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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1395 fasta sequence
[CTCATCGCCAGAGTCGGGGGTGGGTGACTCTGATGAGGAATCGGAATCAGATTATGAGGGGAGAGATGGCAATGATGATGGTGATAGTGACGACGAAGGCAGTGATGTCAACGAAGGTGGTTCGGAGTCTGATGAAGAGTTGTCTGGATCAGATTCAGAGGAAGACTTGAGCATTGGTGATTCATCAGTTGATGATGAGGTTGTTGCCGATTACATGGAGGGGATCGGCGGGAGTGAGGAGCTGTTAAGCAGCAAGTGGGTGGCTGGAATGAATTTGGTCGATTCAGATGATGACGATGAGATGGATACAGATGAGGATGAGGATGGGTTCTTGAAGAAGGTGAAGGGACAGCTTGAGGGTTATGCCTTGATGAATGCATCCGAGCAGTATGGGATGAAGAGGCCGAGCTCAGCAGATCGGTTGAAGGGAAAGGGCACTGCTGTCAGGGCTTGTGACCGGGACCTGGCAAGTATGCGAGTGATGGGTCTGGATGCTGTGATGATGGTAAAGGATGTACGCATGGCAAACAGATTAAGAAAGGGAGCAAAGGTGGCTTCATCATCTTCTCACCTCTCCAGGTCCTGGCCTAATGAGGGTAGGAAGAGCAAGAAGTATCAGAGTGTACCAGGTGAGAAAAAGAAGCATCGGAAGGAACTCATTGCAAAGAAGCGCCGCCAACGAATGCTAGGCAGAGGAGTTGATTTAGATCAAATTAATACTAAATTGAGGAAGATGGTCGTAGATCAGGTTGATATGGTATGCTTCCAACCAATGCACACTCGAGACTGTTCGCA-GGTTC-ACGCCTTGCATCTATTTATCACTTGAAGAGTGGGTGTCAAGGTTCAGGAAAGAAAAGATTTGTCACTGTGACATTAACCGCGGATTCTTCTTTACCATCTTCTGAGGGCCAAATCCGACTTGAAAAGCTCTTGGGAACTGAGCCTGAGGACTTTACTGTCAATTGGGAGAACTCTAAACGTCCAGCCCAAGTGAAGGGCCTCTCAGCTCCAGGAAAGTTGGCAAGGAATCAGACTTCCAGTGGAAAGAAATCTTCCAAGAAACAAGTATCATTTGCTGAACGTCCTGTATCTTTTGTCTCCTGTGGCACTATGGCGGAATCTGTTACTGAGACAATTGCAGTTGCCACAACCAGTGGTGAAGTCTCATGTGAGAAAATTGTTGAAAGCGACTCTGTCAAGCTGGGAACCTTTGAGATGBACACCAAGGGCTTTGGKTCTAAGAWGATGGCTAAGATDGGGATTCAYTTGAGGGGAACTCBBCCTCTGGCAAAGATAKGCCAAGGCATKATGCMGCCCMTCCASGCCMATTCAACGTGCCCMAATCTCTTTGGACTCGGGGGGTAGAAAWTTTKACAGCGAGGSTSAGGGGAATCT]
[+] EMBL CB662629 [CTCATCGCCAGAGTCGGGGGTGGGTGACTCTGATGAGGAATCGGAATCAGATTATGAGGGGAGAGATGGCAATGATGATGGTGATAGTGACGACGAAGGCAGTGATGTCAACGAAGGTGGTTCGGAGTCTGATGAAGAGTTGTCTGGATCAGATTCAGAGGAAGACTTGAGCATTGGTGATTCATCAGTTGATGATGAGGTTGTTGCCGATTACATGGAGGGGATCGGCGGGAGTGAGGAGCTGTTAAGCAGCAAGTGGGTGGCTGGAATGAATTTGGTCGATTCAGATGATGACGATGAGATGGATACAGATGAGGATGAGGATGGGTTCTTGAAGAAGGTGAAGGGACAGCTTGAGGGTTATGCCTTGATGAATGCATCCGAGCAGTATGGGATGAAGAGGCCGAGCTCAGCAGATCGGTTGAAGGGAAAGGGCACTGCTGTCAGGGCTTGTGACCGGGACCTGGCAAGTATGCGAGTGATGGGTCTGGATGCTGTGATGATGGTAAAGGATGTACGCATGGCAAACAGATTAAGAAAGGGAGCAAAGGTGGCTTCATCATCTTCTCACCTCTCCAGGTCCTGGCCTAATGAGGGTAGGAAGAGCAAGAAGTATCAGAGTGTACCAGGTGAGAAAAAGAAGCATCGGAAGGAACTCATTGCAAAGAAGCGCCGCCAACGAATGCTAGGCAGAGGAGTTGATTTAGATCAAATTAATACTAAATTGAGGAAGATGGTCGTAGATCAGGTTGATATGGTATGCTTCCAACCAATGCACACTCGAGACTGTTCGCAGGGTTC ACGC ]
[+] EMBL CB662630 [CTCCTTGCCAGAGTCGGGGGTGGGTGACTCTGATGAGGAATCGGAATCAGATTATGAGGGGAGAGATGGCAATGCTGATGGTGATAGTGACGACGAAGGCAGTGATGTCAACGAAGGTGGTTCGGAGTCTGATGAAGAGTTGTCTGGATCAGATTCAGAGGAAGACTTGAGCATTGGTGATTCATCAGTTGATGATGAGGTTGTTGCCGATTACATGGAGGGGATCGGCGGGAGTGAGGAGCTGTTAAGCAGCAAGTGGGTGGCTGGAATGAATTTGGTCGATTCAGATGATGACGATGAGATGGATACAGATGAGGATGAGGATGGGTTCTTGAAGAAGGTGAAGGGACAGCTTGAGGGTTATGCCTTGATGAATGCATCCGAGCAGTATGGGATGAAGAGGCCGAGCTCAGCAGATCGGTTGAAGGGAAAGGGCACTGCTGTCAGGGCTTGTGACCGGGACCTGGCAAGTATGCGAGTGATGGGTCTGGATGCTGTGATGATGGTAAAGGATGTACGCATGGCAAACAGATTAAGAAAGGGAGCAAAGGTGGCTTCATCATCTTCTCACCTCTCCAGGTCCTGGCCTAATGAGGGTAGGAAGAGCAAGAAGTATCAGAGTGTACCAGGTGAGAAAAAGAAGCATCGGAAGGAACTCATTGCAAAGAAGCGCCGCCAACGAATGCTAGGCAGAGGAGTTGATTTAGATCAAATTAATACTAAATTGAGGAAGATGGTCGTAGATCAGGTTGA ]
[+] EMBL AU101180 [ TCGGAAGGAACTCATTGCAAAGAAGCGCCGCCAACGAATGCTAGGCAGAGGAGTTGATTTAGATCAAATTAATACTAAATTGAGGAAGATGGTCGTAGATCAGGTTGATATGGTATGCTTCCAACCAATGCACACTCGAGACTGTTCGCA GGTTCAACGCCTTGCATCTATTTATCACTTGAAGAGTGGGTGTCAAGGTTCAGGAAAGAAAAGATTTGTCACTGTGACATTAACCGCGGATTCTTCTTTACCATCTTCTGAGGGCCAAATCCGACTTGAAAAGCTCTTGGGAACTGAGCCTGAGGACTTTACTGTCAATTGGGAGAACTCTAAACGTCCAGCCCAAGTGAAGGGCCTCTCAGCTCCAGGAAAGTTGGCAA ]
[+] EMBL CF311362 [ CGAGACTGTTCGCA GGTTCAACGCCTTGCATCTATTTATCACTTGA AGTGGGTGTCAAGGTTCAGGAAAGAAAAGATTTGTCACTGTGACATTAACCGCGGATTCTTCTTTACCATCTTCTGAGGGCCAAATTCGACTTGAAAAGCTCTTGGGAACTGAGCCTGAGGACTTTACTGTCAATTGGGAGAACTCTAAACGTCCAGCCCAAGTGAAGGGCCTCTCAGCTCCAGGAAAGTTGGCAAGGAATCAGACTTCCAGTGGAAAGAAATCTTCCAAGAAACAAGTATCATTTGCTGAACGTCCTGTATCTTTTGTCTCCTGTGGCACTATGGCGGAATCTGTTACTGAGACAATTGCAGTTGCCACAACCAGTGGTGAAGTCTCATGTGAGAAAATTGTTGAAAGCGACTCTGTCAAGCTGGGAACCTTTGAGA ]
[+] EMBL AA752664 [ AAACGTCCAGCCCAAGTGAAGGGCCTCTCAGCTCCAGGAAAGTTGGCAAGGAATCAGACTTCCAGTGGAAAGAAATCTTCCAAGAAACAAGTATCATTTGCTGAACGTCCTGTATCTTTTGTCTCCTGTKGCACTATGGCGGAATCTGTTACTGAGACAATTGCAGTTGCCACAACCAGTGGTGAAGTCTCATGTGAGAAAATTGTTGAAAGCGACTCTGTYAAGCTKGGAACCTTTNAGATGBACACCAAGGGCTTTGGKTCTAAGAWGATGGCTAAGATDGGGATTCAYTTGAGGGGAACTCBBCCTCTGGCAAAGATAKGCCAAGGCATKATGCMGCCCMTCCASGCCMATTCAACGTGCCCMAATCTCTTTGGACTCGGGGGGTAGAAAWTTTKACAGCGAGGSTSAGGGGAATCT]
consensusID : consensus_9303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[GTCGATTCAGATGATGACGTTGAGAGGGATAAAGATGAGGATGAGGATGGGTTTTGANAGAAGTGCAAGGACAAGCTGGAGGGTTATGCCTTGATGAATGCATCCGAGCAGTATGGGATGAAGAGGCCGAGCTCAGCAGATCGGTTGAAGGGAAAGGGCACTGCTGTCAGGGCTTGTGACCGGGACCTGGCAAGTATGCGAGTGATGGGTCTGGATGATGTGATGATGGTAAAGGATGTACGCATGGCAAACAGATTAAGAAAGGGAGCAAAGGTGGCTTCATCATCTTCTCACCTCTCCAGGTCCTGGCCTAATGAGGGTAGGAAGAGCAAGAAGTATCAGAGTGTACCAGGTGAGAAAAAGAAGCATCGGAAGGAACTCATTGCAAAGAAGCGCCGCCAACGAATGCTAGGCAGAGGAGTTGATTTAGATCAAATTAATACTGTGAGTTTTATAGTTGCTTTCACATGAAGTGACCTTATTTTGAAAGTTATGCCCGTATGATTCTAAATCATCATAGCAGGAGTCTAGTTATTTTCTAATTCTCCAGCTCAATCCCCTAAAAAAAAAGGCAAGCACACAGTCATTAATGTCTATGATATGGTATAAAGATATTAGGGATTGTACAAAGTTCAGTGATAAATGCAAGAAAATAGTAGTAATCCAAAAAAAAAAAAAA]
[-] EMBL CA762598 [GTCGATTCAGATGATGACGTTGAGAGGGATAAAGATGAGGATGAGGATGGGTTTTGANAGAAGTGCAAGGACAAGCTGGAGGGTTATGCCTTGATGAATGCATCCGAGCAGTATGGGATGAAGAGGCCGAGCTCAGCAGATCGGTTGAAGGGAAAGGGCACTGCTGTCAGGGCTTGTGACCGGGACCTGGCAAGTATGCGAGTGATGGGTCTGGATGATGTGATGATGGTAAAGGATGTACGCATGGCAAACAGATTAAGAAAGGGAGCAAAGGTGGCTTCATCATCTTCTCACCTCTCCAGGTCCTGGCCTAATGAGGGTAGGAAGAGCAAGAAGTATCAGAGTGTACCAGGTGAGAAAAAGAAGCATCGGAAGGAACTCATTGCAAAGAAGCGCCGCCAACGAATGCTAGGCAGAGGAGTTGATTTAGATCAAATTAATACTGTGAGTTTTATAGTTGCTTTCACATGAAGTGACCTTATTTTGAAAGTTATGCCCGTATGATTCTAAATCATCATAGCAGGAGTCTAGTTATTTTCTAATTCTCCAGCTCAATCCCCTAAAAAAAAAGGCAAGCACACAGTCATTAATGTCTATGATATGGTATAAAGATATTAGGGATTGTACAAAGTTCAGTGATAAATGCAAGAAAATAGTAGTAATCCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9303#0 CTCATCGCCAGAGTCGGGGGTGGGTGACTCTGATGAGGAATCGGAATCAGATTATGAGGG 60
consensus_9303#1 ------------------------------------------------------------
consensus_9303#0 GAGAGATGGCAATGATGATGGTGATAGTGACGACGAAGGCAGTGATGTCAACGAAGGTGG 120
consensus_9303#1 ------------------------------------------------------------
consensus_9303#0 TTCGGAGTCTGATGAAGAGTTGTCTGGATCAGATTCAGAGGAAGACTTGAGCATTGGTGA 180
consensus_9303#1 ------------------------------------------------------------
consensus_9303#0 TTCATCAGTTGATGATGAGGTTGTTGCCGATTACATGGAGGGGATCGGCGGGAGTGAGGA 240
consensus_9303#1 ------------------------------------------------------------
consensus_9303#0 GCTGTTAAGCAGCAAGTGGGTGGCTGGAATGAATTTGGTCGATTCAGATGATGACGATGA 300
consensus_9303#1 -------------------------------------GTCGATTCAGATGATGACGTTGA 23
******************* ***
consensus_9303#0 GATGGATACAGATGAGGATGAGGATGGGTTCTTGAAGAAGGTGAAGGGACAGCTTGAGGG 360
consensus_9303#1 GAGGGATAAAGATGAGGATGAGGATGGGTTTTGANAGAAGTGCAAGGACAAGCTGGAGGG 83
** ***** ********************* * ***** **** **** *****
consensus_9303#0 TTATGCCTTGATGAATGCATCCGAGCAGTATGGGATGAAGAGGCCGAGCTCAGCAGATCG 420
consensus_9303#1 TTATGCCTTGATGAATGCATCCGAGCAGTATGGGATGAAGAGGCCGAGCTCAGCAGATCG 143
************************************************************
consensus_9303#0 GTTGAAGGGAAAGGGCACTGCTGTCAGGGCTTGTGACCGGGACCTGGCAAGTATGCGAGT 480
consensus_9303#1 GTTGAAGGGAAAGGGCACTGCTGTCAGGGCTTGTGACCGGGACCTGGCAAGTATGCGAGT 203
************************************************************
consensus_9303#0 GATGGGTCTGGATGCTGTGATGATGGTAAAGGATGTACGCATGGCAAACAGATTAAGAAA 540
consensus_9303#1 GATGGGTCTGGATGATGTGATGATGGTAAAGGATGTACGCATGGCAAACAGATTAAGAAA 263
************** *********************************************
consensus_9303#0 GGGAGCAAAGGTGGCTTCATCATCTTCTCACCTCTCCAGGTCCTGGCCTAATGAGGGTAG 600
consensus_9303#1 GGGAGCAAAGGTGGCTTCATCATCTTCTCACCTCTCCAGGTCCTGGCCTAATGAGGGTAG 323
************************************************************
consensus_9303#0 GAAGAGCAAGAAGTATCAGAGTGTACCAGGTGAGAAAAAGAAGCATCGGAAGGAACTCAT 660
consensus_9303#1 GAAGAGCAAGAAGTATCAGAGTGTACCAGGTGAGAAAAAGAAGCATCGGAAGGAACTCAT 383
************************************************************
consensus_9303#0 TGCAAAGAAGCGCCGCCAACGAATGCTAGGCAGAGGAGTTGATTTAGATCAAATTAATAC 720
consensus_9303#1 TGCAAAGAAGCGCCGCCAACGAATGCTAGGCAGAGGAGTTGATTTAGATCAAATTAATAC 443
************************************************************
consensus_9303#0 TAAATTGAGGAAGATGGTCGTAGATCAGGTTGATATGGTATGCTTCCAACCAATGCACAC 780
consensus_9303#1 TG---TGAGTTTTATAGTTGCT--TTCACATGAAGTGACCTTATTTTGA--AAGTTATGC 496
* **** ** ** * * *** ** * ** * ** * *
consensus_9303#0 TCGAGACTGTTCGCAGGTTCACGCCTTGCATCTATTTATCACTTGAAGAGTGGGTGTCAA 840
consensus_9303#1 CCGTATGATTCTAAATCATCATAGCAGGAGTCTAGTTATTTTCTAATTCTCCAGC-TCAA 555
** * * *** * * **** **** * * * ****
consensus_9303#0 GGTTCAGGAAAGAAAAGATTTGTCACTGTGACATTAACCGCGGATTCTTCTTTACCATCT 900
consensus_9303#1 --TCCCCTAAAAAAAAAGGCAAGCACACAGTCATTAATG---------TCTATGATATGG 604
* * *** **** *** * ****** *** * **
consensus_9303#0 TCTGAGGGCCAAATCCGACTTGAAAAGCTCTTGGGAACTGAGCCTGAGGACTTTACTGTC 960
consensus_9303#1 TATAAAGAT--ATTAGGGATTGTACAAAGTTCAGTGA-TAAATGCAAGAAAATAGTAGTA 661
* * * * * * * *** * * * * * * * ** * * **
consensus_9303#0 AATTGGGAGAACTCTAAACGTCCAGCCCAAGTGAAGGGCCTCTCAGCTCCAGGAAAGTTG 1020
consensus_9303#1 ATCCAAAAAAAAAAAAAA------------------------------------------ 679
* * ** ***
consensus_9303#0 GCAAGGAATCAGACTTCCAGTGGAAAGAAATCTTCCAAGAAACAAGTATCATTTGCTGAA 1080
consensus_9303#1 ------------------------------------------------------------
consensus_9303#0 CGTCCTGTATCTTTTGTCTCCTGTGGCACTATGGCGGAATCTGTTACTGAGACAATTGCA 1140
consensus_9303#1 ------------------------------------------------------------
consensus_9303#0 GTTGCCACAACCAGTGGTGAAGTCTCATGTGAGAAAATTGTTGAAAGCGACTCTGTCAAG 1200
consensus_9303#1 ------------------------------------------------------------
consensus_9303#0 CTGGGAACCTTTGAGATGBACACCAAGGGCTTTGGKTCTAAGAWGATGGCTAAGATDGGG 1260
consensus_9303#1 ------------------------------------------------------------
consensus_9303#0 ATTCAYTTGAGGGGAACTCBBCCTCTGGCAAAGATAKGCCAAGGCATKATGCMGCCCMTC 1320
consensus_9303#1 ------------------------------------------------------------
consensus_9303#0 CASGCCMATTCAACGTGCCCMAATCTCTTTGGACTCGGGGGGTAGAAAWTTTKACAGCGA 1380
consensus_9303#1 ------------------------------------------------------------
consensus_9303#0 GGSTSAGGGGAATCT 1395
consensus_9303#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||