cluster # 9307

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Oryza sativa
cluster # 9307 cluster # 9307 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9307#0 length = 501 sequences # 1

consensus_9307#1 length = 312 sequences # 4
consensus_9307#2 length = 109 sequences # 1

consensusID : consensus_9307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [AGGAGGTCAACGAGGCGCCGAGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGGTCCCCGTGCTCGTCCACCGCGGCCGCCCGCTCGCCGAGTCCGTCATCATCCTCCAGTACCTCGACGACGCCTGGCCGGAGAGCCGCCCCCTCCTCCCCTCCGACCCCTTCTTANCCTGCGCCCTCGCTCGCTTCTGGTGCCACTTCGCCGACGATAAGCTTGGGCCGGCCGGTTGGGGGCGGTGNTCGCGTGACGGGGAGGACAGAGCCGGCGGTGCATCAGGTGCACGACAACCTTGGCCGCTTGCTGGAGCGGANCTTCCGGGAGGGCGTCAAGGGCGGAGTTCTTCGCGGNGACCAGGTGGGCCCTCCTCGACAGTCGTGCTCGGG]

[+] EMBL AA752929             [AGGAGGTCAACGAGGCGCCGAGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGGTCCCCGTGCTCGTCCACCGCGGCCGCCCGCTCGCCGAGTCCGTCATCATCCTCCAGTACCTCGACGACGCCTGGCCGGAGAGCCGCCCCCTCCTCCCCTCCGACCCCTTCTTANCCTGCGCCCTCGCTCGCTTCTGGTGCCACTTCGCCGACGATAAGCTTGGGCCGGCCGGTTGGGGGCGGTGNTCGCGTGACGGGGAGGACAGAGCCGGCGGTGCATCAGGTGCACGACAACCTTGGCCGCTTGCTGGAGCGGANCTTCCGGGAGGGCGTCAAGGGCGGAGTTCTTCGCGGNGACCAGGTGGGCCCTCCTCGACAGTCGTGCTCGGG]




>consensus_9307#0
AGGAGGTCAACGAGGCGCCGAGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACG
CACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGAC
CTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGGTCCCCGTG
CTCGTCCACCGCGGCCGCCCGCTCGCCGAGTCCGTCATCATCCTCCAGTACCTCGACGAC
GCCTGGCCGGAGAGCCGCCCCCTCCTCCCCTCCGACCCCTTCTTANCCTGCGCCCTCGCT
CGCTTCTGGTGCCACTTCGCCGACGATAAGCTTGGGCCGGCCGGTTGGGGGCGGTGNTCG
CGTGACGGGGAGGACAGAGCCGGCGGTGCATCAGGTGCACGACAACCTTGGCCGCTTGCT
GGAGCGGANCTTCCGGGAGGGCGTCAAGGGCGGAGTTCTTCGCGGNGACCAGGTGGGCCC
TCCTCGACAGTCGTGCTCGGG

consensusID : consensus_9307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 312
fasta sequence

                              [CGACACGCCAAAGAACACACACGAGTAGACAACCACTAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGGTCCCCGTGCTCGT]

[+] EMBL AF402803             [CGACACGCCAAAGAACACACACGAGTAGACAACCACTAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGGTCCCCGTGCTCGT]
[+] EMBL AU064440             [           AGAACACACACGAGTAGACAACCACTAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTACGGGTCGTGGGCGAGCNCGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGC CCTCAACCCGGTGCACAAGAAGGTCCCCGT      ]
[+] EMBL AU063606             [                            ACAACCACTAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCT CGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCNNAGACAAGAGCGAGGCG                                            ]
[+] EMBL AU063609             [                            ACAACCACTAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCT CGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGNANACAAGAGCGAGGCG                                            ]




>consensus_9307#1
CGACACGCCAAAGAACACACACGAGTAGACAACCACTAGTCCAGTCTCCAGTGTCACTCG
ACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGA
GAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTC
GTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGA
GGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGGT
CCCCGTGCTCGT

consensusID : consensus_9307#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 109
fasta sequence

                              [CGAAGTGGCACCAGAAGCGAGCGAGGGCACGGTCGAAGGGTCGGAGGGGAGGAGGGGCAGGCTCTCCAGGCCAGGCGTCGTCGAGGTACTGGAGGATGATGACGACTCG]

[+] EMBL BI806857             [CGAAGTGGCACCAGAAGCGAGCGAGGGCACGGTCGAAGGGTCGGAGGGGAGGAGGGGCAGGCTCTCCAGGCCAGGCGTCGTCGAGGTACTGGAGGATGATGACGACTCG]




>consensus_9307#2
CGAAGTGGCACCAGAAGCGAGCGAGGGCACGGTCGAAGGGTCGGAGGGGAGGAGGGGCAG
GCTCTCCAGGCCAGGCGTCGTCGAGGTACTGGAGGATGATGACGACTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9307#0      ------------------------------------------------------------
consensus_9307#1      CGACACGCCAAAGAACACACACGAGTAGACAACCACTAGTCCAGTCTCCAGTGTCACTCG 60
consensus_9307#2      ------------------------------------------------------------
                                                                                  

consensus_9307#0      ------------------------------------------------------------
consensus_9307#1      ACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGA 120
consensus_9307#2      ------------------------------------------------------------
                                                                                  

consensus_9307#0      --------AGGAGGTCAACGAGGCGCCGAGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCT 52
consensus_9307#1      GAAGCAGGAGAACGGAGGGGAGGCGCCG-GAGCTGAAGCTGTTCGGGTCGTGGGCGAGCT 179
consensus_9307#2      ---------------------------------CGAAGTGGCACCAGAAGCGAGCGAGG- 26
                                                        ****  *  *  *  * * *****  

consensus_9307#0      CGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCG 112
consensus_9307#1      CGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCG 239
consensus_9307#2      -GCACGGTCGAAGGGTCGGAGGGGAGGAGGGGC---AGGCTCTCCAGGCCAGG--CGTCG 80
                       * **   *   ****      ** *  * ***   **** **  **  *  *  ** **

consensus_9307#0      AGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGG 172
consensus_9307#1      AGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGG 299
consensus_9307#2      TCGAGGTACTGGAGGATGATGACGACTCG------------------------------- 109
                        ****  ** *   *  *   ***  **                               

consensus_9307#0      TCCCCGTGCTCGTCCACCGCGGCCGCCCGCTCGCCGAGTCCGTCATCATCCTCCAGTACC 232
consensus_9307#1      TCCCCGTGCTCGT----------------------------------------------- 312
consensus_9307#2      ------------------------------------------------------------
                                                                                  

consensus_9307#0      TCGACGACGCCTGGCCGGAGAGCCGCCCCCTCCTCCCCTCCGACCCCTTCTTANCCTGCG 292
consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
                                                                                  

consensus_9307#0      CCCTCGCTCGCTTCTGGTGCCACTTCGCCGACGATAAGCTTGGGCCGGCCGGTTGGGGGC 352
consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
                                                                                  

consensus_9307#0      GGTGNTCGCGTGACGGGGAGGACAGAGCCGGCGGTGCATCAGGTGCACGACAACCTTGGC 412
consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
                                                                                  

consensus_9307#0      CGCTTGCTGGAGCGGANCTTCCGGGAGGGCGTCAAGGGCGGAGTTCTTCGCGGNGACCAG 472
consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
                                                                                  

consensus_9307#0      GTGGGCCCTCCTCGACAGTCGTGCTCGGG 501
consensus_9307#1      -----------------------------
consensus_9307#2      -----------------------------