cluster # 9308

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Oryza sativa
cluster # 9308 cluster # 9308 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9308#0 length = 1238 sequences # 4

consensus_9308#1 length = 365 sequences # 2

consensusID : consensus_9308#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1238
fasta sequence

                              [CNGNGGCGCTCTCTCTCTCTCTCTTCTCCTCGCCGGCGAGCGCGTCTCGAGATGCCCGCGGCGGCGGCGGCGGCGGCGCGCGGCCCGCTCCTCCATCTCCGGCGGAACCCGGCGCCACGCCTTGCCGCCGCCCGCCGCTCCTTCTCCTCTTCCGGGATGCGGTGCGTCAGCGCGGCCGCGGGCGCGGGCGGCGGCGGGAGGGAGCGGCGGTCGTCGCCGGCGTTCGGCGGGCTGCTGCTCGACGCCGGGGGCACGCTGCTGCAGCTGGCGCGGCCAGTCGCCCAGACGTACGCGTCCCTCGGCCGGCGATACGGTATGAGCAAGAGTGAGGAGAGCATCAAGGAGGGATTCAAGCGGGCCTTCTCCGCGCCATGGCCAAAGACGCTCAGATACCAGGGAGATGGACGGCCGTTCTGGAGGATTGTGGTGGC-GAGGCAACCGAATGCACCAATAATGATTATTTCGAAGAAGTATATGAGTATTACGCTCATGGAGATGCATGGCGTCTGCCTGCTGGGGCTTACGAAACACTGCGTGATCTAAAGGATGCTGGAGTTAAGCTAGCTGTTGTATCTAACTTCGACACACGGTTACGAAAATTACTTAAGGACCTTCATGTCTCGGATATGTTTGATGCCATTGTTGTATCATCGGAGGTTGGACATGAAAAACCTGCTCCAGAGATCTTCAAGAGAGCATTAGATCAAATTGGCGTAGAGGCCAGCAAGGCAGTACATGTTGGAGATGATGAAACTGCAGACAAGGCAGGTGCTAATGCCATAGGGCTTGAGTGCTGGCTGTGGGGACAGGATGTGAGGACATTTTCTGAGATACAAGACCGGATTCTAACAAGATTTCCACAATGACATCATAGAAACCTCACCGCAGGTATATATTGCTCTGACCATGCATGCAAGGATGATCAGGATGAACGCTTACATGAGATGATACACATGTGTGGTCCCCGGCACAGAAGAGCTGATGAGCATTAATCAAACTTTGAGATCTTAGGGATGATAAACTGTTGTCAGTTGTGACGAACAATTTGGCTATAAATTGTGGTCTCATGCCATTATTGATCCCCCTGAAGGTTGTTATGTTTGTGTACTGTTGACTCGATCCAACGACTAACTTTTTTTATCTCCATGACATTTACATGTGTCAAAAC-CATAG-GTGGTTAAATTTGTATATATTTACAAACTTGTAAACGTCATTTGACAGCAGGGTAAACAGGAAGT]

[+] EMBL OSC847               [CNGNGGCGCTCTCTCTCTCTCTCTTCTCCTCGCCGGCGAGCGCGTCTCGAGATGCCCGCGGCGGCGGCGGCGGCGGCGCGCGGCCCGCTCCTCCATCTCCGGCGGAACCCGGCGCCACGCCTTGCCGCCGCCCGCCGCTCCTTCTCCTCTTCCGGGATGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK100074             [             TCTCTCTCTCTTCTCCTCGCCGGCGAGCGCGTCTCGAGATGCCCGCGGCGGCGGCGGCGGCGGCGCGCGGCCCGCTCCTCCATCTCCGGCGGAACCCGGCGCCACGCCTTGCCGCCGCCCGCCGCTCCTTCTCCTCTTCCGGGATGCGGTGCGTCAGCGCGGCCGCGGGCGCGGGCGGCGGCGGGAGGGAGCGGCGGTCGTCGCCGGCGTTCGGCGGGCTGCTGCTCGACGCCGGGGGCACGCTGCTGCAGCTGGCGCGGCCAGTCGCCCAGACGTACGCGTCCCTCGGCCGGCGATACGGTATGAGCAAGAGTGAGGAGAGCATCAAGGAGGGATTCAAGCGGGCCTTCTCCGCGCCATGGCCAAAGACGCTCAGATACCAGGGAGATGGACGGCCGTTCTGGAGGATTGTGGTGGC GAGGCAACCGAATGCACCAATAATGATTATTTCGAAGAAGTATATGAGTATTACGCTCATGGAGATGCATGGCGTCTGCCTGCTGGGGCTTACGAAACACTGCGTGATCTAAAGGATGCTGGAGTTAAGCTAGCTGTTGTATCTAACTTCGACACACGGTTACGAAAATTACTTAAGGACCTTCATGTCTCGGATATGTTTGATGCCATTGTTGTATCATCGGAGGTTGGACATGAAAAACCTGCTCCAGAGATCTTCAAGAGAGCATTAGATCAAATTGGCGTAGAGGCCAGCAAGGCAGTACATGTTGGAGATGATGAAACTGCAGACAAGGCAGGTGCTAATGCCATAGGGCTTGAGTGCTGGCTGTGGGGACAGGATGTGAGGACATTTTCTGAGATACAAGACCGGATTCTAACAAGATTTCCACAATGACATCATAGAAACCTCACCGCAGGTATATATTGCTCTGACCATGCATGCAAGGATGATCAGGATGAACGCTTACATGAGATGATACACATGTGTGGTCCCCGGCACAGAAGAGCTGATGAGCATTAATCAAACTTTGAGATCTTAGGGATGATAAACTGTTGTCAGTTGTGACGAACAATTTGGCTATAAATTGTGGTCTCATGCCATTATTGATCCCCCTGAAGGTTGTTATGTTTGTGTACTGTTGACTCGATCCAACGACTAACTTTTTTTATCTCCATGACATTTACATGTGTCAAAAC CATAG GTGGTTAAATTTGTATATATTTACAAACTTGTAAACGTCATTTGACAGCAGGGTAAACAGGAAGT]
[+] EMBL CB652746             [                   TCTCTTCCCTTCGCCGGCGAGCGCGTCTCGAGATGCCCGCGGCGGCGGCGGCGGCGGCGCGCGGCCCGCTCCTCCATCTCCGGCGGAACCCGGCGCCACGCCTTGCCGCCGCCCGCCGCTCCTTCTCCTCTTCCGGGATGCGGTGCGTCAGCGCGGCCGCGGGCGCGGGCGGCGGCGGGAGGGAGCGGCGGTCGTCGCCGGCGTTCGGCGGGCTGCTGCTCGACGCCGGGGGCACGCTGCTGCAGCTGGCGCGGCCAGTCGCCCAGACGTACGCGTCCCTCGGCCGGCGATACGGTATGAGCAAGAGTGAGGAGAGCATCAAGGAGGGATTCAAGCGGGCCTTCTCCGCGCCATGGCCAAAGACGCTCAGATACCAGGGAGATGGACGGCCGTTCTGGAGGATTGTGGTGGCAGAGGCAACCGAATGCACCAATAATGATTATTTCGAAGAAGTATATGAGTATTACGCTCATGGAGATGCATGGCGTCTGCCTGCTGGGGCTTACGAAACACTGCGTGATCTAAAGGATGCTGGAGTTAAGCTAGCTGTTGTATCTAACTTCGACACACGGTTACGAAAATTACTTAAGGACCTTCATGTCTCGGATATGTTTGATGCCATTGTTGTATCATCGGAGGTTGGACATGAAAAACCTGCTCCAGAGATCTTCAAGAGAGCATTAGATCAAATTGGCGTAGAGGCCAGCAAGGCAGTACATGTTGGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB652747             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCATCGGAGGTTGGACATGAAAAACCTGTTCCAGAGATCTTCAAGAGAGCATTAGATCAAATTGGCGTAGAGGCCAGCAAGGCAGTACATGTTGGAGATGATGAAACTGCAGACAAGGCAGGTGCTAATGCCATAGGGCTTGAGTGCTGGCTGTGGGGACAGGATGTGAGGACATTTTCTGAGATACAAGACCGGATTCTAACAAGATTTCCACAATGACATCATAGAAACCTCACCGCAGGTATATATTGCTCTGACCATGCATGCAAGGATGATCAGGATGAACGCTTACATGAGATGATACACATGTGTGGTCCCCGGCACAGAAGAGCTGATGAGCATTAATCAAACTTTGAGATCTTAGGGATGATAAACTGTTGTCAGTTGTGACGAACAATTTGGCTATAAATTGTGGTCTCATGCCATTATTGATCCCCCTGAAAGTTGTTATGTTTGTGTACTGTTGACTCGATCCAACGACTAACTTTTTTTATCTCCATGACATTTACATGTGTCAAAACGCATAGTGTGGTTAAATTTGTATATATTTACAAACTTGTAACCGTAAAGGGGCAGCAG              ]




>consensus_9308#0
CNGNGGCGCTCTCTCTCTCTCTCTTCTCCTCGCCGGCGAGCGCGTCTCGAGATGCCCGCG
GCGGCGGCGGCGGCGGCGCGCGGCCCGCTCCTCCATCTCCGGCGGAACCCGGCGCCACGC
CTTGCCGCCGCCCGCCGCTCCTTCTCCTCTTCCGGGATGCGGTGCGTCAGCGCGGCCGCG
GGCGCGGGCGGCGGCGGGAGGGAGCGGCGGTCGTCGCCGGCGTTCGGCGGGCTGCTGCTC
GACGCCGGGGGCACGCTGCTGCAGCTGGCGCGGCCAGTCGCCCAGACGTACGCGTCCCTC
GGCCGGCGATACGGTATGAGCAAGAGTGAGGAGAGCATCAAGGAGGGATTCAAGCGGGCC
TTCTCCGCGCCATGGCCAAAGACGCTCAGATACCAGGGAGATGGACGGCCGTTCTGGAGG
ATTGTGGTGGCGAGGCAACCGAATGCACCAATAATGATTATTTCGAAGAAGTATATGAGT
ATTACGCTCATGGAGATGCATGGCGTCTGCCTGCTGGGGCTTACGAAACACTGCGTGATC
TAAAGGATGCTGGAGTTAAGCTAGCTGTTGTATCTAACTTCGACACACGGTTACGAAAAT
TACTTAAGGACCTTCATGTCTCGGATATGTTTGATGCCATTGTTGTATCATCGGAGGTTG
GACATGAAAAACCTGCTCCAGAGATCTTCAAGAGAGCATTAGATCAAATTGGCGTAGAGG
CCAGCAAGGCAGTACATGTTGGAGATGATGAAACTGCAGACAAGGCAGGTGCTAATGCCA
TAGGGCTTGAGTGCTGGCTGTGGGGACAGGATGTGAGGACATTTTCTGAGATACAAGACC
GGATTCTAACAAGATTTCCACAATGACATCATAGAAACCTCACCGCAGGTATATATTGCT
CTGACCATGCATGCAAGGATGATCAGGATGAACGCTTACATGAGATGATACACATGTGTG
GTCCCCGGCACAGAAGAGCTGATGAGCATTAATCAAACTTTGAGATCTTAGGGATGATAA
ACTGTTGTCAGTTGTGACGAACAATTTGGCTATAAATTGTGGTCTCATGCCATTATTGAT
CCCCCTGAAGGTTGTTATGTTTGTGTACTGTTGACTCGATCCAACGACTAACTTTTTTTA
TCTCCATGACATTTACATGTGTCAAAACCATAGGTGGTTAAATTTGTATATATTTACAAA
CTTGTAAACGTCATTTGACAGCAGGGTAAACAGGAAGT

consensusID : consensus_9308#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 365
fasta sequence

                              [GATTCGGCCGATGAAACTGCTCCANAGATCTTCNANANAGCATTAGATCAAATTGGCGTANANGCCAGCAAGGCAGTACATGTTGGAGATGATGAAACTGCAGACAAAGCAGGTGCTAATGCCATATGGCTTGANTGCTGGCTGTGGGGACA-GGATGTGAGGACATTTTCTGAGATACAANACCGGATTCTAACAAGATTTCCACAATGACATCATAGAAACCTCACCGCAGGTGATCTTCACAGGCTTTCTTTTTTTTTCTCTCCAAAGCTTCGTTGTCATGACCAANANGCGCCAACTTTTGTAATGTNTTAAGTCAAATATCACTAGCATTGGATTATCGATGTATTTGCATTTTGCAAAAA]

[+] EMBL AA752985             [GATTCGGCCGATGAAACTGCTCCANAGATCTTCNANANAGCATTAGATCAAATTGGCGTANANGCCAGCAAGGCAGTACATGTTGGAGATGATGAAACTGCAGACAAAGCAGGTGCTAATGCCATATGGCTTGANTGCTGGCTGTGGGGACA GGATGTGAGGACATTTTCTGAGATACAANACCGGATTCTAACAAGATTTCCACAATGACATCATAGAAACCTCACCGCAGGTGATCTTCACAGGCTTTCTTTTTTTTTCTCTCCAAAGCTTCGTTGTCATGACCAANANGCGCCAACTTTTGTAATGTNTTAAGTCAAATATCACTAG                                   ]
[+] EMBL AU165184             [                                                                                                                                       TGCTGGCTGTGGGGACAGGGATGTGAGGACATTTTCTGAGATACAAGACCGGATTCTAACAAGATTTCCACAATGACATCATAGAAACCTCACCGCAGGTGATCTTCACAGGCTTTCTTTTTTTTTCTCTCCAAAGCTTCGTTGTCATGACCAAGAGGCGCCAACTTTTGTAATGTATTAAGTCAAATATCACTAGCATTGGATTATCGATGTATTTGCATTTTGCAAAAA]




>consensus_9308#1
GATTCGGCCGATGAAACTGCTCCANAGATCTTCNANANAGCATTAGATCAAATTGGCGTA
NANGCCAGCAAGGCAGTACATGTTGGAGATGATGAAACTGCAGACAAAGCAGGTGCTAAT
GCCATATGGCTTGANTGCTGGCTGTGGGGACAGGATGTGAGGACATTTTCTGAGATACAA
NACCGGATTCTAACAAGATTTCCACAATGACATCATAGAAACCTCACCGCAGGTGATCTT
CACAGGCTTTCTTTTTTTTTCTCTCCAAAGCTTCGTTGTCATGACCAANANGCGCCAACT
TTTGTAATGTNTTAAGTCAAATATCACTAGCATTGGATTATCGATGTATTTGCATTTTGC
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9308#0      CNGNGGCGCTCTCTCTCTCTCTCTTCTCCTCGCCGGCGAGCGCGTCTCGAGATGCCCGCG 60
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      GCGGCGGCGGCGGCGGCGCGCGGCCCGCTCCTCCATCTCCGGCGGAACCCGGCGCCACGC 120
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      CTTGCCGCCGCCCGCCGCTCCTTCTCCTCTTCCGGGATGCGGTGCGTCAGCGCGGCCGCG 180
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      GGCGCGGGCGGCGGCGGGAGGGAGCGGCGGTCGTCGCCGGCGTTCGGCGGGCTGCTGCTC 240
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      GACGCCGGGGGCACGCTGCTGCAGCTGGCGCGGCCAGTCGCCCAGACGTACGCGTCCCTC 300
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      GGCCGGCGATACGGTATGAGCAAGAGTGAGGAGAGCATCAAGGAGGGATTCAAGCGGGCC 360
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      TTCTCCGCGCCATGGCCAAAGACGCTCAGATACCAGGGAGATGGACGGCCGTTCTGGAGG 420
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      ATTGTGGTGGCGAGGCAACCGAATGCACCAATAATGATTATTTCGAAGAAGTATATGAGT 480
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      ATTACGCTCATGGAGATGCATGGCGTCTGCCTGCTGGGGCTTACGAAACACTGCGTGATC 540
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      TAAAGGATGCTGGAGTTAAGCTAGCTGTTGTATCTAACTTCGACACACGGTTACGAAAAT 600
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      TACTTAAGGACCTTCATGTCTCGGATATGTTTGATGCCATTGTTGTATCATCGGAGGTTG 660
consensus_9308#1      -------------------------------------------------------GATTC 5
                                                                             * ** 

consensus_9308#0      GACATGAAAAACCTGCTCCAGAGATCTTCAAGAGAGCATTAGATCAAATTGGCGTAGAGG 720
consensus_9308#1      GGC-CGATGAAACTGCTCCANAGATCTTCNANANAGCATTAGATCAAATTGGCGTANANG 64
                      * *  **  ** ******** ******** * * ********************** * *

consensus_9308#0      CCAGCAAGGCAGTACATGTTGGAGATGATGAAACTGCAGACAAGGCAGGTGCTAATGCCA 780
consensus_9308#1      CCAGCAAGGCAGTACATGTTGGAGATGATGAAACTGCAGACAAAGCAGGTGCTAATGCCA 124
                      ******************************************* ****************

consensus_9308#0      TAGGGCTTGAGTGCTGGCTGTGGGGACAGGATGTGAGGACATTTTCTGAGATACAAGACC 840
consensus_9308#1      TATGGCTTGANTGCTGGCTGTGGGGACAGGATGTGAGGACATTTTCTGAGATACAANACC 184
                      ** ******* ********************************************* ***

consensus_9308#0      GGATTCTAACAAGATTTCCACAATGACATCATAGAAACCTCACCGCAGGTATATATTGCT 900
consensus_9308#1      GGATTCTAACAAGATTTCCACAATGACATCATAGAAACCTCACCGCAGGT-------GAT 237
                      **************************************************       * *

consensus_9308#0      CTGACCATGCATGCAAGGATGATCAGGATGAACGCTTACATGAGATGATACACATGTGTG 960
consensus_9308#1      CTTCACAGGCTTTCTTTTTTTTTCTCTCCAAA-GCTTCGTTGTCATGACCAANANGCGCC 296
                      **   ** ** * *     *  **      ** ****   **  ****   * * * *  

consensus_9308#0      GTCCCCGGCACAGAAGAGCTGATGAGCATTAATCAAACTTTGAGATCTTAGGGATGATAA 1020
consensus_9308#1      AACTTTTGTA-----------ATGTNT-TAAGTCAAATATCACTAGCATTGGATTATCGA 344
                        *    * *           ***    * * *****  *    * * * **  *    *

consensus_9308#0      ACTGTTGTCAGTTGTGACGAACAATTTGGCTATAAATTGTGGTCTCATGCCATTATTGAT 1080
consensus_9308#1      TGTATTTGCATTTTGCAAAAA--------------------------------------- 365
                        * **  ** **   *  **                                       

consensus_9308#0      CCCCCTGAAGGTTGTTATGTTTGTGTACTGTTGACTCGATCCAACGACTAACTTTTTTTA 1140
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      TCTCCATGACATTTACATGTGTCAAAACCATAGGTGGTTAAATTTGTATATATTTACAAA 1200
consensus_9308#1      ------------------------------------------------------------
                                                                                  

consensus_9308#0      CTTGTAAACGTCATTTGACAGCAGGGTAAACAGGAAGT 1238
consensus_9308#1      --------------------------------------