These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9305#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1905 fasta sequence [ACGCGTCGTGTTGGATCTCAAGGAGGTTCCGGATGCTGTTAATGGACGAGAGCTCCACTTCTCCATGGTTGATGGTGACTTTAAGAAGTTCGAAGGGAAATGGTCCATCAGATCTGGTCCAAGGTCATCTAGTGCAATTTTGTTGTATGAAGTTAATGTGATTCCAAGATTTAATTTCCCAGCAATATTTCTTGAGAGGATCATAAGGTCGGATCTTCCTGTGAATCTTGGAGCGTTGGCCTGTAGAGCTGAAAACATATATTTAGGAAACCAAAGACATGGAACTGCAAAATTTAGTGGTGCAGGCTCCAGGTTTCATAACTTCCGTAATGCAACCACTGAGAATGATGCCATTGCTCCTAGTAAGTTCAAAGAAACACCTCCTTCTGGTCTTGGTGGTGTGCTTGCTTCACCTCCTTCTGAGTTGAACAGCAAATGGGGAGTATATGGAAATGTCTGCAGACTTGATAGGCCGTGTGTGGTAGATGAGATCCATCTTCGAAGATTTGATGGTCTCCTGGAACATGAAGGGGCTCACAGGTTTGTGTTTGCTAGTATCACTGTGAAAGCGCCAGTGCGAGAAGTATGGAATATTCTCACTGCATATGAGAAGTTGCCTGAATTTGTGCCGAATCTGGCTATCAGTAGGATTATTCGTCGGGATAATAACAAGGTTCGCATACTGCAGGAGGGTTGCAAGGGTCTACTTTATATGGTGCTTCATGCCCGTGTTGTTATGGATCTTCGCGAGAAACTTGAACGTGAGATAAGCTTTGAGCAGTTGAAGGTGATTTCTACTCATTTAAAGGAAAATGGCGCCTAGAACAACTTGGTGATCAGCACACCTTATTGAAGTATATGGTTGAGACTAAGATGCATAAAGATACCTTTCTCTCAGAGTCTATCCTTGAAGAGGTCATATATGAAGATCTTCCATCAAACTTATGTGCAATCCGTGATTATATTGAAAAGGCAGAAGCTGAGAGCGGTAACTCCACAAGTAGCTCTATTGTAGCATCAAATGCAGATACTATTGCTATTGATTATGCAGAAGGTAGGCAATCAGAACAAGCATCCACGTCATGTTCTTCGAGTCCTGTGAAGCAGAGACCAAAAGTCCCAGGCCTTCAAAAGGACATTGAGGTCCTCAAATCTGAACTTGAGAAATTTATTGCAAAATATGGTCAGGATGGCTTCATGCCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGCATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACC-GGAAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGG-TGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGA-CCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAA-GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCTCCGGACAAACAGAAATGGCTCCTGAAGC-TGAAGGAT-CTGGATGCTAATTGGATTGAGTACTAACT-AGGAGGACTTCACTAATAC-GGTCCTTCAAATTTATCATCTGACTTCAATGAAGAAGGATCTGATAATCATGTACAGAT-AAAGGTGGGCAAGTTTCTTGCCTACAATACTGGATTACAACACTGTAAGTTTTCCACGCAAAACTCCCCGCTCTGTAAAGTATTCCACAGCTTTTCTTCGTTATCTGTCCTTTTTCTTCAAAAAAAAATTTGAAGTGCTTGG] [+] EMBL AK068346 [ACGCGTCGTGTTGGATCTCAAGGAGGTTCCGGATGCTGTTAATGGACGAGAGCTCCACTTCTCCATGGTTGATGGTGACTTTAAGAAGTTCGAAGGGAAATGGTCCATCAGATCTGGTCCAAGGTCATCTAGTGCAATTTTGTTGTATGAAGTTAATGTGATTCCAAGATTTAATTTCCCAGCAATATTTCTTGAGAGGATCATAAGGTCGGATCTTCCTGTGAATCTTGGAGCGTTGGCCTGTAGAGCTGAAAACATATATTTAGGAAACCAAAGACATGGAACTGCAAAATTTAGTGGTGCAGGCTCCAGGTTTCATAACTTCCGTAATGCAACCACTGAGAATGATGCCATTGCTCCTAGTAAGTTCAAAGAAACACCTCCTTCTGGTCTTGGTGGTGTGCTTGCTTCACCTCCTTCTGAGTTGAACAGCAAATGGGGAGTATATGGAAATGTCTGCAGACTTGATAGGCCGTGTGTGGTAGATGAGATCCATCTTCGAAGATTTGATGGTCTCCTGGAACATGAAGGGGCTCACAGGTTTGTGTTTGCTAGTATCACTGTGAAAGCGCCAGTGCGAGAAGTATGGAATATTCTCACTGCATATGAGAAGTTGCCTGAATTTGTGCCGAATCTGGCTATCAGTAGGATTATTCGTCGGGATAATAACAAGGTTCGCATACTGCAGGAGGGTTGCAAGGGTCTACTTTATATGGTGCTTCATGCCCGTGTTGTTATGGATCTTCGCGAGAAACTTGAACGTGAGATAAGCTTTGAGCAGTTGAAGGTGATTTCTACTCATTTAAAGGAAAATGGCGCCTAGAACAACTTGGTGATCAGCACACCTTATTGAAGTATATGGTTGAGACTAAGATGCATAAAGATACCTTTCTCTCAGAGTCTATCCTTGAAGAGGTCATATATGAAGATCTTCCATCAAACTTATGTGCAATCCGTGATTATATTGAAAAGGCAGAAGCTGAGAGCGGTAACTCCACAAGTAGCTCTATTGTAGCATCAAATGCAGATACTATTGCTATTGATTATGCAGAAGGTAGGCAATCAGAACAAGCATCCACGTCATGTTCTTCGAGTCCTGTGAAGCAGAGACCAAAAGTCCCAGGCCTTCAAAAGGACATTGAGGTCCTCAAATCTGAACTTGAGAAATTTATTGCAAAATATGGTCAGGATGGCTTCATGCCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGCATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACC GGAAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGG TGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGA CCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAA GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCTCCGGACAAACAGAAATGGCTCCTGAAGC TGAAGGAT CTGGATGCTAATTGGATTGAGTACTAACT AGGAGGACTTCACTAATAC GGTCCTTCAAATTTATCATCTGACTTCAATGAAGAAGGATCTGATAATCATGTACAGAT AAAGGTGGGCAAGTTTCTTGCCTACAATACTGGATTACAACACTGTAAGTTTTCCACGCAAAACTCCCCGCTCTGTAAAGTATTCCACAGCTTTTCTTCGTTATCTGTCCTTTTTCTTCAAAAGAAAATTTGAAGT ] [+] EMBL CB096784 [ ggggGAAGATCTTCCCTCAAACTTATGTGCAATCCGTGATT CATTGAAAAGGCAGAAGCTGAGAGCGGTAACTCCACAAGTAGCTCTCTTGTAGCATCAAATGCAGATACTATTGCTATTGATTCTGCAGAAGGTAGGCAATCAGAACAAGCATCCACGTCATGTTCTTCGAGTCCTGTGAAGCAGAGACCAAAAGTCCCAGGCCTTCAAAAGGACATTGAGGTCCTCAAATCTGAACTTGAGAAATTTATTGCAAAATATGGTCAGGATGGCTTCATGCCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGCATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACC GGAAACCAAGAGGTTATTGGGATAATCTGGAGAGCTTGCAAGAAGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGGTTGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGACCCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAANGGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAACCCAAGCGTTTCTTCGGACAAACAGAAATGGCTNCTG AGCTTGAANGATCCTGGATGCTAATTGGATTGAGTACTAACTGGGGAGGACTT ACTAATAC CGNCCTTCAAATTTATCATCTGACTTCAtgg ] [+] EMBL CA766944 [ caagggGCAGATACTATTGCTATTGATTATGCAGAAGGTAGGCAATCAGAACAAGCATCCACGTCATGTTCTTCGAGTCCTGTGAAGCAGAGACCAAAAGTCCCAGGCCTTCAAAAGGACATTGAGGTCCTCAAATCTGAACTTGAGAAATTTATTGCAAAATATGGTCAGGATGGCTTCATGCCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGCATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACC GGAAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGG TGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGA CCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAA GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCTCCGGACAAACAGAAATGGCTCCTGAAGC TGAAGGAT CTGGATGCTAATTGGATTGAGTACTAACT GGGAGGACTTCACTAATACNGGCCCTTCAAA TTATCATCTGACTTCAATGAAGAAGGATCTGATAATCATGTACAGATNAAAGGNGGGCAAGNTTCTTGNCTAC ATACTGGATT CAACACTGNNAGNTTTTCACGCAAAct ] [-] EMBL CA763047 [ GCCTAAGAGAAAACACCTTCGTTTGCATGGAAGGGTGGATATCGAGAAGGCAATAACACGCATGGGTGGGTTCAGGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACC GGAAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGG TGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGA CCTAGAAGGCGAGCCAACTCTGATGATGAGAGTAA GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCTCCGGACAAACAGAAATGGCTCCTGAAGC TGAAGGAT CTGGATGCTAATTGGATTGAGTACTAACT GGGAGGACTTCACTAATAC GGTCCTTCAAATTTATCATCTGACTTCAATGAAGAAGGATCTGATAATCATGTACAGAT AAAGGTGGGCAAGTTTCTTGCCTACAATACTGGATTACAACACTGTAAGTTTTCCACGCAAAACTCCCTGCTCTGTAAAGTATTCCACAGCTTTTTTGCGTTATCTGTCCTTTTTCTTCAAAAAAAAAa ] [+] EMBL CB679323 [ GAAAGTAATAACACGCATGGGTGGGTTCATGAAGATTGCCAGCATAATGAATCTTTCACTTTCTTATAAAAACCACGAAACCAAGAGGTTATTGGGATAATCTGGAGAACTTGCAAGAAGAGATCAGGCGATTCCACAAAAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCACGACGTTATGACATTGCTCGGGCGTTGGAAAAATGGGG TGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCATACGA CCTATAAGGCGAGCCAACTCTGATGATGAGAGTAA GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGCGTTTCTCCAGACAAACAGAAATGGCTCCTGAAGC TGAAGGAT CTGGATGCTAATTGGATTGAGTACTAACT ACGAGGACTTCACTAATAC GGTCCTTCAAATTTATCATCTGACTTCAATGAACAACGATCTGATAATCATGTACAGAT AAAGGTGGGCAAGTTTCTTGCCTACAATACTGGATTACAACACTGTAAGTTTTCCACGCAAAACTCCCCACTCTGTAAAGTATTCCACAGCTTTTCTTCGCTATCTGTCCTTTTTCTTCAAAACAAAATTTGAAGTGCTTG ] [-] EMBL CB637226 [ AGCCAACTTTGATGATGAGAGTAA GGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGCCAAACAAACCAAGGGTTTTTCCGGACAAACAAAAATGGCTCCTGAAGC TGAAGGAT TTGGATGCTAATTGGATTGAGTACTAACT AGGAGGACTTCAATAAAAC GGTCCTTCAAATTTATCATCTGACTTCAATGAAAAAGGATTTGATAATCATGTACA AT AGAAGTGGGCAAGTTTTTTGCCTACAAAACTGGATTACAACCCTGTAAGTTTTCCACGCAAAACTCCCCGCTTTGTAAAGTATTCCCCAGCTTTTTTTCGTTATCTGTCCTTTTT TTCAAAAAAAAATTTGAAGTGGTTGG] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||