cluster # 930

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Oryza sativa
cluster # 930 cluster # 930 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_930#0 length = 534 sequences # 1

consensus_930#1 length = 363 sequences # 1

consensusID : consensus_930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [CTCCTCTTCACCACACAGTTCGGATTCGAGGACAACAGCAACATCCTTGTCTTTGGGGAGACTAAACCGATCGCAGCCTTCGTAAGAGACTATTTTGGTTTCCACCGCGAGCTGCTACCACTTTCTGCCATAATATTGGCAGCATACCCTGTCCTCTTCGCCATCCTGTACGGGTACAGCATCTCAAGGTTTAACTTCCAAAAGAGATAGACAGATCAGGGGTGTAAATAGGAAAATTTGAACAGGATAATAACTGAACCACATGTCCATTACCATATAAGTTGAGCCGGATTCGAATACGAACCGGATATCTGTTGAATGTGGATATGGATACAGATTCAGATTAGATATTGGTCTGTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACAAAAATTTAATAGTCCAAGAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTGTTTGGTTACAGCAATATGAAGGCTGAACTTCCAAAAGTAAAAACACACTATCATGGCAAAG]

[+] EMBL AK107869             [CTCCTCTTCACCACACAGTTCGGATTCGAGGACAACAGCAACATCCTTGTCTTTGGGGAGACTAAACCGATCGCAGCCTTCGTAAGAGACTATTTTGGTTTCCACCGCGAGCTGCTACCACTTTCTGCCATAATATTGGCAGCATACCCTGTCCTCTTCGCCATCCTGTACGGGTACAGCATCTCAAGGTTTAACTTCCAAAAGAGATAGACAGATCAGGGGTGTAAATAGGAAAATTTGAACAGGATAATAACTGAACCACATGTCCATTACCATATAAGTTGAGCCGGATTCGAATACGAACCGGATATCTGTTGAATGTGGATATGGATACAGATTCAGATTAGATATTGGTCTGTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACAAAAATTTAATAGTCCAAGAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTGTTTGGTTACAGCAATATGAAGGCTGAACTTCCAAAAGTAAAAACACACTATCATGGCAAAG]




>consensus_930#0
CTCCTCTTCACCACACAGTTCGGATTCGAGGACAACAGCAACATCCTTGTCTTTGGGGAG
ACTAAACCGATCGCAGCCTTCGTAAGAGACTATTTTGGTTTCCACCGCGAGCTGCTACCA
CTTTCTGCCATAATATTGGCAGCATACCCTGTCCTCTTCGCCATCCTGTACGGGTACAGC
ATCTCAAGGTTTAACTTCCAAAAGAGATAGACAGATCAGGGGTGTAAATAGGAAAATTTG
AACAGGATAATAACTGAACCACATGTCCATTACCATATAAGTTGAGCCGGATTCGAATAC
GAACCGGATATCTGTTGAATGTGGATATGGATACAGATTCAGATTAGATATTGGTCTGTT
TCAATCAGATTCGGTTATCCACTAATTGCAATGATGACAAAAATTTAATAGTCCAAGAGA
CTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTGTTTGGTT
ACAGCAATATGAAGGCTGAACTTCCAAAAGTAAAAACACACTATCATGGCAAAG

consensusID : consensus_930#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [TAATATTTGGCAGCATACCCTGGTCCTCTGTGCCATCCTGTACGGGTACAGCATCTCAAGGTTTTAACGTTCCAAGAGATAGACAGATCAGGGGGTGTAAATAGGAAAATTTGAACAGGATAATAACTGAACCACATATCCCTTACCATATAAGTTGAGCCGGATTCGAATACGGACCGGATATCTGTTGAATGTGGATACGGATACAGATTCAGATTAGATATTGGTCTGTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACCAAAATTTAATAGTCCACAGAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTCTCAGTCAAAAAAAAAA]

[+] EMBL BI811696             [TAATATTTGGCAGCATACCCTGGTCCTCTGTGCCATCCTGTACGGGTACAGCATCTCAAGGTTTTAACGTTCCAAGAGATAGACAGATCAGGGGGTGTAAATAGGAAAATTTGAACAGGATAATAACTGAACCACATATCCCTTACCATATAAGTTGAGCCGGATTCGAATACGGACCGGATATCTGTTGAATGTGGATACGGATACAGATTCAGATTAGATATTGGTCTGTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACCAAAATTTAATAGTCCACAGAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTCTCAGTCAAAAAAAAAA]




>consensus_930#1
TAATATTTGGCAGCATACCCTGGTCCTCTGTGCCATCCTGTACGGGTACAGCATCTCAAG
GTTTTAACGTTCCAAGAGATAGACAGATCAGGGGGTGTAAATAGGAAAATTTGAACAGGA
TAATAACTGAACCACATATCCCTTACCATATAAGTTGAGCCGGATTCGAATACGGACCGG
ATATCTGTTGAATGTGGATACGGATACAGATTCAGATTAGATATTGGTCTGTTTCAATCA
GATTCGGTTATCCACTAATTGCAATGATGACCAAAATTTAATAGTCCACAGAGACTTATA
TACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTCTCAGTCAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_930#0      CTCCTCTTCACCACACAGTTCGGATTCGAGGACAACAGCAACATCCTTGTCTTTGGGGAG 60
consensus_930#1      ------------------------------------------------------------
                                                                                 

consensus_930#0      ACTAAACCGATCGCAGCCTTCGTAAGAGACTATTTTGGTTTCCACCGCGAGCTGCTACCA 120
consensus_930#1      ------------------------------------------------------------
                                                                                 

consensus_930#0      CTTTCTGCCATAATATT-GGCAGCATACCCTG-TCCTCTTCGCCATCCTGTACGGGTACA 178
consensus_930#1      ----------TAATATTTGGCAGCATACCCTGGTCCTCTGTGCCATCCTGTACGGGTACA 50
                               ******* ************** ******  *******************

consensus_930#0      GCATCTCAAGGTTTAACTTCCAAAAGAGATAGACAGATCAGGGG-TGTAAATAGGAAAAT 237
consensus_930#1      GCATCTCAAGGTTTTAACGTTCCAAGAGATAGACAGATCAGGGGGTGTAAATAGGAAAAT 110
                     ************** *       ********************* ***************

consensus_930#0      TTGAACAGGATAATAACTGAACCACATGTCCATTACCATATAAGTTGAGCCGGATTCGAA 297
consensus_930#1      TTGAACAGGATAATAACTGAACCACATATCCCTTACCATATAAGTTGAGCCGGATTCGAA 170
                     *************************** *** ****************************

consensus_930#0      TACGAACCGGATATCTGTTGAATGTGGATATGGATACAGATTCAGATTAGATATTGGTCT 357
consensus_930#1      TACGGACCGGATATCTGTTGAATGTGGATACGGATACAGATTCAGATTAGATATTGGTCT 230
                     **** ************************* *****************************

consensus_930#0      GTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACAAAAATTTAATAGTCCA-A 416
consensus_930#1      GTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACCAAAATTTAATAGTCCACA 290
                     ***************************************** **************** *

consensus_930#0      GAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTGTTT 476
consensus_930#1      GAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTT-CTC 349
                     ********************************************************  * 

consensus_930#0      GGTTACAGCAATATGAAGGCTGAACTTCCAAAAGTAAAAACACACTATCATGGCAAAG 534
consensus_930#1      AGTCAAAAAAAAAA-------------------------------------------- 363
                      ** * *  ** *