These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 992 fasta sequence [AGCTCGTGCCGAATTCGGCACGAGTTAAGATGAGCAACCTGAATCCTGAGTGGAATGAACACTTCAGATTTATAGTCAAGGATCCTGAAACACAAATCCTTGAGCTCCGCATGTTTGATTGGGAAAAGGTTAAAATGCATGATAAACTGGGTATGCAAGTAGTTCCCCTCCGCTTGCTTACTCCTTATGAGAGTAAACTGTTCACACTTGACCTTCTGAAAAGCATGGACCCAAATGATCCTCATAACAAGAAGAACAGAGGAAAGCTTGTCGTAGAGCTGACATTTGATCCCTTCAGAGATGACAGCAACAGTACCATTCTGATGTCAGATGGTGAAGGCAATGTCAGTGTAAAAAGGGACGTCCCACCTANTGGAGGGTTGCTGTTGGTTTCAGTANAAAATGCAGAAGACGTCGAGGGAAAGCGTCATACTAATCCGTATGCCGTGGTTCATTTTAGGGGAGAAAGGAAGGAAACGAAGATAATCAAGAAAACAAGAGAT-CCAAGATGGAACGAAGAGTTTCAGTTCATGGTTGATGAGGCTCCTGTGGATGATAAGATCCACATCGAAGTAGTAAGCAAACGCCGTGGGCTCCGGCTTCCCTTCCGCAA-TAAGG-AATCATTGGGGCATGTGGATATAAACCTAGTGGACGTCGTGAACAACGGACGGATCAACGAAAAATACCATCTGNTCAACTCGAGGAACGGGATGGTACACGTCGAGATGAAATGGAGCACTGTATGACAATGATTCGGTA-TCTGAAGAGTCTCANCTGTATGATTATACCTGTCGCTGTACATATACAGTCGCCATACTCCGTGTGGGCCATGTATGTTGTAACTTTAGCCCTAATCCTCTACTCTCTCGCTCTTTTCGTGATCCATTTTGGGCGCTTTTTAGCGTGCTGTAACGTCAATGATAGTGGCGTGATCACTTGCTTGTAAAGTCACGCGGCAATGCGTTCGTTGATCTCTCTTTCAAAAAAAAAAA] [+] EMBL AA752034 [AGCTCGTGCCGAATTCGGCACGAGTTAAGATGAGCAACCTGAATCCTGAGTGGAATGAACACTTCAGATTTATAGTCAAGGATCCTGAAACACAAATCCTTGAGCTCCGCATGTTTGATTGGGAAAAGGTTAAAATGCATGATAAACTGGGTATGCAAGTAGTTCCCCTCCGCTTGCTTACTCCTTATGAGAGTAAACTGTTCACACTTGACCTTCTGAAAAGCATGGACCCAAATGATCCTCATAACAAGAAGAACAGAGGAAAGCTTGTCGTAGAGCTGACATTTGATCCCTTCAGAGATGACAGCAACAGTACCATTCTGATGTCAGATGGTGAAGGCAATGTCAGTGTAAAAAGGGACGTCCCACCTANTGGAGGGTTGCTGTTGGTTTCAGTANAAAATGCAGAAGACGTCGAGGGAAAGCGTCATACTAATCCGTATGCCGTGGTTCATTTTAGGGGAGAAAGGAAGGAAACGAANATAATCNAGAAAACAAGAGAT CCNAGATGGAACGAAGAG TTCAGTTCATGGTTGATGAAGCTCCTGTGGATGATAANATCCACATCNAANTA TTAGCAAACGCCGTGGGNTCCGGCTTCCCTT ] [+] EMBL AU057096 [ GGTTAAAATGCATGATAAACTGGGTATGCAAGTAGTTCCCCTCCGCTTGCTTACTCCTTATGAGAGTAAACTGTTCACACTTGACCTTCTGAAAAGCATGGACCCAAATGATCCTCATAACAAGAAGAACAGAGGAAAGCTTGTCGTAGAGCTGACATTTGATCCCTTCAGAGATGACAGCAACAGTACCATTCTGATGTCAGATGGTGAAGGCAATGTCAGTGTAAAAAGGGACGTCCCACCTAGTGGAGGGTTGCTGTTGGTTTCAGTAGAAAATGCAGAAGACGTCGAGGGAAAGCGTCATACTAATCCGTATGCCGTGGTTCATTTTAGGGGAGAAAGGAAGGAAACGAAGATAATCAAGAAAACAAGAGAT CCAAGATGGAACGAAGAGTTTCAGTTCATGGTTGATGAGGCTCCTGTGGATGATAAGATCCACATCGAAGTAGTAAGCAAACGCCGTGGGCTCCGGCTTCCCTTCCGCAA TAAGG AATCATTGGGGCATGTGGATATAAACCTAGTGGACGTCGTGAACAACGGACGGATCAACGAAAAATACCATCTGNTCAACTCGAGGAACGGGATGGTACACGTCGAGATGAAATGGAGCACTGTATGACAATGATTCGGTA TCTGAAGAGTCTCANCTGTATGATTATACCTGTCGCTGTACATATACAGTCG ] [+] EMBL AU057097 [ CGTGGTTCATTTTAGGGGAGAAAGGAAGGAAACGAAGATAATCAAGAAAACAAGAGATCCCAAGATGGAACGAAGAGTTTCAGTTCATGGTTGATGAGGCTCCTGTGGATGATAAGATCCACATCGAAGTAGTAAGCAAACGCCGTGGGCTCCGGCTTCCCTTCCGCAATTAAGGAAATCATTGGGGCATGTGGATATAAACCTAGTGGACGTCGTGAACAACGGACGGATCAACGAAAAATACCATCTGATCAACTCGAGGAACGGGATGGTACACGTCGAGATGAAATGGAGCACTGTATGACAATGATTCGGTATTCTGAAGAGTCTCACCTGTATGATTATACCTGTCGCTGTACATATACAGTCGCCATACTCCGTGTGGGCCATGTATGTTGTAACTTTAGCCCTAATCCTCTACTCTCTCGCTCTTTTCGTGATCCATTTTGGGCGCTTTTTAGCGTGCTGTAACGTCAATGATAGTGGCGTGATCACTTGCTTGTAAAGTCACGCGGCAATGCGTTCGTTGATCTCTCTTTCAAAAAAAAAAA] consensusID : consensus_9298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [TCCCCACTCGAAGTAGTAACACAACGCCGTGGGCTCCGCTTCCCTTCCNCAATAAGGAATCATTGGGGCATGTGGATATAAACCTAGTGGACGTCGTGAACAACGGACGGATCAACGAAAAATACCATCTGATCAACTCGAGGAACGGGATGGTACACGTCGAGATGAAATGGAGCNCTGTATGACAATGATTCGGTATTTCTGAAGAGTCTCACCTGTATGATTATACCTGTCGCTGTNACATATNACACGTCGCCATACTCCGCGTGGGCCATGTAGGTTGTAACTTTAGCCCTAATCCTCTACTCTCTCGCTCTTTTCGTGGATGCCCTTTTGGGCGCTTTTTAGCGTGCTGTAACGTCNATGATAGTGGCGTGATCACTTGCTTGTAAAGTCACGCGGCAATGCGTTCGTTGATCTCTCTTTCAGTGTTTTTATCATTCTTTTTGGCTGCCTGTATGGCACCAAAAAAAAAA] [+] EMBL BM421741 [TCCCCACTCGAAGTAGTAACACAACGCCGTGGGCTCCGCTTCCCTTCCNCAATAAGGAATCATTGGGGCATGTGGATATAAACCTAGTGGACGTCGTGAACAACGGACGGATCAACGAAAAATACCATCTGATCAACTCGAGGAACGGGATGGTACACGTCGAGATGAAATGGAGCNCTGTATGACAATGATTCGGTATTTCTGAAGAGTCTCACCTGTATGATTATACCTGTCGCTGTNACATATNACACGTCGCCATACTCCGCGTGGGCCATGTAGGTTGTAACTTTAGCCCTAATCCTCTACTCTCTCGCTCTTTTCGTGGATGCCCTTTTGGGCGCTTTTTAGCGTGCTGTAACGTCNATGATAGTGGCGTGATCACTTGCTTGTAAAGTCACGCGGCAATGCGTTCGTTGATCTCTCTTTCAGTGTTTTTATCATTCTTTTTGGCTGCCTGTATGGCACCAAAAAAAAAA] consensusID : consensus_9298#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [GTGGACGTCGTGAACAACGGACGGATCAACGAAAAATACCATCTGATCAACTCGAGGAACGGGATGGTACACGTCGAGATGAAATGGAGCACTGTATGACAATGATTCGGTATTCTGAAGAGTCTCACCTGTATGATTATACCTGTCGCTGTACATATACAGTCGCCATACTCCGTGTGGGCCATGTATGTTGTAACTTTAGCCCTAATCCTCTACTCTCTCGCTCTTTTCGTGATCCATTTTGGGCGCTTTTTAGCGTGCTGTAACGTCAATGATAGTGGCGTGATCACTTGCTTGTAAAGTCACGCGGCAATGCGTTCGTTGATCTCTCTTTCAGTGTTTTTATCATTCTTTTTGGCTGCCTGTATGGCACCCATCAATGTTGTGTCGTTCGATCACGCCTGAAAGTGGCTCATTTATTGAATATATATTACTCTAAAAAAA] [+] EMBL AU181420 [GTGGACGTCGTGAACAACGGACGGATCAACGAAAAATACCATCTGATCAACTCGAGGAACGGGATGGTACACGTCGAGATGAAATGGAGCACTGTATGACAATGATTCGGTATTCTGAAGAGTCTCACCTGTATGATTATACCTGTCGCTGTACATATACAGTCGCCATACTCCGTGTGGGCCATGTATGTTGTAACTTTAGCCCTAATCCTCTACTCTCTCGCTCTTTTCGTGATCCATTTTGGGCGCTTTTTAGCGTGCTGTAACGTCAATGATAGTGGCGTGATCACTTGCTTGTAAAGTCACGCGGCAATGCGTTCGTTGATCTCTCTTTCAGTGTTTTTATCATTCTTTTTGGCTGCCTGTATGGCACCCATCAATGTTGTGTCGTTCGATCACGCCTGAAAGTGGCTCATTTATTGAATATATATTACTCTAAAAAAA] consensusID : consensus_9298#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [CANANTTACGAGCCATGAATCTTCTCAAGATGGACTTGAGTAGAAAATCTGATCCCTATGTCAAGCTCCGTTTGAGTGGTGAGAAACTGCCTTCAAAGAAGACGTCTATTAAGATGAGCAACCTGAATCCTGAGTGGAATGAACACTTCAGATTTATAGTCAAGGATCCTGAAACACAAATCCTTGAGCTCCGCATGTTTGATTGGGAAAAGGTTTAGCTTTGCTGTTAAAATGCATGATAAACTGGGTATGCAAGTAGTTCCCCTCCGCTTGCTTACTCCTTATGAGAGTAAACTGTTCACACTTGACCTTCTGNAAAGCATGGNCCCAAATGATCCTCATACCAGGAGGGCCAGGGGGAAAGCTTGTCGGTNGAGCTTGCCATTTGGTCCCCTTCAGGGGNTGGCC] [+] EMBL C26570 [CANANTTACGAGCCATGAATCTTCTCAAGATGGACTTGAGTAGAAAATCTGATCCCTATGTCAAGCTCCGTTTGAGTGGTGAGAAACTGCCTTCAAAGAAGACGTCTATTAAGATGAGCAACCTGAATCCTGAGTGGAATGAACACTTCAGATTTATAGTCAAGGATCCTGAAACACAAATCCTTGAGCTCCGCATGTTTGATTGGGAAAAGGTTTAGCTTTGCTGTTAAAATGCATGATAAACTGGGTATGCAAGTAGTTCCCCTCCGCTTGCTTACTCCTTATGAGAGTAAACTGTTCACACTTGACCTTCTGNAAAGCATGGNCCCAAATGATCCTCATACCAGGAGGGCCAGGGGGAAAGCTTGTCGGTNGAGCTTGCCATTTGGTCCCCTTCAGGGGNTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9298#1 ------------------------------------------------------------ consensus_9298#2 ------------------------------------------------------------ consensus_9298#0 AGCTCGTGCCGAATTCGGCACGAGTTAAGATGAGCAACCTGAATCCTGAGTGGAATGAAC 60 consensus_9298#3 ------------------------------------------------------------ consensus_9298#1 ------------------------------------------------------------ consensus_9298#2 ------------------------------------------------------------ consensus_9298#0 ACTTCAGATTTATAGTCAAGGATCCTGAAACACAAATCCTTGAGCTCCGCATGTTTGATT 120 consensus_9298#3 ------------------------------------------------------------ consensus_9298#1 ------------------------------------------------------------ consensus_9298#2 ------------------------------------------------------------ consensus_9298#0 GGGAAAAGGTTAAAATGCATGATAAACTGGGTATGCAAGTAGTTCCCCTCCGCTTGCTTA 180 consensus_9298#3 ------------------------------------------------------------ consensus_9298#1 ------------------------------------------------------------ consensus_9298#2 ------------------------------------------------------------ consensus_9298#0 CTCCTTATGAGAGTAAACTGTTCACACTTGACCTTCTGAAAAGCATGGACCCAAATGATC 240 consensus_9298#3 ------------------------------------------------------------ consensus_9298#1 ------------------------------------------------------------ consensus_9298#2 ------------------------------------------------------------ consensus_9298#0 CTCATAACAAGAAGAACAGAGGAAAGCTTGTCGTAGAGCTGACATTTGATCCCTTCAGAG 300 consensus_9298#3 ------------------------------------------------------------ consensus_9298#1 ------------------------------------------------------------ consensus_9298#2 ------------------------------------------------------------ consensus_9298#0 ATGACAGCAACAGTACCATTCTGATGTCAGATGGTGAAGGCAATGTCAGTGTAAAAAGGG 360 consensus_9298#3 ------------------------------------------------------------ consensus_9298#1 ------------------------------------------------------------ consensus_9298#2 ------------------------------------------------------------ consensus_9298#0 ACGTCCCACCTANTGGAGGGTTGCTGTTGGTTTCAGTANAAAATGCAGAAGACGTCGAGG 420 consensus_9298#3 ------------------------------------------------------------ consensus_9298#1 ------------------------------------------------------------ consensus_9298#2 ------------------------------------------------------------ consensus_9298#0 GAAAGCGTCATACTAATCCGTATGCCGTGGTTCATTTTAGGGGAGAAAGGAAGGAAACGA 480 consensus_9298#3 ------------------------------------------------------------ consensus_9298#1 ------------------------------------------------------------ consensus_9298#2 ------------------------------------------------------------ consensus_9298#0 AGATAATCAAGAAAACAAGAGATCCAAGATGGAACGAAGAGTTTCAGTTCATGGTTGATG 540 consensus_9298#3 ------------------------------------------------------------ consensus_9298#1 --------------------TCCCCACTCGAAGTAGTAACACAACGCCGTGGGCTCCG-C 39 consensus_9298#2 ------------------------------------------------------------ consensus_9298#0 AGGCTCCTGTGGATGATAAGATCCACATCGAAGTAGTAAGCAAACGCCGTGGGCTCCGGC 600 consensus_9298#3 ------------------------------------------------------------ consensus_9298#1 TTCCCTTCCNCAATAAGGAATCATTGGGGCATGTGGATATAAACCTAGTGGACGTCGTGA 99 consensus_9298#2 -----------------------------------------------GTGGACGTCGTGA 13 consensus_9298#0 TTCCCTTCCGCAATAAGGAATCATTGGGGCATGTGGATATAAACCTAGTGGACGTCGTGA 660 consensus_9298#3 ---------------------------------CANANTTACGAGCCATGAATCTTCTCA 27 ** * * * * consensus_9298#1 ACAACGGACGGATCAACGAAAAATA-CCATCTGATCAACTCGAGGAACGGGATGGTACAC 158 consensus_9298#2 ACAACGGACGGATCAACGAAAAATA-CCATCTGATCAACTCGAGGAACGGGATGGTACAC 72 consensus_9298#0 ACAACGGACGGATCAACGAAAAATA-CCATCTGNTCAACTCGAGGAACGGGATGGTACAC 719 consensus_9298#3 AGATGGACTTGAGTAGAAAATCTGATCCCTATGTCAAGCTCCGTTTGAGTGGTGAGAAAC 87 * * * ** * ** * ** * ** * *** * * ** * ** consensus_9298#1 GTCGAGATGAAATGGAGCNCTGTATGACAATGATTCGGTATTTCTGAAGAGTCTCACCTG 218 consensus_9298#2 GTCGAGATGAAATGGAGCACTGTATGACAATGATTCGGTATT-CTGAAGAGTCTCACCTG 131 consensus_9298#0 GTCGAGATGAAATGGAGCACTGTATGACAATGATTCGGTAT--CTGAAGAGTCTCANCTG 777 consensus_9298#3 TGCCTTCAAAGAAGACGTCTATTAAGATGAGCAACCTGAATC-CTGAGTGGAATGAACAC 146 * * * * * ** ** * * * * ** **** * * * * consensus_9298#1 TATGATTATACCTGTCGCTGTNACATATNACACGTCGCCATACTCCGCGTGGGCCATGTA 278 consensus_9298#2 TATGATTATACCTGTCGCTGTA-CATATA-CA-GTCGCCATACTCCGTGTGGGCCATGTA 188 consensus_9298#0 TATGATTATACCTGTCGCTGTA-CATATA-CA-GTCGCCATACTCCGTGTGGGCCATGTA 834 consensus_9298#3 TTCAGATTTATAGTCAAGGATCCTGAAACACAAATCCTTGAGCTCCGCATG--TTTGATT 204 * * ** * * ** ** ***** ** * consensus_9298#1 GGTTGTAACTTTAGCCCTAATCCTCTACTCTCTCGCTCTTTTCGTGGATGCCCTTTTGGG 338 consensus_9298#2 TGTTGTAACTTTAGCCCTAATCCTCTACTCTCTCGCTCTTTTCGTGA--TCCATTTTGGG 246 consensus_9298#0 TGTTGTAACTTTAGCCCTAATCCTCTACTCTCTCGCTCTTTTCGTGA--TCCATTTTGGG 892 consensus_9298#3 GGGAAAAGGTTTAGCTTTGCTGTTAAAATGCATGATAAACTGGGTAT--GCAAGT---AG 259 * * ****** * * * * * * * ** * * * consensus_9298#1 CGCTTTTTAGCGTGCTGTAACGTCNATGATAGTGGCGTGATCACTTGCTTGTAAAGTCAC 398 consensus_9298#2 CGCTTTTTAGCGTGCTGTAACGTCAATGATAGTGGCGTGATCACTTGCTTGTAAAGTCAC 306 consensus_9298#0 CGCTTTTTAGCGTGCTGTAACGTCAATGATAGTGGCGTGATCACTTGCTTGTAAAGTCAC 952 consensus_9298#3 TTCCCCTCCGCTTGCT-TACTCCTTATGAGAGTAAACTGTTCAC--ACTTGACCTTCTGN 316 * * ** **** ** **** *** ** **** **** consensus_9298#1 GCGGCAATGCGTTCGTTGATCTCTCTTTCAGTGTTTTTA---------TCATTCTTTTTG 449 consensus_9298#2 GCGGCAATGCGTTCGTTGATCTCTCTTTCAGTGTTTTTA---------TCATTCTTTTTG 357 consensus_9298#0 GCGGCAATGCGTTCGTTGATCTCTCTTTCAAAAAAAAAA---------A----------- 992 consensus_9298#3 AAAGCATGGNCCCAAATGATCCTCATACCAGGAGGGCCAGGGGGAAAGCTTGTCGGTNGA 376 *** * ***** * ** * consensus_9298#1 GCTGCCTGTATGGCACCAAAAAAAAAA--------------------------------- 476 consensus_9298#2 GCTGCCTGTATGGCACCCATCAATGTTGTGTCGTTCGATCACGCCTGAAAGTGGCTCATT 417 consensus_9298#0 ------------------------------------------------------------ consensus_9298#3 GCTTGCCATTTGGTCCCCTTCAGGGGNTGGCC---------------------------- 408 consensus_9298#1 --------------------------- consensus_9298#2 TATTGAATATATATTACTCTAAAAAAA 444 consensus_9298#0 --------------------------- consensus_9298#3 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||