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Oryza sativa
cluster # 9305 cluster # 9305       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9305#0 length = 1905 sequences # 6  

consensusID : consensus_9305#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1905
fasta sequence
                              [ACGCGTCGTGTTGGATCTCAAGGAGGTTCCGGATGCTGTTAATGGACGAGAGCTCCACTTCTCCATGGTTGATGGTGACTTTAAGAAGTTCGAAGGGAAATGGTCCATCAGATCTGGTCCAAGGTCATCTAGTGCAATTTTGTTGTATGAAGTTAATGTGATTCCAAGATTTAATTTCCCAGCAATATTTCTTGAGAGGATCATAAGGTCGGATCTTCCTGTGAATCTTGGAGCGTTGGCCTGTAGAGCTGAAAACATATATTTAGGAAACCAAAGACATGGAACTGCAAAATTTAGTGGTGCAGGCTCCAGGTTTCATAACTTCCGTAATGCAACCACTGAGAATGATGCCATTGCTCCTAGTAAGTTCAAAGAAACACCTCCTTCTGGTCTTGGTGGTGTGCTTGCTTCACCTCCTTCTGAGTTGAACAGCAAATGGGGAGTATATGGAAATGTCTGCAGACTTGATAGGCCGTGTGTGGTAGATGAGATCCATCTTCGAAGATTTGATGGTCTCCTGGAACATGAAGGGGCTCACAGGTTTGTGTTTGCTAGTATCACTGTGAAAGCGCCAGTGCGAGAAGTATGGAATATTCTCACTGCATATGAGAAGTTGCCTGAATTTGTGCCGAATCTGGCTATCAGTAGGATTATTCGTCGGGATAATAACAAGGTTCGCATACTGCAGGAGGGTTGCAAGGGTCTACTTTATATGGTGCTTCATGCCCGTGTTGTTATGGATCTTCGCGAGAAACTTGAACGTGAGATAAGCTTTGAGCAGTTGAAGGTGATTTCTACTCATTTAAAGGAAAATGGCGCCTAGAACAACTTGGTGATCAGCACACCTTATTGAAGTATATGGTTGAGACTAAGATGCATAAAGATACCTTTCTCTCAGAGTCTATCCTTGAAGAGGTCATATATGAAGATCTTCCATCAAACTTATGTGCAATCCGTGATTATATTGAAAAGGCAGAAGCTGAGAGCGGTAACTCCACAAGTAGCTCTATTGTAGCATCAAATGCAGATACTATTGCTATTGATTATGCAGAAGGTAGGCAATCAGAACAAGCATCCACGTCATGTTCTTCGAGTCCTGTGAAGCAGAGACCAAAAGTCCCAGGCCTTCAAAAGGACATTGAGGTCCTCAAATCTGAACTTGAGAAATTTATTGCAAAATATGGTCAGGATGGCTTCATGCCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGCATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACC-GGAAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGG-TGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGA-CCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAA-GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCTCCGGACAAACAGAAATGGCTCCTGAAGC-TGAAGGAT-CTGGATGCTAATTGGATTGAGTACTAACT-AGGAGGACTTCACTAATAC-GGTCCTTCAAATTTATCATCTGACTTCAATGAAGAAGGATCTGATAATCATGTACAGAT-AAAGGTGGGCAAGTTTCTTGCCTACAATACTGGATTACAACACTGTAAGTTTTCCACGCAAAACTCCCCGCTCTGTAAAGTATTCCACAGCTTTTCTTCGTTATCTGTCCTTTTTCTTCAAAAAAAAATTTGAAGTGCTTGG]

[+] EMBL AK068346             [ACGCGTCGTGTTGGATCTCAAGGAGGTTCCGGATGCTGTTAATGGACGAGAGCTCCACTTCTCCATGGTTGATGGTGACTTTAAGAAGTTCGAAGGGAAATGGTCCATCAGATCTGGTCCAAGGTCATCTAGTGCAATTTTGTTGTATGAAGTTAATGTGATTCCAAGATTTAATTTCCCAGCAATATTTCTTGAGAGGATCATAAGGTCGGATCTTCCTGTGAATCTTGGAGCGTTGGCCTGTAGAGCTGAAAACATATATTTAGGAAACCAAAGACATGGAACTGCAAAATTTAGTGGTGCAGGCTCCAGGTTTCATAACTTCCGTAATGCAACCACTGAGAATGATGCCATTGCTCCTAGTAAGTTCAAAGAAACACCTCCTTCTGGTCTTGGTGGTGTGCTTGCTTCACCTCCTTCTGAGTTGAACAGCAAATGGGGAGTATATGGAAATGTCTGCAGACTTGATAGGCCGTGTGTGGTAGATGAGATCCATCTTCGAAGATTTGATGGTCTCCTGGAACATGAAGGGGCTCACAGGTTTGTGTTTGCTAGTATCACTGTGAAAGCGCCAGTGCGAGAAGTATGGAATATTCTCACTGCATATGAGAAGTTGCCTGAATTTGTGCCGAATCTGGCTATCAGTAGGATTATTCGTCGGGATAATAACAAGGTTCGCATACTGCAGGAGGGTTGCAAGGGTCTACTTTATATGGTGCTTCATGCCCGTGTTGTTATGGATCTTCGCGAGAAACTTGAACGTGAGATAAGCTTTGAGCAGTTGAAGGTGATTTCTACTCATTTAAAGGAAAATGGCGCCTAGAACAACTTGGTGATCAGCACACCTTATTGAAGTATATGGTTGAGACTAAGATGCATAAAGATACCTTTCTCTCAGAGTCTATCCTTGAAGAGGTCATATATGAAGATCTTCCATCAAACTTATGTGCAATCCGTGATTATATTGAAAAGGCAGAAGCTGAGAGCGGTAACTCCACAAGTAGCTCTATTGTAGCATCAAATGCAGATACTATTGCTATTGATTATGCAGAAGGTAGGCAATCAGAACAAGCATCCACGTCATGTTCTTCGAGTCCTGTGAAGCAGAGACCAAAAGTCCCAGGCCTTCAAAAGGACATTGAGGTCCTCAAATCTGAACTTGAGAAATTTATTGCAAAATATGGTCAGGATGGCTTCATGCCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGCATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACC GGAAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGG TGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGA CCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAA GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCTCCGGACAAACAGAAATGGCTCCTGAAGC TGAAGGAT CTGGATGCTAATTGGATTGAGTACTAACT AGGAGGACTTCACTAATAC GGTCCTTCAAATTTATCATCTGACTTCAATGAAGAAGGATCTGATAATCATGTACAGAT AAAGGTGGGCAAGTTTCTTGCCTACAATACTGGATTACAACACTGTAAGTTTTCCACGCAAAACTCCCCGCTCTGTAAAGTATTCCACAGCTTTTCTTCGTTATCTGTCCTTTTTCTTCAAAAGAAAATTTGAAGT      ]
[+] EMBL CB096784             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ggggGAAGATCTTCCCTCAAACTTATGTGCAATCCGTGATT CATTGAAAAGGCAGAAGCTGAGAGCGGTAACTCCACAAGTAGCTCTCTTGTAGCATCAAATGCAGATACTATTGCTATTGATTCTGCAGAAGGTAGGCAATCAGAACAAGCATCCACGTCATGTTCTTCGAGTCCTGTGAAGCAGAGACCAAAAGTCCCAGGCCTTCAAAAGGACATTGAGGTCCTCAAATCTGAACTTGAGAAATTTATTGCAAAATATGGTCAGGATGGCTTCATGCCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGCATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACC GGAAACCAAGAGGTTATTGGGATAATCTGGAGAGCTTGCAAGAAGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGGTTGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGACCCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAANGGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAACCCAAGCGTTTCTTCGGACAAACAGAAATGGCTNCTG AGCTTGAANGATCCTGGATGCTAATTGGATTGAGTACTAACTGGGGAGGACTT ACTAATAC CGNCCTTCAAATTTATCATCTGACTTCAtgg                                                                                                                                                                           ]
[+] EMBL CA766944             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         caagggGCAGATACTATTGCTATTGATTATGCAGAAGGTAGGCAATCAGAACAAGCATCCACGTCATGTTCTTCGAGTCCTGTGAAGCAGAGACCAAAAGTCCCAGGCCTTCAAAAGGACATTGAGGTCCTCAAATCTGAACTTGAGAAATTTATTGCAAAATATGGTCAGGATGGCTTCATGCCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGCATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACC GGAAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGG TGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGA CCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAA GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCTCCGGACAAACAGAAATGGCTCCTGAAGC TGAAGGAT CTGGATGCTAATTGGATTGAGTACTAACT GGGAGGACTTCACTAATACNGGCCCTTCAAA TTATCATCTGACTTCAATGAAGAAGGATCTGATAATCATGTACAGATNAAAGGNGGGCAAGNTTCTTGNCTAC ATACTGGATT CAACACTGNNAGNTTTTCACGCAAAct                                                                              ]
[-] EMBL CA763047             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGCATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACC GGAAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGG TGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGA CCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAA GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCTCCGGACAAACAGAAATGGCTCCTGAAGC TGAAGGAT CTGGATGCTAATTGGATTGAGTACTAACT GGGAGGACTTCACTAATAC GGTCCTTCAAATTTATCATCTGACTTCAATGAAGAAGGATCTGATAATCATGTACAGAT AAAGGTGGGCAAGTTTCTTGCCTACAATACTGGATTACAACACTGTAAGTTTTCCACGCAAAACTCCCTGCTCTGTAAAGTATTCCACAGCTTTTTTGCGTTATCTGTCCTTTTTCTTCAAAAAAAAAa             ]
[+] EMBL CB679323             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAAAGTAATAACACGCATGGGTGGGTTCATGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACCACGAAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCACAAAAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCACGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGG TGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCATACGA CCTATAAGGCGAGCCAACTCTGATGATGAGAGTAA GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCTCCAGACAAACAGAAATGGCTCCTGAAGC TGAAGGAT CTGGATGCTAATTGGATTGAGTACTAACT ACGAGGACTTCACTAATAC GGTCCTTCAAATTTATCATCTGACTTCAATGAACAACGATCTGATAATCATGTACAGAT AAAGGTGGGCAAGTTTCTTGCCTACAATACTGGATTACAACACTGTAAGTTTTCCACGCAAAACTCCCCACTCTGTAAAGTATTCCACAGCTTTTCTTCGCTATCTGTCCTTTTTCTTCAAAACAAAATTTGAAGTGCTTG ]
[-] EMBL CB637226             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGCCAACTTTGATGATGAGAGTAA GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGGGTTTTTCCGGACAAACAAAAATGGCTCCTGAAGC TGAAGGAT TTGGATGCTAATTGGATTGAGTACTAACT AGGAGGACTTCAATAAAAC GGTCCTTCAAATTTATCATCTGACTTCAATGAAAAAGGATTTGATAATCATGTACA AT AGAAGTGGGCAAGTTTTTTGCCTACAAAACTGGATTACAACCCTGTAAGTTTTCCACGCAAAACTCCCCGCTTTGTAAAGTATTCCCCAGCTTTTTTTCGTTATCTGTCCTTTTT TTCAAAAAAAAATTTGAAGTGGTTGG]


>consensus_9305#0 ACGCGTCGTGTTGGATCTCAAGGAGGTTCCGGATGCTGTTAATGGACGAGAGCTCCACTT CTCCATGGTTGATGGTGACTTTAAGAAGTTCGAAGGGAAATGGTCCATCAGATCTGGTCC AAGGTCATCTAGTGCAATTTTGTTGTATGAAGTTAATGTGATTCCAAGATTTAATTTCCC AGCAATATTTCTTGAGAGGATCATAAGGTCGGATCTTCCTGTGAATCTTGGAGCGTTGGC CTGTAGAGCTGAAAACATATATTTAGGAAACCAAAGACATGGAACTGCAAAATTTAGTGG TGCAGGCTCCAGGTTTCATAACTTCCGTAATGCAACCACTGAGAATGATGCCATTGCTCC TAGTAAGTTCAAAGAAACACCTCCTTCTGGTCTTGGTGGTGTGCTTGCTTCACCTCCTTC TGAGTTGAACAGCAAATGGGGAGTATATGGAAATGTCTGCAGACTTGATAGGCCGTGTGT GGTAGATGAGATCCATCTTCGAAGATTTGATGGTCTCCTGGAACATGAAGGGGCTCACAG GTTTGTGTTTGCTAGTATCACTGTGAAAGCGCCAGTGCGAGAAGTATGGAATATTCTCAC TGCATATGAGAAGTTGCCTGAATTTGTGCCGAATCTGGCTATCAGTAGGATTATTCGTCG GGATAATAACAAGGTTCGCATACTGCAGGAGGGTTGCAAGGGTCTACTTTATATGGTGCT TCATGCCCGTGTTGTTATGGATCTTCGCGAGAAACTTGAACGTGAGATAAGCTTTGAGCA GTTGAAGGTGATTTCTACTCATTTAAAGGAAAATGGCGCCTAGAACAACTTGGTGATCAG CACACCTTATTGAAGTATATGGTTGAGACTAAGATGCATAAAGATACCTTTCTCTCAGAG TCTATCCTTGAAGAGGTCATATATGAAGATCTTCCATCAAACTTATGTGCAATCCGTGAT TATATTGAAAAGGCAGAAGCTGAGAGCGGTAACTCCACAAGTAGCTCTATTGTAGCATCA AATGCAGATACTATTGCTATTGATTATGCAGAAGGTAGGCAATCAGAACAAGCATCCACG TCATGTTCTTCGAGTCCTGTGAAGCAGAGACCAAAAGTCCCAGGCCTTCAAAAGGACATT GAGGTCCTCAAATCTGAACTTGAGAAATTTATTGCAAAATATGGTCAGGATGGCTTCATG CCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGC ATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACCGG AAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCAG AAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGA CGTTATGACATTGCTCGGGCGTTGGAAAAATGGGGTGGAGTACACGAGGTTTCTCGCCTT CTTTCTCTTGAACTCAGACGACCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAAGGCT GGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCT CCGGACAAACAGAAATGGCTCCTGAAGCTGAAGGATCTGGATGCTAATTGGATTGAGTAC TAACTAGGAGGACTTCACTAATACGGTCCTTCAAATTTATCATCTGACTTCAATGAAGAA GGATCTGATAATCATGTACAGATAAAGGTGGGCAAGTTTCTTGCCTACAATACTGGATTA CAACACTGTAAGTTTTCCACGCAAAACTCCCCGCTCTGTAAAGTATTCCACAGCTTTTCT TCGTTATCTGTCCTTTTTCTTCAAAAAAAAATTTGAAGTGCTTGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)