGCANNNGGNTGNACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGAGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTCCCAGATCATCCTCCTGACTCTCTCCGTGGCCTTGTTGATACCAGGGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9296#0 ACACCGAGTCTTTGGTCGTCTCAGTGTCCGTCTCCTTCCTCATCTCCAACTCAGGAGATC 60
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 ATAGAATCCGAAACGAACCGTTGCAGCAGCTGATCGTCAGGCCATGTCGAACGCCGACGT 120
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 GGAGGCCGGTGGGCCGGCGGGGAGGGAGGCGACGACGGGGATCAAGCCGCCGCCGGGGAG 180
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 GTACAACCCGAGCGGCAACGGGCCGAACGCGGTGGCGCCGGCGCCGCCGCCGTTCTACTA 240
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 CTACGACCAAGCGGCGGCGCAGGAGCGGCACCACCGGACGTGGGTGGTGCCGCTGGTGGT 300
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 GATAGCCAACGTGGCCATGTTCGTGGTGGTGATGTACTACAACAACTGCCCGGCCAACGG 360
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 CGGCCGCCGCGACTGCGTCGGCCGCAGCTTCCTCCGACGGCTCTCCTTCCAGCCGCTCAG 420
consensus_9296#1 -------------------------------NGCCGNGGATNNAATTTGCNNGNNNNTAG 29
*** * ** * **
consensus_9296#0 GGAGAACCCCGTCCTCGGCCCCTCGGCCGCCACGCTGCGGAAGTACGGGGCGCTGGACTG 480
consensus_9296#1 ANNNNNNNNTTNNNNNNNGNNGNNGNNNNNNNAANANTGNATNNNNNNGGCGAGGAATTN 89
* * * **** * * *
consensus_9296#0 GTACGGGGTGGTGCACGGCAACCAGGCGTGGCGGCTGGAGACGAGCACCTGGCTGCACGC 540
consensus_9296#1 G------GTANGAGGCGGNAANNAGGCGTGGNGGGNGGAGACGAGCANNNGGNTGNACGC 143
* ** *** ** ******** ** *********** ** ** ****
consensus_9296#0 CGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGG 600
consensus_9296#1 CGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGA 203
***********************************************************
consensus_9296#0 GCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAG 660
consensus_9296#1 GCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAG 263
************************************************************
consensus_9296#0 CGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCT 720
consensus_9296#1 CGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCT 323
************************************************************
consensus_9296#0 CTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAA 780
consensus_9296#1 CTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAA 383
************************************************************
consensus_9296#0 CAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTAT 840
consensus_9296#1 CAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTAT 443
************************************************************
consensus_9296#0 ACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGG 900
consensus_9296#1 ACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGG 503
************************************************************
consensus_9296#0 CTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTC 960
consensus_9296#1 CTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTC 563
************************************************************
consensus_9296#0 CAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGG 1020
consensus_9296#1 CAAATACAACGCGTCCCAGATCATCCTCCTGACTCTCTCCGTGGCCTTGTTGATACCAGG 623
************** ********* ****************************** ****
consensus_9296#0 GTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTG 1080
consensus_9296#1 GTTT-------------------------------------------------------- 627
****
consensus_9296#0 GTGCCACTACCTCACCTGCGTGCCGACATCCAGCTGGAAATGCGACAAATGAACAGGAGA 1140
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 TCAGTGACGCATTAGCATGCCATGCCTCCCACTTGTCACTGCAGGGGAGAGAATGCCACC 1200
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 CTGCTTAAGAGGGAACAATCGAGATACAATAGATATTGTTTCTGTTTGAGACCACACTGT 1260
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 AAAATTTTTACGCTATATAGAACTTCAATATTGTCCATTCTTACCTATATTCTTCTGTGA 1320
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 AG 1322
consensus_9296#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||