These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [AGGAGGTCAACGAGGCGCCGAGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGGTCCCCGTGCTCGTCCACCGCGGCCGCCCGCTCGCCGAGTCCGTCATCATCCTCCAGTACCTCGACGACGCCTGGCCGGAGAGCCGCCCCCTCCTCCCCTCCGACCCCTTCTTANCCTGCGCCCTCGCTCGCTTCTGGTGCCACTTCGCCGACGATAAGCTTGGGCCGGCCGGTTGGGGGCGGTGNTCGCGTGACGGGGAGGACAGAGCCGGCGGTGCATCAGGTGCACGACAACCTTGGCCGCTTGCTGGAGCGGANCTTCCGGGAGGGCGTCAAGGGCGGAGTTCTTCGCGGNGACCAGGTGGGCCCTCCTCGACAGTCGTGCTCGGG] [+] EMBL AA752929 [AGGAGGTCAACGAGGCGCCGAGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGGTCCCCGTGCTCGTCCACCGCGGCCGCCCGCTCGCCGAGTCCGTCATCATCCTCCAGTACCTCGACGACGCCTGGCCGGAGAGCCGCCCCCTCCTCCCCTCCGACCCCTTCTTANCCTGCGCCCTCGCTCGCTTCTGGTGCCACTTCGCCGACGATAAGCTTGGGCCGGCCGGTTGGGGGCGGTGNTCGCGTGACGGGGAGGACAGAGCCGGCGGTGCATCAGGTGCACGACAACCTTGGCCGCTTGCTGGAGCGGANCTTCCGGGAGGGCGTCAAGGGCGGAGTTCTTCGCGGNGACCAGGTGGGCCCTCCTCGACAGTCGTGCTCGGG] consensusID : consensus_9307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 312 fasta sequence [CGACACGCCAAAGAACACACACGAGTAGACAACCACTAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGGTCCCCGTGCTCGT] [+] EMBL AF402803 [CGACACGCCAAAGAACACACACGAGTAGACAACCACTAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGGTCCCCGTGCTCGT] [+] EMBL AU064440 [ AGAACACACACGAGTAGACAACCACTAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTACGGGTCGTGGGCGAGCNCGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGC CCTCAACCCGGTGCACAAGAAGGTCCCCGT ] [+] EMBL AU063606 [ ACAACCACTAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCT CGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCNNAGACAAGAGCGAGGCG ] [+] EMBL AU063609 [ ACAACCACTAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTGCAGCTGGCGCT CGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGNANACAAGAGCGAGGCG ] consensusID : consensus_9307#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 109 fasta sequence [CGAAGTGGCACCAGAAGCGAGCGAGGGCACGGTCGAAGGGTCGGAGGGGAGGAGGGGCAGGCTCTCCAGGCCAGGCGTCGTCGAGGTACTGGAGGATGATGACGACTCG] [+] EMBL BI806857 [CGAAGTGGCACCAGAAGCGAGCGAGGGCACGGTCGAAGGGTCGGAGGGGAGGAGGGGCAGGCTCTCCAGGCCAGGCGTCGTCGAGGTACTGGAGGATGATGACGACTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9307#0 ------------------------------------------------------------ consensus_9307#1 CGACACGCCAAAGAACACACACGAGTAGACAACCACTAGTCCAGTCTCCAGTGTCACTCG 60 consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 ------------------------------------------------------------ consensus_9307#1 ACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTATGGA 120 consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 --------AGGAGGTCAACGAGGCGCCGAGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCT 52 consensus_9307#1 GAAGCAGGAGAACGGAGGGGAGGCGCCG-GAGCTGAAGCTGTTCGGGTCGTGGGCGAGCT 179 consensus_9307#2 ---------------------------------CGAAGTGGCACCAGAAGCGAGCGAGG- 26 **** * * * * * ***** consensus_9307#0 CGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCG 112 consensus_9307#1 CGTACACGCACCGGGTGCAGCTGGCGCTGCGGCTCAAGGCGCTGGAGTTCGTGTACGCCG 239 consensus_9307#2 -GCACGGTCGAAGGGTCGGAGGGGAGGAGGGGC---AGGCTCTCCAGGCCAGG--CGTCG 80 * ** * **** ** * * *** **** ** ** * * ** ** consensus_9307#0 AGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGG 172 consensus_9307#1 AGGAGGACCTCGGCAACAAGAGCGAGGCGCTGCTGCGCCTCAACCCGGTGCACAAGAAGG 299 consensus_9307#2 TCGAGGTACTGGAGGATGATGACGACTCG------------------------------- 109 **** ** * * * *** ** consensus_9307#0 TCCCCGTGCTCGTCCACCGCGGCCGCCCGCTCGCCGAGTCCGTCATCATCCTCCAGTACC 232 consensus_9307#1 TCCCCGTGCTCGT----------------------------------------------- 312 consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 TCGACGACGCCTGGCCGGAGAGCCGCCCCCTCCTCCCCTCCGACCCCTTCTTANCCTGCG 292 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 CCCTCGCTCGCTTCTGGTGCCACTTCGCCGACGATAAGCTTGGGCCGGCCGGTTGGGGGC 352 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 GGTGNTCGCGTGACGGGGAGGACAGAGCCGGCGGTGCATCAGGTGCACGACAACCTTGGC 412 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 CGCTTGCTGGAGCGGANCTTCCGGGAGGGCGTCAAGGGCGGAGTTCTTCGCGGNGACCAG 472 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 GTGGGCCCTCCTCGACAGTCGTGCTCGGG 501 consensus_9307#1 ----------------------------- consensus_9307#2 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||