These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1322 fasta sequence [ACACCGAGTCTTTGGTCGTCTCAGTGTCCGTCTCCTTCCTCATCTCCAACTCAGGAGATCATAGAATCCGAAACGAACCGTTGCAGCAGCTGATCGTCAGGCCATGTCGAACGCCGACGTGGAGGCCGGTGGGCCGGCGGGGAGGGAGGCGACGACGGGGATCAAGCCGCCGCCGGGGAGGTACAACCCGAGCGGCAACGGGCCGAACGCGGTGGCGCCGGCGCCGCCGCCGTTCTACTACTACGACCAAGCGGCGGCGCAGGAGCGGCACCACCGGACGTGGGTGGTGCCGCTGGTGGTGATAGCCAACGTGGCCATGTTCGTGGTGGTGATGTACTACAACAACTGCCCGGCCAACGGCGGCCGCCGCGACTGCGTCGGCCGCAGCTTCCTCCGACGGCTCTCCTTCCAGCCGCTCAGGGAGAACCCCGTCCTCGGCCCCTCGGCCGCCACGCTGCGGAAGTACGGGGCGCTGGACTGGTACGGGGTGGTGCACGGCAACCAGGCGTGGCGGCTGGAGACGAGCACCTGGCTGCACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGGGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTGGTGCCACTACCTCACCTGCGTGCCGACATCCAGCTGGAAATGCGACAAATGAACAGGAGATC-AGTGACGCATTAGCATGCCATGCCTCCCACTTGTCACTGCAGGGGAGAGAATGCCACCCTGCTTAAGAGGGAACAATCGAGATACAATAGATATTGTTTCTGTTTGAGACCACACTGTAAAATTTTTACGCTATATAGAACTTCAATATTGTCCATTCTTACCTATATTCTTCTGTGAAG] [+] EMBL AK058648 [ACACCGAGTCTTTGGTCGTCTCAGTGTCCGTCTCCTTCCTCATCTCCAACTCAGGAGATCATAGAATCCGAAACGAACCGTTGCAGCAGCTGATCGTCAGGCCATGTCGAACGCCGACGTGGAGGCCGGTGGGCCGGCGGGGAGGGAGGCGACGACGGGGATCAAGCCGCCGCCGGGGAGGTACAACCCGAGCGGCAACGGGCCGAACGCGGTGGCGCCGGCGCCGCCGCCGTTCTACTACTACGACCAAGCGGCGGCGCAGGAGCGGCACCACCGGACGTGGGTGGTGCCGCTGGTGGTGATAGCCAACGTGGCCATGTTCGTGGTGGTGATGTACTACAACAACTGCCCGGCCAACGGCGGCCGCCGCGACTGCGTCGGCCGCAGCTTCCTCCGACGGCTCTCCTTCCAGCCGCTCAGGGAGAACCCCGTCCTCGGCCCCTCGGCCGCCACGCTGCGGAAGTACGGGGCGCTGGACTGGTACGGGGTGGTGCACGGCAACCAGGCGTGGCGGCTGGAGACGAGCACCTGGCTGCACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGGGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTGGTGCCACTACCTCACCTGCGTGCCGGCATCCAGCTGGAAATGCGACAAATGAACAGGAGATC AGTGACGCATTAGCATGCCATGCCTCCCACTTGTCACTGCAGGGGAGAGAATGCCACCCTGCTTAAGAGGGAACAATCGAGATACAATAGATATTGTTTCTGTTTGAGACCACACTGTAAAATTTTTACGCTATATAGAACTTCAATATTGTCCATTCTTACCTATATTCTTCTGTGAAG] [+] EMBL AK099082 [ TCTCCTTCCTCATCTCCAACTCAGGAGATCATAGAATCCGAAACGAACCGTTGCAGCAGCTGATCGTCAGGCCATGTCGAACGCCGACGTGGAGGCCGGTGGGCCGGCGGGGAGGGAGGCGACGACGGGGATCAAGCCGCCGCCGGGGAGGTACAACCCGAGCGGCAACGGGCCGAACGCGGTGGCGCCGGCGCCGCCGCCGTTCTACTACTACGACCAAGCGGCGGCGCAGGAGCGGCACCACCGGACGTGGGTGGTGCCGCTGGTGGTGATAGCCAACGTGGCCATGTTCGTGGTGGTGATGTACTACAACAACTGCCCGGCCAACGGCGGCCGCCGCGACTGCGTCGGCCGCAGCTTCCTCCGACGGCTCTCCTTCCAGCCACTCAGGGAGAACCCCGTCCTCGGCCCCTCGGCCGCCACGCTGCGGAAGTACGGGGCGCTGGACTGGTACGGGGTGGTGCACGGCAACCAGGCGTGGCGGCTGGAGACGAGCACCTGGCTGCACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGAGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTGGTGCCACTACCTCACCTGCGTGCCGACATCCAGCTGGAAATGCGACAAATGAACAGGAGATC AGTGACGCATTAGCATGCCATGCCTCCCACTTGTCACTGCAGGGGAGAGAATGCCACCCTGCTTAAGAGGGAACAATCGAGATACAATAGATATTGTTTCTGTTTGAGACCACACTGTAAAATTTTTACGCTATATAGAACTTC ] [+] EMBL BE230237 [ CGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTGGTGCCACTACCTCACCTGCGTGCCGACATCCAGCTGGAAATGCGACAAATGAACAGGAGATCAAGTGACGCATTAGCATGCCATGC ] [+] EMBL BE229901 [ CGGGAGCGTCCTCTCCGTGCTCTTGATCAGCAGAAATGGCATCACCGTTGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCG CAAGTCCAAATACAACGCGTTCCAAATCATTC ] [+] EMBL AA751893 [ CCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTANACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCANTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCT ] consensusID : consensus_9296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [NGCCGNGGATNNAATTTGCNNGNNNNTAGANNNNNNNNTTNNNNNNNGNNGNNGNNNNNNNAANANTGNATNNNNNNGGCGAGGAATTNGGTANGAGGCGGNAANNAGGCGTGGNGGGNGGAGACGAGCANNNGGNTGNACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGAGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTCCCAGATCATCCTCCTGACTCTCTCCGTGGCCTTGTTGATACCAGGGTTT] [+] EMBL CA753716 [NGCCGNGGATNNAATTTGCNNGNNNNTAGANNNNNNNNTTNNNNNNNGNNGNNGNNNNNNNAANANTGNATNNNNNNGGCGAGGAATTNGGTANGAGGCGGNAANNAGGCGTGGNGGGNGGAGACGAGCANNNGGNTGNACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGAGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTCCCAGATCATCCTCCTGACTCTCTCCGTGGCCTTGTTGATACCAGGGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9296#0 ACACCGAGTCTTTGGTCGTCTCAGTGTCCGTCTCCTTCCTCATCTCCAACTCAGGAGATC 60 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 ATAGAATCCGAAACGAACCGTTGCAGCAGCTGATCGTCAGGCCATGTCGAACGCCGACGT 120 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 GGAGGCCGGTGGGCCGGCGGGGAGGGAGGCGACGACGGGGATCAAGCCGCCGCCGGGGAG 180 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 GTACAACCCGAGCGGCAACGGGCCGAACGCGGTGGCGCCGGCGCCGCCGCCGTTCTACTA 240 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 CTACGACCAAGCGGCGGCGCAGGAGCGGCACCACCGGACGTGGGTGGTGCCGCTGGTGGT 300 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 GATAGCCAACGTGGCCATGTTCGTGGTGGTGATGTACTACAACAACTGCCCGGCCAACGG 360 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 CGGCCGCCGCGACTGCGTCGGCCGCAGCTTCCTCCGACGGCTCTCCTTCCAGCCGCTCAG 420 consensus_9296#1 -------------------------------NGCCGNGGATNNAATTTGCNNGNNNNTAG 29 *** * ** * ** consensus_9296#0 GGAGAACCCCGTCCTCGGCCCCTCGGCCGCCACGCTGCGGAAGTACGGGGCGCTGGACTG 480 consensus_9296#1 ANNNNNNNNTTNNNNNNNGNNGNNGNNNNNNNAANANTGNATNNNNNNGGCGAGGAATTN 89 * * * **** * * * consensus_9296#0 GTACGGGGTGGTGCACGGCAACCAGGCGTGGCGGCTGGAGACGAGCACCTGGCTGCACGC 540 consensus_9296#1 G------GTANGAGGCGGNAANNAGGCGTGGNGGGNGGAGACGAGCANNNGGNTGNACGC 143 * ** *** ** ******** ** *********** ** ** **** consensus_9296#0 CGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGG 600 consensus_9296#1 CGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGA 203 *********************************************************** consensus_9296#0 GCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAG 660 consensus_9296#1 GCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAG 263 ************************************************************ consensus_9296#0 CGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCT 720 consensus_9296#1 CGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCT 323 ************************************************************ consensus_9296#0 CTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAA 780 consensus_9296#1 CTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAACTGGACCATCTACAGCAA 383 ************************************************************ consensus_9296#0 CAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTAT 840 consensus_9296#1 CAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATCAACCTGGCGCTGGGTAT 443 ************************************************************ consensus_9296#0 ACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGG 900 consensus_9296#1 ACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGG 503 ************************************************************ consensus_9296#0 CTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTC 960 consensus_9296#1 CTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTC 563 ************************************************************ consensus_9296#0 CAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGG 1020 consensus_9296#1 CAAATACAACGCGTCCCAGATCATCCTCCTGACTCTCTCCGTGGCCTTGTTGATACCAGG 623 ************** ********* ****************************** **** consensus_9296#0 GTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTG 1080 consensus_9296#1 GTTT-------------------------------------------------------- 627 **** consensus_9296#0 GTGCCACTACCTCACCTGCGTGCCGACATCCAGCTGGAAATGCGACAAATGAACAGGAGA 1140 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 TCAGTGACGCATTAGCATGCCATGCCTCCCACTTGTCACTGCAGGGGAGAGAATGCCACC 1200 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 CTGCTTAAGAGGGAACAATCGAGATACAATAGATATTGTTTCTGTTTGAGACCACACTGT 1260 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 AAAATTTTTACGCTATATAGAACTTCAATATTGTCCATTCTTACCTATATTCTTCTGTGA 1320 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 AG 1322 consensus_9296#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||