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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1760 fasta sequence
[CGACCTCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAGGAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTCGGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTCGCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGTATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCGGCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACGCGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAGCATCCTCGGTGAGCTCGACCACGCCCCCATTAGTATCGATTGCTGCTTAGGGGGTCGCTTTTGTTGTGACAATACACAATGTTTAATTGTGCAGCTAGAGAGAAGGCGATGGTGATCAACCTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACGATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTGTGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGAGATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTCCAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGTCTTGAAAGGCGCGCCACTCCGGTACTTGAGGAACTGACCAAGAATGTCAGCACAAGGAATCTCGATCGTGTGCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAAGGTCAGAGATGAAATAGAACATCTTCTGGATGATAATGAAGACATGGCACATCTGTATCTAACAAGGAAGCAATTACAAAACCAGCAAGTTGAGGCTTTAATATCATCGGCTGCTTCCAATAGCATTGTTCCTGGAGGAACAAGTCTGTCCAGGTTGAACAATAGTTTTCGGCGCAGCGTGAGCATCGCTACAAGCATGCATTTGGATAATGACGTGGAAGACCTAGAAATGTTGCTTGAGGCTTACTTCATGCAATTGGATGGAATTCGCAACAGAATTTTGTCGGTTCGAGAGTATATTGATGATACAGAAGACTATGTCAATATTCAACTTGACAACCA-GCGTAATGAAC-TTATTCAG-CTTCAGCT--TACACTGACTATTGCATCCTTCGGCATAGCTGTCAACACCT-TCATAGCTGGGGCTTTTGCGATGAACATCCAGAGCAAATTGTAC-AGCATTGATGATGGTAGCTTCTTTTGGCCATTTGTTGGGGGCACCTCATCGGGCTGCTTCATGATCTGCATCGTCTTATTATGGTATGCCCGGTGGAAGAAGTTGCTCGGTCCTTGAACACAATGT-AACAAGTCACGACTCATGAGAACTGTCTCGCTGTAAAGGGCATGCATTTTGACTCGTAACGTCTG-CAGAAAGGAGCAGTCATTTGAAACATAAAAGAGAATCCTAGGATTAGGGAGAAACTCTAATGCATTTATGTTTCACTGGTAAATAAGATACA-TTTCTGTAGTTTCCCCTTGGTAAAAATGTAGTATACTAACATGTTATGATCATCAGCACCCTTG]
[+] EMBL AK069472 [CGACCTCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAGGAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTCGGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTCGCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGTATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCGGCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACGCGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAGCATCCTCGGTGAGCTCGACCACGCCCCCATTAGTATCGATTGCTGCTTAGGGGGTCGCTTTTGTTGTGACAATACACAATGTTTAATTGTGCAGCTAGAGAGAAGGCGATGGTGATCAACCTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACGATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTGTGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGAGATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTCCAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGTCTTGAAAGGCGCGCCACTCCGGTACTTGAGGAACTGACCAAGAATGTCAGCACAAGGAATCTCGATCGTGTGCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAAGGTCAGAGATGAAATAGAACATCTTCTGGATGATAATGAAGACATGGCACATCTGTATCTAACAAGGAAGCAATTACAAAACCAGCAAGTTGAGGCTTTAATATCATCGGCTGCTTCCAATAGCATTGTTCCTGGAGGAACAAGTCTGTCCAGGTTGAACAATAGTTTTCGGCGCAGCGTGAGCATCGCTACAAGCATGCATTTGGATAATGACGTGGAAGACCTAGAAATGTTGCTTGAGGCTTACTTCATGCAATTGGATGGAATTCGCAACAGAATTTTGTCGGTTCGAGAGTATATTGATGATACAGAAGACTATGTCAATATTCAACTTGACAACCA GCGTAATGAAC TTATTCAG CTTCAGCT TACACTGACTATTGCATCCTTCGGCATAGCTGTCAACACCT TCATAGCTGGGGCTTTTGCGATGAACATCCAGAGCAAATTGTAC AGCATTGATGATGGTAGCTTCTTTTGGCCATTTGTTGGGGGCACCTCATCGGGCTGCTTCATGATCTGCATCGTCTTATTATGGTATGCCCGGTGGAAGAAGTTGCTCGGTCCTTGAACACAATGT AACAAGTCACGACTCATGAGAACTGTCTCGCTGTAAAGGGCATGCATTTTGACTTGTAACGTCTG CAGAAAGGAGCAGTCATTTGAAACATAAAAGAGAATCCTAGGATTAGGGAGAAACTCTAATGCATTTATGTTTCACTGGTAAATAAGATAC ]
[+] EMBL BI810973 [ acCTATGTCAATAGTCAACTTGACAACCACGCGTAAGGAACGTTATTCAGCCTTCAGCTTGTACACTGACTATGGCATCCTTCGGCATACCTGTCAACACCTGTCATA CT GGGCTTTTGCGATGAACATCCAGAGCAAATTGTACAAGCCTTGATGATGGTAGCTTCTGTTTGCCATTTTTTGGGGGCACCTCATC GGCTGCTTCATGATCTGCATCGTCTTATTATGGTATGCCCGGTGGAAGAAGTTGCTCGGTCCTTGAACACCATGTCAACAAGTCACGACTCATGAGAACTGTCTCGCTGTAAAGGGCATGCATTTTGACTCGTAACGTCTG CAGAAAGGACCAGTCATTTGAAACATAAAAGAGAATCCTAGGATTAGGGAGAAACT ]
[-] EMBL AA752379 [ gtaAAAGGGCATGCA TTTGACTCGTAACGTCTGSKAGAAAGGAGCAGTCATTTGAAACATAAAAGAGAATCCTAGGATTAGGGAGAAACWCTAATGCATTTATGTTTCACTGGTAAATAAGATACA TTTCTGTAGTTTC ]
[+] EMBL CB096689 [ GAATCCTAGGATTAGGGAGAAACTCTAATGCATTTATGTTTCACTGGTAAATAAGATACATTTTCTGTAGTTTTCCCTTGGTAAAAATGTAGTATACTAACATGTTATGATCATCAGCACCCTTG]
consensusID : consensus_9301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1169 fasta sequence
[TCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAGGAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTCGGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTCGCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGTATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCGGCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACGCGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAGCATCCTCGCTAGAGAGAAGGCGATGGTGATCAACCTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACGATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTGTGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGAGATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTCCAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGTCTTGAAAGGCGCGCCACTCCGGTNCTTGAGGAACTGACCAAGAATGTCAGCACAAGGAATCTCGATCGTGTTGCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAAGGTCAGANATGAAATANAACATCTTCTGGGATGATAATGAAAAACATGGGCACATCTGTNTCTAACCAGGGANACNATTACCAAACCCCGCNAGTTTGANGCTTTNATATCNTCCGGCTGCTTCCAATNGCNTTGTTCCTGGANGAACAAATCTGTCCAGGTTGAACAATAGTTTTCGGCGCANCGTGAGCNTCCCTNCNAGCCTGCCTTTGGATNATGACNTGGAAAACCTANAAATGTTGCTTGAAGGCTNCCTCCCGCCANTGGGNTGGATTCCNNCCCAAATTTTGGTCGGTCCAA]
[+] EMBL CB646937 [TCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAGGAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTCGGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTCGCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGTATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCGGCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACGCGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAGCATCCTCGCTAGAGAGAAGGCGATGGTGATCAACCTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACGATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTGTGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGAGATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTCCAGGTGCT ]
[+] EMBL BE229740 [ GGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTCCAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGTCTTGAAAGGCGCGCCACTCCGGTNCTTGAGGAACTGACCAAGAATGTCAGCACAAGGAATCTCGATCGTGTTGCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAAGGTCAGANATGAAATANAACATCTTCTGGGATGATAATGAAAAACATGGGCACATCTGTNTCTAACCAGGGANACNATTACCAAACCCCGCNAGTTTGANGCTTTNATATCNTCCGGCTGCTTCCAATNGCNTTGTTCCTGGANGAACAAATCTGTCCAGGTTGAACAATAGTTTTCGGCGCANCGTGAGCNTCCCTNCNAGCCTGCCTTTGGATNATGACNTGGAAAACCTANAAATGTTGCTTGAAGGCTNCCTCCCGCCANTGGGNTGGATTCCNNCCCAAATTTTGGTCGGTCCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9301#0 CGACCTCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAG 60
consensus_9301#1 -----TCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAG 55
*******************************************************
consensus_9301#0 GAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTC 120
consensus_9301#1 GAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTC 115
************************************************************
consensus_9301#0 GGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTC 180
consensus_9301#1 GGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTC 175
************************************************************
consensus_9301#0 GCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGT 240
consensus_9301#1 GCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGT 235
************************************************************
consensus_9301#0 ATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCG 300
consensus_9301#1 ATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCG 295
************************************************************
consensus_9301#0 GCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACG 360
consensus_9301#1 GCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACG 355
************************************************************
consensus_9301#0 CGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAG 420
consensus_9301#1 CGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAG 415
************************************************************
consensus_9301#0 CATCCTCGGTGAGCTCGACCACGCCCCCATTAGTATCGATTGCTGCTTAGGGGGTCGCTT 480
consensus_9301#1 CATCCTCG---------------------------------------------------- 423
********
consensus_9301#0 TTGTTGTGACAATACACAATGTTTAATTGTGCAGCTAGAGAGAAGGCGATGGTGATCAAC 540
consensus_9301#1 ----------------------------------CTAGAGAGAAGGCGATGGTGATCAAC 449
**************************
consensus_9301#0 CTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACG 600
consensus_9301#1 CTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACG 509
************************************************************
consensus_9301#0 ATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTG 660
consensus_9301#1 ATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTG 569
************************************************************
consensus_9301#0 TGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGA 720
consensus_9301#1 TGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGA 629
************************************************************
consensus_9301#0 GATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTC 780
consensus_9301#1 GATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTC 689
************************************************************
consensus_9301#0 CAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGT 840
consensus_9301#1 CAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGT 749
************************************************************
consensus_9301#0 CTTGAAAGGCGCGCCACTCCGGTACTTGAGGAACTGACCAAGAATGTCAGCACAAGGAAT 900
consensus_9301#1 CTTGAAAGGCGCGCCACTCCGGTNCTTGAGGAACTGACCAAGAATGTCAGCACAAGGAAT 809
*********************** ************************************
consensus_9301#0 CTCGATCGTGT-GCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAA 959
consensus_9301#1 CTCGATCGTGTTGCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAA 869
*********** ************************************************
consensus_9301#0 GGTCAGAGATGAAATAGAACATCTTCTGG-ATGATAATGAAGA-CATGG-CACATCTGTA 1016
consensus_9301#1 GGTCAGANATGAAATANAACATCTTCTGGGATGATAATGAAAAACATGGGCACATCTGTN 929
******* ******** ************ *********** * ***** *********
consensus_9301#0 TCTAAC-AAGGAAGCAATTACAAAACCA-GCAAGTT-GAGGCTTTAATATCATC-GGCTG 1072
consensus_9301#1 TCTAACCAGGGANACNATTACCAAACCCCGCNAGTTTGANGCTTTNATATCNTCCGGCTG 989
****** * *** * ***** ***** ** **** ** ***** ***** ** *****
consensus_9301#0 CTTCCAATAGCATTGTTCCTGGAGGAACAAGTCTGTCCAGGTTGAACAATAGTTTTCGGC 1132
consensus_9301#1 CTTCCAATNGCNTTGTTCCTGGANGAACAAATCTGTCCAGGTTGAACAATAGTTTTCGGC 1049
******** ** *********** ****** *****************************
consensus_9301#0 GCAGCGTGAGCATCGCTACAAGCATGCATTTGGATAATGACGTGGAAGACCTAGAAATGT 1192
consensus_9301#1 GCANCGTGAGCNTCCCTNCNAGCCTGCCTTTGGATNATGACNTGGAAAACCTANAAATGT 1109
*** ******* ** ** * *** *** ******* ***** ***** ***** ******
consensus_9301#0 TGCTTGAGGCTTACTTCATGCAATTGGATGGAATTCGCAACAGAATTTTG-TCGGTTCGA 1251
consensus_9301#1 TGCTTGAAGGCTNCCTCCCGCCANTGGGNTGGATTCCNNCCCAAATTTTGGTCGGTCCAA 1169
******* * * * ** ** * *** * **** * ******* ***** * *
consensus_9301#0 GAGTATATTGATGATACAGAAGACTATGTCAATATTCAACTTGACAACCAGCGTAATGAA 1311
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 CTTATTCAGCTTCAGCTTACACTGACTATTGCATCCTTCGGCATAGCTGTCAACACCTTC 1371
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 ATAGCTGGGGCTTTTGCGATGAACATCCAGAGCAAATTGTACAGCATTGATGATGGTAGC 1431
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 TTCTTTTGGCCATTTGTTGGGGGCACCTCATCGGGCTGCTTCATGATCTGCATCGTCTTA 1491
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 TTATGGTATGCCCGGTGGAAGAAGTTGCTCGGTCCTTGAACACAATGTAACAAGTCACGA 1551
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 CTCATGAGAACTGTCTCGCTGTAAAGGGCATGCATTTTGACTCGTAACGTCTGCAGAAAG 1611
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 GAGCAGTCATTTGAAACATAAAAGAGAATCCTAGGATTAGGGAGAAACTCTAATGCATTT 1671
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 ATGTTTCACTGGTAAATAAGATACATTTCTGTAGTTTCCCCTTGGTAAAAATGTAGTATA 1731
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 CTAACATGTTATGATCATCAGCACCCTTG 1760
consensus_9301#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||